LOC110527479 (LOC106575163)


Basic Information

Item Value
gene id LOC110527479
gene name LOC106575163
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 21033870 ~ 21044932 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608763.2
CTGGAGTACATTGTCCATCACCATCCTGAGTTGTATGTACTTTCTCTGGGTGTCTGATTGCATTGTAAATCACATGACCTTCTCTATATCAACACACAGACGCCGTCATCATTGAATGCAGCGAAGCTTGGAAGCAAAGCCAATCAGTGATGGATTCCAAGCCTCGTCGGCTGCCCTTTACGGTGTCCGGCACCACGTCGTCTTATTCTtcatcctcttccccctcctccctggGTTCCAGCAGACTCTATGGAAGAACCAGTGTCCTGAACAGTGATCGATTCACCAGGGCCACACCCCTTAAACCTGACCTCGACCACCAGGTGTCTCCGAGCTCTCGGTTCCTCAGCTCGACCAGGGACTACAGTAGCTCTGACAGCCGCCACTCCAGCTGGAAATCCCCTCTGACCACCTCCTCGGTCTCCTACGATCGCTCCTGGGCCGAGTCCTCACTGAGCAGCCGCAGCAAACCGACTGATTCAGAGCGAAGACTGGGGACGTACTCAGGACTTCTCAGCAACACAACTGATGATGGGGATACCAAACGGGTCAAACTGTCCTATACCAACAGAGCTGCATATACAAGAAGCCCCTCCTCCTCTGTGACTGGCTCCTCCTACTCCAGCAGTATCCTCAGAGACACTGATTCGTCGTCGTGGAAGTCGTACCGGCCTCTGTCcaggtcgtcctcctcttcttcctcctcctcttcctcctcagagcCCCTGTGGTCCAGAAGGGAGCTGGAGAAGAGGACTGAGGGGAGGAGTCTGTCTAGTGAGGCTGACACCAGCTATAGGAGCTCTGGACTCAGCTCATCCCTGTACCGGCCAGACCGTGTGACCTCCACCTATGCCCAGGGGGCCCGGCCCAAGGAGACCCTCTACTCTTCCTCTAGCAGGGAGAGCAGCTCCCTCAGTCGCCACCTCTCTTCCACTTACCAGCGCTTCCCACTGGCCCGGGACTCCACCACCTCCCGGACCACCGGCCACTCCCTGACCACCTCTACCTTCCGCACCACCAAGGAACCCACTGAGAGCCCAGAGCCCACTCTAGGAGCCTCCGTCTCCTCTCGCCCCTCGTCTTGGTACACAACCCCCTCAGCAAGACGGGAGGCCCGGGACTCCAGCCCCCCTCCCTCCGCGCCAACCACCACCCCCAGGACAACCCCAGAGGGTGGCGAGGCATCCGATGGACGTCGCTCCACCCGCCGtctcctctcccgcctcttctcTCGGCGCTCCAGCCAGGACTCCAGTGGCTCCAGCTCTGGCTCCACCTCCCGCTCCTTCGACTCGGCCGAGGACAGCCCTGTCGTTGAAGTCCCCAGCCACACACCCGTGGCTACCAGCGAGGAGAGCGTCCGGCCCGTGAGTGTGGAACCCGTTCCCAGAGGCTCTGACGCGGCTCAGGCCTTTGCCTTCTTGAGGCGTCGCAGACAGGGCCTGTCCCCGGTCCAGGAAGGTCAGACCCAGCGTGGCCTGGAGGCCTGGAGAGGGGGCAGCACCAGTGGTGTTGGAAGTAGTACTTCAGGTTCCTCCTGGCTGTCGTCTTCCATCCAGACCCGCtgcactcctctcttctcccgcCGTAGAAGAGAAGGACGGGACGAAAGCGCTCGCCTGGCATCCGGCGCCGACGAGGATTACCGTGGTACCCAGTTCCCCCTCAGGAGGAGAGACTCCCCCGAGGATGATGAGGAAGACGAAGAGGAAGTTGCAGCAGCAGCCTCGGGGACGATGGGCGCTAGCGCCGCCCTACAGGAAGAGTTGAGAGACATGGCGGGGAGTAGTCAGCGTTTGGCGAGGTTCATGAGCAGCCCGCTGTTCCGCGTCCACGACAACGTCATGATCGCCGTGGACATGACGGGCGCCGCCAGGAGCCAACCGGAGGGCCAGGAGAAGCCCACCTCCTCCAGAGACCCTGAGAGACTGAGGAAGATCCAGGAGAGCCTGCTGTTGGAGGACTCTGACGAGGAGGAAGGGGACCTGTGTCGTATTTGCCAAATGGGTGAGGagtctccctccaaccctctgaTCGAGCCCTGCCGCTGCACAGGCAGCCTGCAGTATGTTCACCAGGACTGCATCAAGAAGTGGCTGCGTTCCAAAATCAGCTCTGGCACGAATCTGGATGCCCTCACCACGTGTGAGCTGTGCAAAGAAAAGCTGCACCTGAACATTGAGAACTTTGACATCAACGAGCTACACAGGACTCATGAGAAGTCTGAGTACGAGTTCATCAGCTGTGGCCTTTACCTGGTGGTGTTGCTTCACCTGTGTGAGCAGAGGTTCTCTGATGTGCTAGGAGCTGCCAACGACGCCGGGTTTTTCAACCTGGCGAGAACCCTTCACGAACACATGGACAATCTTGAAAGCTCTTATGGGGAATCGGACGAAGAGGTGGTTGATACTCGGCCGTCAATCGATTTCTGTGACCTCGATGAAGACCTGGAAGAGGAGTACAATTGACCGACGGGGGATAAGGAAAAATAGATGGGGGGGCAAGCAGAAGAATTGAAGGTGTTACCAGCTAGTAGCAACCCATTCTGTTTCATCTTGTGTGATTTTACTGAGTGCAATGGCTTGTGAGATTTTCTTTAAAGCCAATGCCAAGTAGATGGGAAGTCACTCCTGACGTAGAGGTGACGATGTCATAGATATGCAGACTGACTTTGAAGTGGACCGAGGTGAGGAAATgctttatacccccccccccctcaaggtCTCCAGATTTGAGCTTTATTCCGTTAAAATGCAAGATGTCTTTTTGAACTGTGATACCACGAGTGCTTTAACTGTTTCCTGATCTACAAAAGCAGATCCGGCCACCGTGGTGAGATATTGTGTAAAattaaaaaaagagagaaattGAAAAAGCTCCCAAACACAACACTGGTTCATTAGTTTAGCGGGTTGGGAGAAAGGAAAGGGCTGTTTAGGGAAGATTATATCAAAAAGTGGCAAATTATTCCCTTTACTGTTTACAGCTCAATAATTGACAGTTTGTTCTGTTTTTGTCTGTTTTCAATGTTTGCGGTATGAAAATGCTATTTTGCTTGGCTCTGAAACTTGTTTTCATTTAATTGTTGCAATAAAGTTTTGAATGTACA

Function

NR:

description
E3 ubiquitin-protein ligase MARCH7-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10662 MARCH7, AXOT; E3 ubiquitin-protein ligase MARCH7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608763.2 True 3112 mRNA 0.55 11 21033870 21044932

Neighbor

gene id symbol gene type direction distance location
LOC110527473 LOC106575157 coding upstream 92145 20893808 ~ 20941725 (+)
LOC110528809 LOC106575158 coding upstream 140191 20874252 ~ 20893679 (+)
LOC110527474 LOC106575156 coding upstream 159955 20869463 ~ 20873915 (+)
LOC110527471 LOC106574225 coding upstream 165290 20860804 ~ 20868580 (+)
LOC110527464 LOC106575252 coding upstream 375526 20634135 ~ 20658344 (+)
LOC110527484 LOC106574241 coding downstream 132051 21176983 ~ 21183344 (+)
sumo1 sumo1 coding downstream 201426 21246358 ~ 21249349 (+)
LOC110527488 LOC106575173 coding downstream 270074 21315006 ~ 21337432 (+)
LOC110527489 LOC106575175 coding downstream 294760 21339692 ~ 21354616 (+)
LOC110527490 LOC106575177 coding downstream 310204 21355136 ~ 21364322 (+)
G584617 NA non-coding upstream 280 21033342 ~ 21033590 (+)
G584616 NA non-coding upstream 2186 21031459 ~ 21031684 (+)
G584323 NA non-coding upstream 179165 20821799 ~ 20854705 (+)
G584335 NA non-coding upstream 196292 20836435 ~ 20837578 (+)
G584320 NA non-coding upstream 218728 20814926 ~ 20815142 (+)
G584644 NA non-coding downstream 38580 21083512 ~ 21083810 (+)
G584645 NA non-coding downstream 39529 21084461 ~ 21085015 (+)
G584671 NA non-coding downstream 82972 21127904 ~ 21128197 (+)
G584711 NA non-coding downstream 85978 21130910 ~ 21131228 (+)
G584714 NA non-coding downstream 87727 21132659 ~ 21137506 (+)
G583605 NA other upstream 794073 20238911 ~ 20239797 (+)
LOC110528807 LOC106574429 other upstream 1012143 20017855 ~ 20028775 (+)
G581976 LOC106581475 other upstream 2056871 18976678 ~ 18976999 (+)
G580997 NA other upstream 2540961 18492227 ~ 18492909 (+)
G580365 NA other upstream 3217022 17813342 ~ 17816848 (+)
G584643 NA other downstream 35896 21080828 ~ 21082615 (+)
G585573 NA other downstream 908097 21953029 ~ 21953269 (+)
c7h10orf53 cssa17h10orf53 other downstream 1311651 22356500 ~ 22360232 (+)
LOC110527523 stat1-2 other downstream 1641557 22684527 ~ 22722539 (+)
G586685 NA other downstream 1965129 23010061 ~ 23015120 (+)

Expression


Co-expression Network