LOC110527484 (LOC106574241)


Basic Information

Item Value
gene id LOC110527484
gene name LOC106574241
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 21176983 ~ 21183344 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036982929.1
AGTCCTGTGTGTCCCTCAGTCAGCCTCCCTGCTCCAGTCCACTCCAGCTGCCAGCCCAGACCCTTCTCCTGTTCCAGCCCAGACCCTTCTCCTGTTCCAGCCCAGACCCTTTTCTTGCTCCAGCCCAGACCCTTCTCCTGCTCCAGCCCAGAACATTCTCCTGCTCCAGCCAAGACCCTTCTCCTGCTCCAGCCCAGAACATTCTCCTGCTCCAGCCCAGACCCTTCTGCACTCCACCATGAGCTCCTACCGCTCTTCTGCTCAGTCGGCCCAGTCTGGCTCCTCCTCCTACCGCCGCACCTTTGGCGCAGGATACAGCCCTGCCATGTCCCATTCCCTCTACAGCAGCCGGGGCTCGGGCGGGGGGCTCGGACTCGGACATGGCGGCTCCGGCCACATCTCCTCCCGGGTCTACGAAGTCACCAAgacctctgcctctccctcttacTCCGGCTACCGCACCTCGTCTCACTTTGGCGGACCTGTGATGTCATCGACCGCCCACGGTTCGCGGTCCTACGCGGGGATGGGGGAGACGCTGGACTTCAGCCTGGCCGACGCACTGAACCAGGAGTTCCTCCACACGCGCACCAACGAGAAGGTCGAGCTGCAGCACCTGAACGACCGCTTCGCCAGCTACATCGAGAAAGTTCGCTTCCTGGAGCAGCAGAATGCTACATTGGTGGTGGAGATTGAGAGGCTGCGGGGGCGTGAACCCACACGCATCGCCGACCTGTACGAAGAGGAGATGAGGGACCTGCGTCGCCAGGTGGAGGCCTTGACCAATCAGAGGAGCCGCGTCGAGGTGGAGAGGGACAACCTGGGCGAAGACTTGGACAAACTCAAACTCAGACTGCAGGAAGAGATCCTTCAGAGAGAGGACGCAGAGAACAACCTGGCTGCTTTCAGAGCTGATGTTGATGCTGCCACTCTGGCCCGTCTAGACTTGGAGAGACGCATCGAGACGCTACAGGAGGAGATCGCCTTCCTCAAGAAGATTCACGAGGAGGAGATCCGTGAGATGCAGTCCCAGATGCAGGAGACCCAGGTGCAGATCCAGATGGACATGTCCAAGCCGGACCTGACAGCTGCCCTCAGGGACATCAGGGCTCAGTACGAGGGCATCGCCGCCAAGAACATCTCGGAGGCCGAGGAGTGGTACAAGTCTAAgGTGACAGACCTGAACCAGGCGGTGAACAAGAACAATGAGGCTCTGAAGGAGGCCAAGATGGAGACCATGGAGTTCAGACACCAGCTCCAGTCCTACACCTGTGAGATTGACTCACTTAAAGGCACCAATGAGTCTCTGATGAGGcagatgagagagatggaggagcgcCACGGGCGGGAGGCCGGCGGGTTCCAGGACACCATCTCCCGTCTGGAGGCTGAAATCGCCAACATGAAGGATGAGATGGCCAGGCACCTGAGAGAGTACCAGGACCTGCTCAACGTCAAGATGGCCCTGGACGTGGAGATAGCAACCTACAGGAAActgctggagggagaggagagcagGATTTCCCTGCCCATACAGAACTATTCCACCATGACTTTCCGTGAAACGAGCCCAGAGCATCATCACCGCGTTGCTGAGTCACACTCAAAGAAAAGTGTCCTTATCAAGACCATCGAGACCCGTGACggagagGTGGTCTCTGAGTCAACACAGCACCAGCAGGATATCATGTAACAGACAAACAGAAGAGAAGATGAAGACTGAGGGAAGACAAAAAGACTAAATAAAAACGAAAAGGACTTTATCAACTCACCCTGGTGACCCTTTAGTTGTTCTTATTTCAAAGACGTTAAGTCTTTAAAGACACAAAGGTCACTCGCTCCAATGAAATAGTCAAAAGGCTGGGTGACTTCAAGTACGAGCCGACCTGTTTGTAACTTCCTACTACAGCTATGTGCACCGTTTGCCTTTATTTATGACTATATATATGATACTGTACGTTCTATCACAAGGCTGACACTAGTATGAGGAGGGTTCtcaatggacagagagacagaggagaggggtgagaagggAGAGATGTGTCTAGGgaaaaggagacaggggagggggtGAAACAggtgagaaggggagacaaaATGAAAGATGGAAAAGGGGGAACATGGAATGAGAGTGAGGCTGACAATCGCTTATGCTGTTCTGAATGGTGGGCCTACAGGTTGGttaacaaacacaacaaacagcGACACACGGTCACCAGCCTGCCAGTCTCTGTACCAGTCTATCATGTTCtcagtgtgggtgtgtgcgtgcgttttgAATTAACAGCCAAAGACATTGAAGAATCACTTTGTTTATCATATACAGGCCCATAAAAACACAtgctttaataataataataataataataatagtattaaTAATTATATTTGTAATACGAAGCATGGCATATCACCGGCCTACATTTATGAGGCTGCACTCCTGAAGTCAAAAGATGTCAATAACATAATGTCAATAAATTACCTGATAAATAAA

Function

NR:

description
PREDICTED: desmin-like

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K07610 DES; desmin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036982929.1 True 2494 mRNA 0.53 9 21176983 21183344

Neighbor

gene id symbol gene type direction distance location
LOC110527479 LOC106575163 coding upstream 132051 21033870 ~ 21044932 (+)
LOC110527473 LOC106575157 coding upstream 235258 20893808 ~ 20941725 (+)
LOC110528809 LOC106575158 coding upstream 283304 20874252 ~ 20893679 (+)
LOC110527474 LOC106575156 coding upstream 303068 20869463 ~ 20873915 (+)
LOC110527471 LOC106574225 coding upstream 308403 20860804 ~ 20868580 (+)
sumo1 sumo1 coding downstream 63014 21246358 ~ 21249349 (+)
LOC110527488 LOC106575173 coding downstream 131662 21315006 ~ 21337432 (+)
LOC110527489 LOC106575175 coding downstream 156348 21339692 ~ 21354616 (+)
LOC110527490 LOC106575177 coding downstream 171792 21355136 ~ 21364322 (+)
LOC110527492 LOC106575178 coding downstream 185357 21368701 ~ 21374052 (+)
G584714 NA non-coding upstream 39477 21132659 ~ 21137506 (+)
G584711 NA non-coding upstream 45755 21130910 ~ 21131228 (+)
G584671 NA non-coding upstream 48786 21127904 ~ 21128197 (+)
G584645 NA non-coding upstream 91968 21084461 ~ 21085015 (+)
G584644 NA non-coding upstream 93173 21083512 ~ 21083810 (+)
G584792 NA non-coding downstream 60630 21243974 ~ 21244173 (+)
G584795 LOC106575172 non-coding downstream 67930 21251274 ~ 21254524 (+)
G584830 NA non-coding downstream 84500 21267844 ~ 21268087 (+)
G584808 NA non-coding downstream 205951 21389295 ~ 21392225 (+)
G584820 NA non-coding downstream 210539 21393883 ~ 21438876 (+)
G584643 NA other upstream 94368 21080828 ~ 21082615 (+)
G583605 NA other upstream 937186 20238911 ~ 20239797 (+)
LOC110528807 LOC106574429 other upstream 1155256 20017855 ~ 20028775 (+)
G581976 LOC106581475 other upstream 2199984 18976678 ~ 18976999 (+)
G580997 NA other upstream 2684074 18492227 ~ 18492909 (+)
G585573 NA other downstream 769685 21953029 ~ 21953269 (+)
c7h10orf53 cssa17h10orf53 other downstream 1173239 22356500 ~ 22360232 (+)
LOC110527523 stat1-2 other downstream 1503145 22684527 ~ 22722539 (+)
G586685 NA other downstream 1826717 23010061 ~ 23015120 (+)
LOC110527540 LOC106533352 other downstream 2428008 23609520 ~ 23621369 (+)

Expression


Co-expression Network