LOC110527485 (LOC106574242)


Basic Information

Item Value
gene id LOC110527485
gene name LOC106574242
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 21183950 ~ 21205077 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608781.2
cgaaaggaaggaaggaaggatagaagggggagagagagaggaaaagaaggaaggagagagcaagagagagagagcgacgcaAGAAGGGGTGGGGTGATGTTCAGGTGAGGTGAGGATAAGCGATAGCGAGGCGTCGGGGAGGTAAAGTGATGCATGCTGGGAACAATATGGAGCTCATGAATATCTCACCAGCAACAGCTCCAGTGAGAGTCAGACGAGCTCACTAACACACACTGGGCTCCTTATGTAACCCAACATCTGACCCAGAAACCTCCTTGCACGGAAGGctagagagacggggagagagagaacaaaggaggaggagtgggaaagaGGGGAACGAGGTCGTTGGGTGGATTCTTGTGGATGGGAAATGCTCCCTGATCttccctgccctcctcctccctctcctgaaCACCCCAATCCCTCCATCTCTCGTTTTCACtttctccatcactccatcactctctggtCGCCATGACGTCTACGCTGCAAACGCTGGCGCTCAAGCTGGCCCCACCCCCTCAGGACCTAAACCCTGAGCGGTTGGACGGCTGCGAGGAGACGGGCCGGCGCTACAAAGTGGTTCCCTCCGTCGTGTGCTCCATGTGTTGCCTCTTCGGCATCATCTACTGCTTCTTCGggtaCCGTTGTTTCAAGGCGGTGATGTTCCTGACGGGCCTGATGTTCGGCTCCATCGTCATCTTCATGTTGTGTTATAAGGAGCGCGTCCTGGACACCCAGCTCAGTGTTGAGGCCTCTGTGGGCATCGGCCTGGGCATCGGCACCCTCTGCGGCCTGGTCACCATGCTGGTTCGCTCCGTGGGTCTCTTCATGGTGGGTCTCCTCCTGGGCCTCTTGGTGGCTGTGGCTACCCTGGTGGGCATGGAGGAGCTGTCCAACAGCCCCCCGAGGTCGGTCTGGGTCCCCCTGGGGGTGCTGCTCGGCCTGGGCATGCTGTTCGCCGTTCTCACCCTCCAATGGCAACGTTTCTTCACCACCGTGTCCACGGCCGTGTTCGGGGCGGCGGTGATCACCGTGGCGCTGGACTACTTTGTGGAGCTGTTTGCCCTGGTGCTGTACCTGTATGAGAGGGTAAAAGCGGCGCCCAGAGGGAGACCCGTCTGTTGGATCACCTGGGTGGTGCTGGGGGTGTGGCCTGTTCTGACGCTCCTGGGGGTGCTAATACAGTGGAAGGTGACAGCAGAGGGATACTCCCACACCAAGGTGATAATCAGTCGTCAGCAACGGCGGGTCCAGCTGATGCGTATCCGTCAGAAGGAGGAGCGGAGGGACCGCAGCAGGAAGAGGAAGAATAAGCAACAGAGAGACTCCACCCACAGCTCTCACCCTCCCAAACCCCTGCACCCCGAGCCCGCCTATCGCAGGAAACCCAACCCTATACGACGCTTTGACGGGGACGTCCTATCGCCTagttACATCCAGAGTTTCCGGGACAGGCAGGTTGAGGCCAGGCCGTATCCTGGAGGGGGCAGACTgatggggggaggaggggctCACACCAATGTGGATGTGGACTATGACTGTGGCTCCACCACGCCCCTCACTGCGGCTGCAGGCCCCTTACTACGAGTCTGAACACTCTCCTAACCACTGGTCCAACCACACCTCCAATGATCTGGCAGCCATATCACACCCCCAAAAGGTGTGACCACACCCACAACCCACCTGTGCTGCAGTATGGATCTGACCACACCCCTAAATGGTGCGACCACACCCCCAAAGGCCTGTATTGAAGTATAGGTCTGACTGACCACTCCCCCACCACAATGCTGGAGCCAATCAGAGTATGTGAATAGTTAAGGCCTGAACTCCTTTttctgtttcacacacacacaccagccacatGCATGAAAATACTGTACACACATCCACAAACACTGCAGTGGAACTGGACCtggtgaacagagagagaaatacagggCCTCCAACTGGATGGATAGATGTTACCTgaggcttctctctctccatccagtcTCCAGCCAGTCTCCATCGGGACACAGTTTAAAGAAGCATGGCTCAGGTTTCAAATGAGGAATCGTTTTACCACGGACACCGGAATACAATCCTCTCTCTTCAGGATTTTGAAAGATTCAACTTAAAGTCTTGTCTACTGCTCGGCAGTCTTAATTCCTCAAATCATTCTCTGTCGTCAACAGGCAGTTCCTTTGTACTGCATTTCTACGGTTCCATCCTTCTATGGAGTTGGGACCTTCTGATGAGAACTGACTAGTCATAAACACCCCTGCTCTGTGCCATGCCAGCCCAACAACAGATCACCTCCTGGGAAGGAGAAGAATATCTGTCTTTTAAGAGGAAGCATTATGCATTCTTGGTGCTGGACGATATCCTTCTTTGGAAAGCAGTTTGAAATCCCCCTTCTTTAAATTAAGTTGGGAGATCCGGTTGATTTACGGGTGCCTTGTGACTGCCCTTACTTGGACTGTACCACTCAGCAGTGAGATAGGGGTTATTGGCAGTGGTCACTGACTGAGAGATGTGAGAGACTATATGATAACATGCTATATTATTATAGTGACAGACAACAAAGTTGTTGCGATAGGAATGAGGGTAGGCCTATGTCTAGCAGAGGAGCAACAGTGACCCAATCAGGGAGCAAGCAAGGAAACAGTGGATGGTGATTGGTCTAACCTGCCCTGGGCTCTACCAAAAGGAACCCTACATGAAGTCAGCACAGGGTCAACAAGAGGTCAATAAAGAGTTCAAAACAGAAAGGGGTCCGAATAAACGATCGACCAATACAACGAGAGTATTGaccactccccctccactctACAGAGAGGACCATTCAGGTCACAGAGGATCGCCTACATATAGATAGACCCCTACATAATGTGCATTGGCTTTTCAATATGGGTCACAACATTCTGTCTATCGTGTATCAGTAAATGACATGACATCTATGGTTTATTATTGTCTTTGACTCAGACTGTGAAAGGGACTGTGAGTGTGAAACACATGATAAAATAATACAGGCgtgatgttattattattattattatgattatgattGCCCCATTGGGCTGTGGGTCGGGACAGGGTATGAGAATCAAATTTCTTTTCCCAGAATCTTCCAGGGGAAATCGACCTGGCTGCATGACTCAGTGGTTCCTTCCTGTTCCTgtccccctctcctgtccccctctcttaTCTGTCTCCCGTGGCTTTGTCCTCCTCAACTCACCGTTCCTATCCCCTCTAGCCTGGTCAGCCCACATCTAACAACCACGCGCAGTTTGTTAAACACTTCTCATGAATAGCTTCTTAATAATGCTA
>XM_021608780.2
CATGGGTCGGGACCACTGTCCTCCATATTTTGTCTTAGAGCGCTCCTTCTTATCCTCAGCCATCCAGCCCTGCACTTTTCCTTAGAATGGTATGCCCCGGCATGAGCCTATAGAGCCTGCTGATGCGATACATCTCCTCTACACCCTGCACGCTCATATTATTTTCCTCGGCACTCTGCAAAGCCTCGAATGTGGATTGGATGAAGCTGTAGGATACATCTCTAAAATTATGCTATACATAGAATAGTGTATGTTCTATAATGTAGACTAGTCACTGTATATTTTTGAATTAGGCTACAGTTGTCTTGTGTCTGGCTACATTGGATTACCTGGAGCAGCTAGAATCATCCGTCGCGCCCTAATGGGCTTTGACTGTATCCTATTCATAGGGAGTGAGTATCAAAATGAGGGATGCTGAACGATTCCGATGAGTCGTTCTGGGGCAAGATGCGGACAGAATGTCTGGGGCAGTGCTTCGTAGGATGTTGAGGCTTTGTGATGGTGGATTCTTGTGGATGGGAAATGCTCCCTGATCttccctgccctcctcctccctctcctgaaCACCCCAATCCCTCCATCTCTCGTTTTCACtttctccatcactccatcactctctggtCGCCATGACGTCTACGCTGCAAACGCTGGCGCTCAAGCTGGCCCCACCCCCTCAGGACCTAAACCCTGAGCGGTTGGACGGCTGCGAGGAGACGGGCCGGCGCTACAAAGTGGTTCCCTCCGTCGTGTGCTCCATGTGTTGCCTCTTCGGCATCATCTACTGCTTCTTCGggtaCCGTTGTTTCAAGGCGGTGATGTTCCTGACGGGCCTGATGTTCGGCTCCATCGTCATCTTCATGTTGTGTTATAAGGAGCGCGTCCTGGACACCCAGCTCAGTGTTGAGGCCTCTGTGGGCATCGGCCTGGGCATCGGCACCCTCTGCGGCCTGGTCACCATGCTGGTTCGCTCCGTGGGTCTCTTCATGGTGGGTCTCCTCCTGGGCCTCTTGGTGGCTGTGGCTACCCTGGTGGGCATGGAGGAGCTGTCCAACAGCCCCCCGAGGTCGGTCTGGGTCCCCCTGGGGGTGCTGCTCGGCCTGGGCATGCTGTTCGCCGTTCTCACCCTCCAATGGCAACGTTTCTTCACCACCGTGTCCACGGCCGTGTTCGGGGCGGCGGTGATCACCGTGGCGCTGGACTACTTTGTGGAGCTGTTTGCCCTGGTGCTGTACCTGTATGAGAGGGTAAAAGCGGCGCCCAGAGGGAGACCCGTCTGTTGGATCACCTGGGTGGTGCTGGGGGTGTGGCCTGTTCTGACGCTCCTGGGGGTGCTAATACAGTGGAAGGTGACAGCAGAGGGATACTCCCACACCAAGGTGATAATCAGTCGTCAGCAACGGCGGGTCCAGCTGATGCGTATCCGTCAGAAGGAGGAGCGGAGGGACCGCAGCAGGAAGAGGAAGAATAAGCAACAGAGAGACTCCACCCACAGCTCTCACCCTCCCAAACCCCTGCACCCCGAGCCCGCCTATCGCAGGAAACCCAACCCTATACGACGCTTTGACGGGGACGTCCTATCGCCTagttACATCCAGAGTTTCCGGGACAGGCAGGTTGAGGCCAGGCCGTATCCTGGAGGGGGCAGACTgatggggggaggaggggctCACACCAATGTGGATGTGGACTATGACTGTGGCTCCACCACGCCCCTCACTGCGGCTGCAGGCCCCTTACTACGAGTCTGAACACTCTCCTAACCACTGGTCCAACCACACCTCCAATGATCTGGCAGCCATATCACACCCCCAAAAGGTGTGACCACACCCACAACCCACCTGTGCTGCAGTATGGATCTGACCACACCCCTAAATGGTGCGACCACACCCCCAAAGGCCTGTATTGAAGTATAGGTCTGACTGACCACTCCCCCACCACAATGCTGGAGCCAATCAGAGTATGTGAATAGTTAAGGCCTGAACTCCTTTttctgtttcacacacacacaccagccacatGCATGAAAATACTGTACACACATCCACAAACACTGCAGTGGAACTGGACCtggtgaacagagagagaaatacagggCCTCCAACTGGATGGATAGATGTTACCTgaggcttctctctctccatccagtcTCCAGCCAGTCTCCATCGGGACACAGTTTAAAGAAGCATGGCTCAGGTTTCAAATGAGGAATCGTTTTACCACGGACACCGGAATACAATCCTCTCTCTTCAGGATTTTGAAAGATTCAACTTAAAGTCTTGTCTACTGCTCGGCAGTCTTAATTCCTCAAATCATTCTCTGTCGTCAACAGGCAGTTCCTTTGTACTGCATTTCTACGGTTCCATCCTTCTATGGAGTTGGGACCTTCTGATGAGAACTGACTAGTCATAAACACCCCTGCTCTGTGCCATGCCAGCCCAACAACAGATCACCTCCTGGGAAGGAGAAGAATATCTGTCTTTTAAGAGGAAGCATTATGCATTCTTGGTGCTGGACGATATCCTTCTTTGGAAAGCAGTTTGAAATCCCCCTTCTTTAAATTAAGTTGGGAGATCCGGTTGATTTACGGGTGCCTTGTGACTGCCCTTACTTGGACTGTACCACTCAGCAGTGAGATAGGGGTTATTGGCAGTGGTCACTGACTGAGAGATGTGAGAGACTATATGATAACATGCTATATTATTATAGTGACAGACAACAAAGTTGTTGCGATAGGAATGAGGGTAGGCCTATGTCTAGCAGAGGAGCAACAGTGACCCAATCAGGGAGCAAGCAAGGAAACAGTGGATGGTGATTGGTCTAACCTGCCCTGGGCTCTACCAAAAGGAACCCTACATGAAGTCAGCACAGGGTCAACAAGAGGTCAATAAAGAGTTCAAAACAGAAAGGGGTCCGAATAAACGATCGACCAATACAACGAGAGTATTGaccactccccctccactctACAGAGAGGACCATTCAGGTCACAGAGGATCGCCTACATATAGATAGACCCCTACATAATGTGCATTGGCTTTTCAATATGGGTCACAACATTCTGTCTATCGTGTATCAGTAAATGACATGACATCTATGGTTTATTATTGTCTTTGACTCAGACTGTGAAAGGGACTGTGAGTGTGAAACACATGATAAAATAATACAGGCgtgatgttattattattattattatgattatgattGCCCCATTGGGCTGTGGGTCGGGACAGGGTATGAGAATCAAATTTCTTTTCCCAGAATCTTCCAGGGGAAATCGACCTGGCTGCATGACTCAGTGGTTCCTTCCTGTTCCTgtccccctctcctgtccccctctcttaTCTGTCTCCCGTGGCTTTGTCCTCCTCAACTCACCGTTCCTATCCCCTCTAGCCTGGTCAGCCCACATCTAACAACCACGCGCAGTTTGTTAAACACTTCTCATGAATAGCTTCTTAATAATGCTA

Function

NR:

description
transmembrane protein 198-B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608781.2 False 3318 mRNA 0.52 5 21183950 21189129
XM_021608780.2 True 3467 mRNA 0.51 5 21183950 21205077

Neighbor

gene id symbol gene type direction distance location
LOC110527480 LOC106575166 coding downstream 18156 21134375 ~ 21165794 (-)
LOC110528812 LOC106575165 coding downstream 55430 21111060 ~ 21128520 (-)
LOC110528811 LOC106575164 coding downstream 73016 21080798 ~ 21110934 (-)
ly75 ly75 coding downstream 103957 21046220 ~ 21079993 (-)
LOC110527478 LOC106574231 coding downstream 162754 20951977 ~ 21021196 (-)
LOC110527483 LOC106575170 coding upstream 1354 21206431 ~ 21223145 (-)
LOC110527482 LOC106575171 coding upstream 19475 21224552 ~ 21243191 (-)
LOC110527486 LOC106575172 coding upstream 46192 21251269 ~ 21254666 (-)
cdk15 LOC106575174 coding upstream 82753 21287830 ~ 21315121 (-)
LOC110527494 LOC106575184 coding upstream 184210 21389287 ~ 21403927 (-)
G585116 NA non-coding downstream 52291 21131460 ~ 21131659 (-)
G584709 NA non-coding downstream 56157 21127559 ~ 21127793 (-)
G584673 LOC106574235 non-coding downstream 144165 21038306 ~ 21039785 (-)
G584618 NA non-coding downstream 150166 21033561 ~ 21033784 (-)
G585162 NA non-coding upstream 40514 21245591 ~ 21245934 (-)
G585167 NA non-coding upstream 54770 21259847 ~ 21260149 (-)
G585172 NA non-coding upstream 63024 21268101 ~ 21268314 (-)
G585180 NA non-coding upstream 74165 21279242 ~ 21279478 (-)
G585211 NA non-coding upstream 147054 21352131 ~ 21352574 (-)
LOC110527470 LOC103366558 other downstream 344614 20838415 ~ 20839399 (-)
otos2 LOC106575250 other downstream 405885 20772867 ~ 20778065 (-)
G583661 NA other downstream 933965 20215649 ~ 20249985 (-)
G581174 LOC101077481 other downstream 2948912 18217158 ~ 18235038 (-)
G581089 LOC106575297 other downstream 3140570 18042927 ~ 18043380 (-)
G585240 LOC106575179 other upstream 216377 21421454 ~ 21424585 (-)
LOC110527499 LOC106575189 other upstream 312318 21513832 ~ 21583054 (-)
LOC110527506 LOC106575199 other upstream 887735 22089741 ~ 22163995 (-)
G586414 LOC106574278 other upstream 1258131 22463208 ~ 22470518 (-)
LOC110527522 LOC106575212 other upstream 1405084 22609884 ~ 22620248 (-)

Expression


Co-expression Network