LOC110527483 (LOC106575170)


Basic Information

Item Value
gene id LOC110527483
gene name LOC106575170
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 21206431 ~ 21223145 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608778.2
ACTGTACTAAAAAGCCACAGATGGTAGAATGAATTTGTATGCGCTCCACTCAATATGTGTAGCCCTGCTGCGGTGACCAGGCCGCTCCGACTCACAGTTCACCACCGCCAGAAACTGTCAGTGGCGCTGGACGGCTTTGTGTCTGGTGGTCGGAGGTTCAAGTCCGGTGCCAGCAGACACGTGGGACAAAAATTGCAGACAACGATAGAAACAACTCCGGAGAAGTGCAAAACAATAGACGATCTACACGGACCTAGTTTGGCCACGACTGTGTATTGGCTGTTCGTGAAGGGATATGCAGATAAGAGCCATGCGATGCAGGTTGAACACAAGAAACTGTACGGGCCCATCTGGCGCTCGCGGTTCGGCCCGTTTGATGTGGTGAACGTGGCGTCTCCAGAGCTCATATCCCAGGTGATCCGTCAGGAGGGCCGCTACCCGGTCCGGACAGAGCTGCCACACTGGAAGGAGTACCGCGATATGAGGGGACAGGCCTATGGACTCCATGTGGAtACAGGCCCACAGTGGCACCGTATCCGTAGTGTCCTAAATCCAAAGATGCTGAAGCTAGCGGAGGTGTCTGCGTACGCGCCTGTCATCCACCAGGTGGTAGGGGACCTGCTACAGCGTATTGAGAGCCTCCGCCTCCGCAGTCAGGACCACACCACCGTACCAGACCTCACCGCAGAGCTCTACAAGTTTGGCTTTGAAGGGATCTCTTCCATCCTGTTTGAGACGCGGCTGGGTTGTCTGCAAGAGGAGATCCCTAAGGACACGCTGAAGTTCATCGCTGCAGCCAACAACATGCTAACCCTGTCTGAGACCGTCCTCTTCCTCCCGCTCTGGACACGCAACGTCCTGCCCTTCTGGAAACGATTTGTCCAAGCCTGGGACGACCTGGTGGCTGTAGCTCAGCGTCTCATTGACCATAAGTTGGCGCAGATGGATGCCCAGGTGCTGGCTGGGAAGCAGGTGGAGGGGATGTATCTCACCTACCTGCTGTCCTGTGATAAACTGACCCTGGAAGAGGTGTACATCAGCATCACAGAGCTGTTGCTGGGCGGAGTGGACAcgACGTCCAACACCTTGTCGTGGGCATTGTACCAGTTGGCTCGCGACGCCGCGTCTCAGGACAGGCTGTACCGTGAGATCATGTCTGTGTGTCCGGGAAGACAGCAGCCTAGATCAGAGGACCTGAGCAGGATGCCCTACCTGAAGGCTGTCATCAAGGAGACTCTGAGgaTGTACCCTGTAGTTCCAGGGAATGGCCGTCTAACCGTAGACAATGAAGTTGTTGTGGACAACTACTGGTTCCCAAAGAAGACCCAGTTCCATCTCTGTcactatgctgccagtcatgACGAGGGGGAGTTTGTGGATGCAGAGTGTTTCAGGCCTGAGCGTTGGCTGCGAGGGGACCCAGAGTCGTACCAACACCACCCCTACAGCTCTATACCCTTCGGGGTGGGCGTGAGAGCCTGTGTGGGCAAGAGAGTGGCAGAGCTAGAGATGTACTTTGCCCTCTCCAGGCTGATGCAGCATTATGAGATCCAGCCAGAGGATGGGGCCCCGACCACAGAGCCCAAGACTAGAACACTGCTCATCCCATCCAAACCCATCAACCTGCGCTTCCTACCCCGAGCCTGAGGAGGGTGCCAGGGAGTTATAGAAAGGGATTGACAGGAGGGTCTGgtgttgtgctgtgctgtggtAACCTCCAGTCCCCTAGATCCCCTTAAACATAGCCGATTGAAGTAGTTTGGGTGGGGGGAGGGGATGCTgaaaaataaagtttgttcatgCTACAGACAGCTATatcggtctgctaatacaggactagtaaaggctcagtgcacaacttttgtgaagaaattatacccccccccccctcccctcaaatGCCCTCAAACCAAATCTGATTCATATCAGGTTATTctgacacggaacccaaaccggctgcgagCGTGCgttatcgtgcatacatttatttgtcCCGCTACACCAaatgcgatcacgacacgcaggttaaaatataaaaacaaactctgaaccaatgacattcat

Function

NR:

description
cytochrome P450 27C1-like

GO: NA

KEGG:

id description
K00488 CYP27A1; cholestanetriol 26-monooxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608778.2 True 2064 mRNA 0.54 9 21206431 21223145

Neighbor

gene id symbol gene type direction distance location
LOC110527485 LOC106574242 coding downstream 1354 21183950 ~ 21205077 (-)
LOC110527480 LOC106575166 coding downstream 40637 21134375 ~ 21165794 (-)
LOC110528812 LOC106575165 coding downstream 77911 21111060 ~ 21128520 (-)
LOC110528811 LOC106575164 coding downstream 95497 21080798 ~ 21110934 (-)
ly75 ly75 coding downstream 126438 21046220 ~ 21079993 (-)
LOC110527482 LOC106575171 coding upstream 1407 21224552 ~ 21243191 (-)
LOC110527486 LOC106575172 coding upstream 28124 21251269 ~ 21254666 (-)
cdk15 LOC106575174 coding upstream 64685 21287830 ~ 21315121 (-)
LOC110527494 LOC106575184 coding upstream 166142 21389287 ~ 21403927 (-)
LOC110527496 LOC106575186 coding upstream 216377 21439522 ~ 21441697 (-)
G585106 NA non-coding downstream 11271 21132657 ~ 21195160 (-)
G585116 NA non-coding downstream 74772 21131460 ~ 21131659 (-)
G584709 NA non-coding downstream 78638 21127559 ~ 21127793 (-)
G584673 LOC106574235 non-coding downstream 166646 21038306 ~ 21039785 (-)
G585162 NA non-coding upstream 22446 21245591 ~ 21245934 (-)
G585167 NA non-coding upstream 36702 21259847 ~ 21260149 (-)
G585172 NA non-coding upstream 44956 21268101 ~ 21268314 (-)
G585180 NA non-coding upstream 56097 21279242 ~ 21279478 (-)
G585211 NA non-coding upstream 128986 21352131 ~ 21352574 (-)
LOC110527470 LOC103366558 other downstream 367095 20838415 ~ 20839399 (-)
otos2 LOC106575250 other downstream 428366 20772867 ~ 20778065 (-)
G583661 NA other downstream 956446 20215649 ~ 20249985 (-)
G581174 LOC101077481 other downstream 2971393 18217158 ~ 18235038 (-)
G581089 LOC106575297 other downstream 3163051 18042927 ~ 18043380 (-)
G585240 LOC106575179 other upstream 198309 21421454 ~ 21424585 (-)
LOC110527499 LOC106575189 other upstream 294250 21513832 ~ 21583054 (-)
LOC110527506 LOC106575199 other upstream 869667 22089741 ~ 22163995 (-)
G586414 LOC106574278 other upstream 1240063 22463208 ~ 22470518 (-)
LOC110527522 LOC106575212 other upstream 1387016 22609884 ~ 22620248 (-)

Expression


Co-expression Network