LOC110527470 (LOC103366558)


Basic Information

Item Value
gene id LOC110527470
gene name LOC103366558
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 20838415 ~ 20839399 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608752.2
TTTGGCATTACTTTTAATGACGACATGATGTGCGACTGCGCAGAGATGGTACGTCACACTTTCACTTAACAGAGTAATGtcatcaactagctagctagctgggtaCGAATTAAATTATTTTACTCTAATAATGTCGGTCTATCACGACGAAGTTGAGATCGAGGACTTTGAATATGACGAGGATGAAGAGACATACTATTTTCCCTGCCCATGTGGCGACAGATTTGCCATAACCAAAGAGGATTTGGAAAATGGTGAAGAAGTAGCGACGTGTCCGAGCTGCTCGCTCATTGTTAAAGTAATCTACGACAAGCAGGAATTTATGTCTGGGGAGATAATCGAAGCACCAATTACAGAGACCAGATTGAAACTGGCTCAGTCCTCCTGACAGCGATGACACACCTCTTCAGTTTCTCATCTCCCATCAGTAAAAGTGGACCCTGTTGCATTTGTATGTGCTCCCACACAACACAAAGGCACACTATGAACGATATGCTTCACTGGTGAGGTCTGGGATGGAGGATTCTCAGCATTCATTCACAAGTTCCTGGCATTGATTTTGCAGAGTTACATAAAACGACCCAAACTACTACCATTTGCACAACGTATTTAAATAAATCCTTTATTCTTTTAAGTCTTtcaatccttttttttttttataaacatgTTATGCATTTTTGTTGATTCCTCAAGATTAAATCTGGATGAAGTGAA
>TU666669
ACTTAACAGAGTAATGtcatcaactagctagctagctgggtaCGAATTAAATTATTTTACTCTAATAATGTCGGTCTATCACGACGAAGTTGAGATCGAGGACTTTGAATATGACGAGGATGAAGAGACATACTATTTTCCCTGCCCATGTGGCGACAGATTTGCCATAACCAAAGAGGATTTGGAAAATGGTGAAGAAGTAGCGACGTGTCCGAGCTGCTCGCTCATTGTTAAAGTAATCTACGACAAGCAGGAATTTATGTCTGGGGAGATAATCGAAGCACCAATTACAGAGACCAGATTGAAACTGGCTCAGTCCTCCTGACAGCGATGACACACCTCTTCAGTTTCTCATCTCCCATCAGTAAAAGTGGACCCTGTTGCATTTGTATGTGCTCCCACACAACACAAAGGCACACTATGAACGATATGCTTCACTGGTGAGGTCTGGGATGGAGGATTCTCAGCATTCATTCACAAGTTCCTGGCATTGATTTTGCAGAGTTACATAAAACGACCCAAACTACTACCATTTGCACAACGTATTTAAATAAATCCTTTATTCTTTTAAGTCTTtc
>TU666670
ACTTAACAGAGTAATGtcatcaactagctagctagctgggtaCGAATTAAATTATTTTACTCTAATAATGTCGGTCTATCACGACGAAGTTGAGATCGAGGACTTTGAATATGACGAGGATGAAGAGACATACTATTTTCCCTGCCCATGTGGCGACAGATTTGCCATAACCAAAGAGGATTTGGAAAATGGTGAAGAAGTAGCGACGTGTCCGAGCTGCTCGCTCATTGTTAAAGTAATCTACGACAAGGTTCGTGTTTAGATAGCCTCGGTGTCTCACGTTCTGATCGAGTCAACGAGACTAAACGAGAATTAGGAGGCCTCGCGAGACTAGTGTATTGATGGCCCCACCCTTGTCCTTGAATagatttttttctctttctctgatATTGTAACTATTGTGTTCATGATGCCTAATCTATTTCTCTATTAACCAGCAGGAATTTATGTCTGGGGAGATAATCGAAGCACCAATTACAGAGACCAGATTGAAACTGGCTCAGTCCTCCTGACAGCGATGACACACCTCTTCAGTTTCTCATCTCCCATCAGTAAAAGTGGACCCTGTTGCATTTGTATGTGCTCCCACACAACACAAAGGCACACTATGAACGATATGCTTCACTGGTGAGGTCTGGGATGGAGGATTCTCAGCATTCATTCACAAGTTCCTGGCATTGATTTTGCAGAGTTACATAAAACGACCCAAACTACTACCATTTGCACAACGTATTTAAATAAATCCTTTATTCTTTTAAGTCTTtc

Function

NR:

description
DPH3 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608752.2 False 714 mRNA 0.40 3 20838415 20839399
TU666669 False 578 TUCP 0.42 3 20838488 20839336
TU666670 True 765 lncRNA 0.42 2 20838488 20839336
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110527469 LOC106574449 coding downstream 1060 20780524 ~ 20837355 (-)
otos2 LOC106575250 coding downstream 60362 20772867 ~ 20778065 (-)
LOC110527467 LOC106574445 coding downstream 73305 20759004 ~ 20765110 (-)
LOC110527466 LOC106574444 coding downstream 161467 20654190 ~ 20676948 (-)
LOC110527463 LOC106574441 coding downstream 251140 20583202 ~ 20587275 (-)
trnat-ugu-34 NA coding upstream 91709 20931108 ~ 20931180 (-)
LOC110527476 NA coding upstream 103538 20942923 ~ 20949096 (-)
LOC110527478 LOC106574231 coding upstream 112578 20951977 ~ 21021196 (-)
ly75 ly75 coding upstream 206821 21046220 ~ 21079993 (-)
LOC110528811 LOC106575164 coding upstream 241399 21080798 ~ 21110934 (-)
G584500 NA non-coding downstream 32473 20805733 ~ 20805942 (-)
G584490 NA non-coding downstream 45310 20792872 ~ 20793105 (-)
G584487 NA non-coding downstream 50705 20787415 ~ 20787710 (-)
G584483 NA non-coding downstream 54952 20783206 ~ 20783463 (-)
G584481 NA non-coding downstream 59996 20778213 ~ 20778419 (-)
G584501 NA non-coding upstream 32469 20871868 ~ 20873911 (-)
G584542 NA non-coding upstream 34911 20874310 ~ 20874570 (-)
G584555 LOC106574229 non-coding upstream 53123 20892522 ~ 20893678 (-)
G583661 NA other downstream 588430 20215649 ~ 20249985 (-)
G581174 LOC101077481 other downstream 2603377 18217158 ~ 18235038 (-)
G581089 LOC106575297 other downstream 2795035 18042927 ~ 18043380 (-)
G580487 NA other downstream 3437879 17397857 ~ 17400536 (-)
G585240 LOC106575179 other upstream 582055 21421454 ~ 21424585 (-)
LOC110527499 LOC106575189 other upstream 677996 21513832 ~ 21583054 (-)
LOC110527506 LOC106575199 other upstream 1253413 22089741 ~ 22163995 (-)
G586414 LOC106574278 other upstream 1623809 22463208 ~ 22470518 (-)
LOC110527522 LOC106575212 other upstream 1770762 22609884 ~ 22620248 (-)

Expression

LOC110527470(LOC103366558) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
End of interactive chart.

LOC110527470(LOC103366558) Expression in each Bioproject

Bar chart with 21 bars.
LOC110527470(LOC103366558) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.

Co-expression Network