LOC110527474 (LOC106575156)


Basic Information

Item Value
gene id LOC110527474
gene name LOC106575156
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 20869463 ~ 20873915 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608756.2
GACCGGATGTACATGGAATGTGCAGCAGGAAATGCTAACCGCATTAGCTAACCATTCATATCGAGGTCTCCACTCCCACCGGCACACGAATTGTCTAATTCTGGAATCATCATCAGCCAAAATGAGTGCTGCTCCCAACCACAGACGGACCAAGCCTGGTGGCGTGAAGACAGGCTATCCAGGCCAAGCTCCCTCCAACGGGGTTACGGGACCCACTTCCCAGATCCCCGGGCTGTGCCAGGAAGCCACTGAGGGTGCTCCTGAGGCCAGGACCAGCGGAAGGCGTGTGGGAATATTTGACTCTGACTCCGACTATGTCAAACTTGCCAAAGGAGGGGGACAGAAGGGTTTACTGTGGCACGAGGACAACAAGGAGGATGCTAGGCCTAATAAATCCTACAATTCACCTGATCTGTTCTCAGCTGAATCTCAGTGCGGAAGTAAAGCAGCATCCCCTGATGATTGTCAAGGATACGGCAAAAGGCAACCTCTAGCTGCTCCCTTCGGTACTGATGATATTTCAGCCTGGGAAAGGGAGAGTGATAGCTATAAAGAGAAGAACCCCACCGTCACTGATGCGTCCAGCCAGATGGAGAACATGTCTCTAAACCAAGGTGGTTATATGGAGGTCAACAAATACAAGAAGACTCAAAGTGATTTTACTATGGACAGGTCCCATGAGAAGAAAACTGTTCCTGTGAGCATGTCCAAGCTGCTGAGCTTTGGTTACATAGAGGATGAGAAGAAGTCCACCAATGAGGATGACTCCTCAAGTGTGACCTCTGAACAGACGAGCACCATCGCACCTGAGGATGAAGACCTGGAATagggaggagaacagaagaggtcCATCTGGGGTAGAAAACAACAGtggatacacacactcacacctgccATTCACTCTACTGTATGtcttccccccccaccccctctctatctctcagtgACACACTTTCCCTCATTACTGTACATCCCAAGTGTCATGTTTTGTAATTATGCAACTGTACCATCTCTGTTCATTTATTAATTTGATTGTCTTTTGTTTCTTACTCCGTGTAATGTTGTTCTCAGAACACCGACACAGCTTGTCATGTTTATATTATCGTTGTTGAATTGGAGGATGAATTGTGTGACTATGAAACGGTACTGCACACTGGAGTTTCTATTTGTGGTGTAAAAATGGTTTTGGTGCTGTGAAGATTGTTTGTGAACAAGGCCTACTGTACGGACACACAAAGGAGACGTTTGTGGCTCACGCTTTTCAGCTCTCGTGTTGAATAGGATCGGAAACCGAGAGCTCTGCCAGAAAAAAACATGGAAACGTGGATGTTAAGGGATTGACTTGTTATGGGAAGgcagacatgatttggaatggaaGACAGAAAATGCCAATGAATCTACTTTATTCTAAAGAGATGCCCTCCCAACCAAGATACCGACCTATCTCATACCAGGATATGGTTCAGTGTTATGAAGTTATGGTGGGCGTTGATTCCATAGATAGATAGAAACCTTTTGTGATGTTCTAACAATGGTGCCAATTCATTCTACATATTTAGGGAATAGTGGCAATTGTATCGTGCAATGATATTGTTTACTCTGAAGTAAAACGTTTTTGCTTTGAACTGaaggtagggctgggcgatatggccaaattATATCACTATAGTTTACAACGGTATGGTGTTATTTGACTGTATTTTATGTTTCTGAATAATACAAGATCCAAATGTGTTTTATGATTAGTGCATGAGCCTAGAATGGCAACAAATGAATTCTAAGTTATTTTAACAGGCTTACTCCATGCTGATGGTTTTATTCTCAACCAAACTAGGACTAAAGTGACAGTGAAATAGTCCAATTTGTTGAACGTTTCAGTTATTTAGCACTtaataaaaacgttttttttataGACAACATGTGGGTATACCAGTATTCATGCTATATCGCCCAGCCTTATGTGAAGGTAGCTTGGAGACATTTTCCACTTAGCACAGTAAATACACAGTAATGATCTTCCCTAGTTATTCATTGGTGGAGAGGTCCACTTTATTAACACAGTCAATGTGTGATTCTCACATCTTTCTTAAAGTGATGAGTGCACTGAGGCTACTGAGTGAAAATGTCATTAAAATAAATGAGCATGTGCATGTA
>XM_021608757.2
GACCGGATGTACATGGAATGTGCAGCAGGAAATGCTAACCGCATTAGCTAACCATTCATATCGAGGTCTCCACTCCCACCGGCACACGAATTGTCTAATTCTGGAATCATCATCAGCCAAAATGAGTGCTGCTCCCAACCACAGACGGACCAAGCCTGGTGGCGTGAAGACAGGCTATCCAGGCCAAGCTCCCTCCAACGGGGTTACGGGACCCACTTCCCAGATCCCCGGGCTGTGCCAGGAAGCCACTGAGGGTGCTCCTGAGGCCAGGACCAGCGGAAGGCGTGTGGGAATATTTGACTCTGACTCCGACTATGTCAAACTTGCCAAAGGAGGGGGACAGAAGGGTTTACTGTGGCACGAGGACAACAAGGAGGATGCTAGGCCTAATAAATCCTACAATTCACCTGATCTGTTCTCAGCTGAATCTCAGTGCGGAAGTAAAGCAGCATCCCCTGATGATTGTCAAGGATACGGCAAAAGGCAACCTCTAGCTGCTCCCTTCGGTACTGATGATATTTCAGCCTGGGAAAGGGAGAGTGATAGCTATAAAGAGAAGAACCCCACCGTCACTGATGCGTCCAGCCAGATGGAGAACATGTCTCTAAACCAAGGTGGTTATATGGAGGTCAACAAATACAAGAAGACGTCCCATGAGAAGAAAACTGTTCCTGTGAGCATGTCCAAGCTGCTGAGCTTTGGTTACATAGAGGATGAGAAGAAGTCCACCAATGAGGATGACTCCTCAAGTGTGACCTCTGAACAGACGAGCACCATCGCACCTGAGGATGAAGACCTGGAATagggaggagaacagaagaggtcCATCTGGGGTAGAAAACAACAGtggatacacacactcacacctgccATTCACTCTACTGTATGtcttccccccccaccccctctctatctctcagtgACACACTTTCCCTCATTACTGTACATCCCAAGTGTCATGTTTTGTAATTATGCAACTGTACCATCTCTGTTCATTTATTAATTTGATTGTCTTTTGTTTCTTACTCCGTGTAATGTTGTTCTCAGAACACCGACACAGCTTGTCATGTTTATATTATCGTTGTTGAATTGGAGGATGAATTGTGTGACTATGAAACGGTACTGCACACTGGAGTTTCTATTTGTGGTGTAAAAATGGTTTTGGTGCTGTGAAGATTGTTTGTGAACAAGGCCTACTGTACGGACACACAAAGGAGACGTTTGTGGCTCACGCTTTTCAGCTCTCGTGTTGAATAGGATCGGAAACCGAGAGCTCTGCCAGAAAAAAACATGGAAACGTGGATGTTAAGGGATTGACTTGTTATGGGAAGgcagacatgatttggaatggaaGACAGAAAATGCCAATGAATCTACTTTATTCTAAAGAGATGCCCTCCCAACCAAGATACCGACCTATCTCATACCAGGATATGGTTCAGTGTTATGAAGTTATGGTGGGCGTTGATTCCATAGATAGATAGAAACCTTTTGTGATGTTCTAACAATGGTGCCAATTCATTCTACATATTTAGGGAATAGTGGCAATTGTATCGTGCAATGATATTGTTTACTCTGAAGTAAAACGTTTTTGCTTTGAACTGaaggtagggctgggcgatatggccaaattATATCACTATAGTTTACAACGGTATGGTGTTATTTGACTGTATTTTATGTTTCTGAATAATACAAGATCCAAATGTGTTTTATGATTAGTGCATGAGCCTAGAATGGCAACAAATGAATTCTAAGTTATTTTAACAGGCTTACTCCATGCTGATGGTTTTATTCTCAACCAAACTAGGACTAAAGTGACAGTGAAATAGTCCAATTTGTTGAACGTTTCAGTTATTTAGCACTtaataaaaacgttttttttataGACAACATGTGGGTATACCAGTATTCATGCTATATCGCCCAGCCTTATGTGAAGGTAGCTTGGAGACATTTTCCACTTAGCACAGTAAATACACAGTAATGATCTTCCCTAGTTATTCATTGGTGGAGAGGTCCACTTTATTAACACAGTCAATGTGTGATTCTCACATCTTTCTTAAAGTGATGAGTGCACTGAGGCTACTGAGTGAAAATGTCATTAAAATAAATGAGCATGTGCATGTA

Function

NR:

description
uncharacterized protein C7orf57 homolog isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608756.2 False 2154 mRNA 0.43 8 20869463 20873915
XM_021608757.2 True 2130 mRNA 0.43 8 20869463 20873915

Neighbor

gene id symbol gene type direction distance location
LOC110527471 LOC106574225 coding upstream 883 20860804 ~ 20868580 (+)
LOC110527464 LOC106575252 coding upstream 211119 20634135 ~ 20658344 (+)
LOC110527460 LOC106575256 coding upstream 329800 20527428 ~ 20539663 (+)
LOC110527457 NA coding upstream 553576 20301287 ~ 20315887 (+)
LOC118965349 NA coding upstream 706568 20162080 ~ 20162895 (+)
LOC110528809 LOC106575158 coding downstream 337 20874252 ~ 20893679 (+)
LOC110527473 LOC106575157 coding downstream 19893 20893808 ~ 20941725 (+)
LOC110527479 LOC106575163 coding downstream 159955 21033870 ~ 21044932 (+)
LOC110527484 LOC106574241 coding downstream 303068 21176983 ~ 21183344 (+)
sumo1 sumo1 coding downstream 372443 21246358 ~ 21249349 (+)
G584323 NA non-coding upstream 14758 20821799 ~ 20854705 (+)
G584335 NA non-coding upstream 31885 20836435 ~ 20837578 (+)
G584320 NA non-coding upstream 54321 20814926 ~ 20815142 (+)
G584313 NA non-coding upstream 65987 20803217 ~ 20803476 (+)
G584306 LOC106575249 non-coding upstream 77510 20791722 ~ 20791953 (+)
G584616 NA non-coding downstream 157544 21031459 ~ 21031684 (+)
G584617 NA non-coding downstream 159427 21033342 ~ 21033590 (+)
G584644 NA non-coding downstream 209597 21083512 ~ 21083810 (+)
G584645 NA non-coding downstream 210546 21084461 ~ 21085015 (+)
G584671 NA non-coding downstream 253989 21127904 ~ 21128197 (+)
G583605 NA other upstream 629666 20238911 ~ 20239797 (+)
LOC110528807 LOC106574429 other upstream 847736 20017855 ~ 20028775 (+)
G581976 LOC106581475 other upstream 1892464 18976678 ~ 18976999 (+)
G580997 NA other upstream 2376554 18492227 ~ 18492909 (+)
G580365 NA other upstream 3052615 17813342 ~ 17816848 (+)
G584643 NA other downstream 206913 21080828 ~ 21082615 (+)
G585573 NA other downstream 1079114 21953029 ~ 21953269 (+)
c7h10orf53 cssa17h10orf53 other downstream 1482668 22356500 ~ 22360232 (+)
LOC110527523 stat1-2 other downstream 1812574 22684527 ~ 22722539 (+)
G586685 NA other downstream 2136146 23010061 ~ 23015120 (+)

Expression


Co-expression Network