LOC110527471 (LOC106574225)


Basic Information

Item Value
gene id LOC110527471
gene name LOC106574225
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 20860804 ~ 20868580 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608754.2
GTCCGGCCCACCCCAGTCACCCCACTGCCCAGTCCCCGAGTACTGCTGCTCTTAAACCAATCAAGCAGAGACTAGGACTGGTCTTCTCCCTCAACTCTCTGTCAGCACTGACTCCTCGAGCAAGAGACACACAGGCTGAGGCTGCTGCACTCACAGGCAAGAGAGCAAACGGAGAGATTTGATCCAAAATGGCGGAACGCTATGACTGCCATTACTGCAAGGAGTCCCTGTTTGGGAGGAAGTATGTGCTCAGGGAAGAGAACCCCTACTGTGTGAAGTGCTATGAGAACCTGTACTCTAACACCTGTGAAGAGTGCAAGAAGTCCATTGGCTGCAGCAGCAGGGACCTGTCCTACAAGGACCGCCACTGGCATGACGACTGCTTCCACTGCTTCAAGTGTAGCCGCTCCCTGGTGGACAAGCCCTTCTCCACCAAGGACGACCAGCTGCTCTGCACCGAGTGCTACTCCAACGAGTACTCCTCCAAGTGCCACGAGTGCAAGAAGACCATCATGCCAGGATCCAAGAAGATGGAGCATAAGGGCAACAGCTGGCATGAGACCTGCTTCACTTGCCAGCGTTGCCAGCAACCAATCGGCACCAAGAACTTCATCCATAAGGAGAACAGTAACTACTGTGTGCCCTGTTACGAGAAGCAGTTTGCCATGCAGTGTATCCAATGCAAGAAGCCAATCACCACTGGCGGGGTGACCTATCACGATCAGCCGTGGCATAAGGACTGCTTCCTGTGCACCGGTTGTAAGCAGCAGCTGTCTGGCCAGCGGTTCACCTCTCGGGACAACTTTGCCTACTGCTTGAACTGCTTCTGCAACCTGTATGCCAAGAAGTGTGCCTCCTGCACCACCCCTATCAGTGGTCTGGGTGGCAGCAAGTACATCTCGTTTGAAGAGCGCCAGTGGCACAACAACTGCTTCAACTGCAAGAAGTGCTCCATCTCCCTGGTGGGAAGGGGCTTTCTGATGGCCCGCGATGAGATCATGTGTCCAGAGTGCGGCAAAGAAGTCTAAAAGCTGTGTGCCAGGATGGAGCGTCAAAGCCAGAGAAGGCAAAGATGCAAGAGAATATAGTCCTGCTCCTACTAACATTTCATTTATTAGAATTATATATTTATTCAATAATATACACTTCAGACTAACCCAAAGGGCCTTCTGCATGCACTGGCCTCAGATTGATACAATATGTTGTCTGATGGAATGAGCACAAATTGCATTAGATTCTAAGAAAGAGATGCCATTTTGATGTATTTTAAACTAAATAACAACTTTGTCTGTGGTTTGTTGCCATTGAAATATTTAActattgtattatgttgtataTGTTAGGATAATCATCCGTGACAAATAACAATAACAGGAGTTGTACTTTTCATTAAAGCAGTGAAATCTAATGATAACATGACATGTACCTGCACTCTAAATGTGAAATAAAGTATTTAAAAGGCAATTCA

Function

NR:

description
four and a half LIM domains protein 2-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K14380 FHL2; four and a half LIM domains protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608754.2 True 1468 mRNA 0.48 6 20860804 20868580

Neighbor

gene id symbol gene type direction distance location
LOC110527464 LOC106575252 coding upstream 202460 20634135 ~ 20658344 (+)
LOC110527460 LOC106575256 coding upstream 321141 20527428 ~ 20539663 (+)
LOC110527457 NA coding upstream 544917 20301287 ~ 20315887 (+)
LOC118965349 NA coding upstream 697909 20162080 ~ 20162895 (+)
LOC110527453 en1 coding upstream 762741 20093794 ~ 20098063 (+)
LOC110527474 LOC106575156 coding downstream 883 20869463 ~ 20873915 (+)
LOC110528809 LOC106575158 coding downstream 5672 20874252 ~ 20893679 (+)
LOC110527473 LOC106575157 coding downstream 25228 20893808 ~ 20941725 (+)
LOC110527479 LOC106575163 coding downstream 165290 21033870 ~ 21044932 (+)
LOC110527484 LOC106574241 coding downstream 308403 21176983 ~ 21183344 (+)
G584323 NA non-coding upstream 6099 20821799 ~ 20854705 (+)
G584335 NA non-coding upstream 23226 20836435 ~ 20837578 (+)
G584320 NA non-coding upstream 45662 20814926 ~ 20815142 (+)
G584313 NA non-coding upstream 57328 20803217 ~ 20803476 (+)
G584306 LOC106575249 non-coding upstream 68851 20791722 ~ 20791953 (+)
G584616 NA non-coding downstream 162879 21031459 ~ 21031684 (+)
G584617 NA non-coding downstream 164762 21033342 ~ 21033590 (+)
G584644 NA non-coding downstream 214932 21083512 ~ 21083810 (+)
G584645 NA non-coding downstream 215881 21084461 ~ 21085015 (+)
G584671 NA non-coding downstream 259324 21127904 ~ 21128197 (+)
G583605 NA other upstream 621007 20238911 ~ 20239797 (+)
LOC110528807 LOC106574429 other upstream 839077 20017855 ~ 20028775 (+)
G581976 LOC106581475 other upstream 1883805 18976678 ~ 18976999 (+)
G580997 NA other upstream 2367895 18492227 ~ 18492909 (+)
G580365 NA other upstream 3043956 17813342 ~ 17816848 (+)
G584643 NA other downstream 212248 21080828 ~ 21082615 (+)
G585573 NA other downstream 1084449 21953029 ~ 21953269 (+)
c7h10orf53 cssa17h10orf53 other downstream 1488003 22356500 ~ 22360232 (+)
LOC110527523 stat1-2 other downstream 1817909 22684527 ~ 22722539 (+)
G586685 NA other downstream 2141481 23010061 ~ 23015120 (+)

Expression


Co-expression Network