LOC110527482 (LOC106575171)


Basic Information

Item Value
gene id LOC110527482
gene name LOC106575171
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 21224552 ~ 21243191 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608777.2
ACATTTCTCTGACATCAACAAACTTGTGTTGTGGTTGGACTCTTCCAACTAGGCTTGCTGTTATTATTGGGGGAAGATTGCAGCTGAGCTGTGTTGGTAGAACCGTTTTCATGTCGCTAGGTTTACAAATCAAACAGAAGTGTGGATTAAGTTATCGTCAACGGATAGAtaatcaaatggttgttttaatTTGTGCACGTCGCCATTGTCAGTTTTCACATCGAAGAACGTCTTGCACAACACAAGCGTTAGTGATATCTTGGCCTGAAACTCGGGGCCTTGGACTCAAGTAAAGTTCGAAGCGGACTCTAAACTTCTGCTTTCTCAAAGACCGCTATCCGCGGGGCCGGGGCTCTTGTCGCTGGCCCTGTGGATGAGGAAGTGAAGATACAGAATCCACCCAGATTTTACAGGAGAAAGGAACCCCTTTGATGGGAGAATCCTCTATCCTGGACTCCTGGGTGAATCAACGTGTCAAGATGAACGAACAGGAGGCGCTGAACTCTATAATGCAGGACCTGGCCGAACTGCACCGCTCTAGCCGCCCTGCCATGACCCTATCTGACCTGGGCAAACCCAAGGCCTCTTCACCCAAAAATCAGaACGATGTGCGAGTGAAGTTTGAGTACAAAGGGGAGAAGAGGATCCTGCAGTTCTTTCGCCCAGTCAGGCTTGATGACCTGGGGAACAAAGCCAAAGTGGCCTTCGGTCAAGCCATGGACCTGCATTACACCAACAATGAGcTGGTGATTCCTCTGACCACTCAGGATGACCTGGACAAGGCCGTGGAGCTGCTGGATCGCAGCGTCCACATGAAGAGCCTGAAGATCCTCCTGGTGCTCCAGGCCTCCTCTCAGACCTCCACGTCCAGCATGGACCTGCTGCCCCCACACGAAGACCTGGACAACACCCGCTTCAGGGCCACAGACAATAAAAGCATGCTGGCTTTGATAGGGTCCCACTCCGGGGACCGCAGCTCTCCCCCTCCAGGCTACATTCCCGATGCCCTCCAGCAGGTGGCCAGAAACGGCTCCTTCACCAGCATTAACAGCGAGGGAGAGTTCATTCCAGAAAGCATGGACCAGATGCTGGACCCTCTGTCAATGAGCAGTCCAGAGAACTCTGCATCAGGGAGTTGTCCCTCACTGGACAGCCCACTGGACAGTGATAACTATCCTAAGTCCCGTATGCCCCGGGCACAGAGCTACCCAGACAACCACCAAGTTTACCCAGAGTATGATATTCCAGTGTTTGAGAAGTCGGGGAAAGGGGGCACTTACCCAAGGCGATACCACATTTCCTTTGGCCTTCAGGACTACAGTGATGGGCGTAAGACGTTCCCTCGAGCGCGGCGGACCCAGGTCCACGGTTTCCATTCCCCGGTCAGTTTCAGCCCCACAGAGCAGTCTCCCAGCACCAGCAGTGGCAGCAGCATATTCACCCCAGACCTGGAGGAGCCCGGGGGTCGCAGACGCAGGGGCAGCGACATCGAACCCAACCCCACCCTCTCCGTTATGGACATCAGCCCACCCAGCCGCTCTCCACGTGCCCCTACGAACTGGCGGCTAGGTAAACTGCTGGGTCAGGGTGCGTTTGGCCGTGTCTTCCTGTGCTACGATGCAGACACGGGCAGAGAGCTGGCCGTTAAACAGGTCCAGTTTGACCCAGAGAGTCCCGAGACCAGCAAGGAGGTAAGTGCCCTGGAGTGTGAGATCCAGTTACTGAAGAACCTGTGCCATGAACGGATCGTCCAGTACTATGGCTGTCTACGAGACTCCAACGAGAGAACTCTGTCCATCTTTATGGAGTACATGCccgggGGCTCCATCAAAGACCAGCTGAAGTCGTACGGGGCCTTGACGGAAAACGTGACGCGTAGGTACACCCATCAGATCCTGGAGGGAGTGTCCTACCTGCACAGCAACATGATCGTCCACAGAGACATCAAAGGGGCCAACATTCTGCGGGACTCTGTGGGAAACGTGAAGCTGGGGGACTTTGGGGCGAGCAGGCGGCTACAGACCATCTGTCTGTCAGGAACAGGGATCAAGTCAGTGACTGGTACTCCCTACTGGATGAGCCCAGAGGTGATCAGTGGAGAGGGCTATGGCAGGAAGGCTGATATCTGGAGTGTGGGTTGCACGGTGGTGGAGATGCTTACCCAGCGGCCCCCCTGGGCTGAGTTCGAGGCCATGGCGGCCATCTTTAAGATCGCCACCCAGCCCACCAACCCCTCGCTGCCCGCCCACGTCTCCGACCATGGCCGTGACTTCCTCAAGCGCATCTTCGTGGAGACCAAGCTGAGGCCCTCGGCCGACGACCTTCTGAGGCACATCTTTGTTCACTAgcccctttccccctgacccctgAACTGCCAGAGATGTCCTTAGATTCGCTGCCTCTGACTCCCCCTGACTCCACCCTCCCAGCTCCAGACAGAAAGCCCCCATTGGACCAGAGAGGACTTGGTGGGAGGTATCCATCTGGTGATTGGATGAGGTGGGTAGCGGTGGGGACTACAACTCCTGCGTCTCTGTTTTTAGGAGACTGGCAAGGAGGAATTAATGAAATAACTCATTTAGAGAAAAAGTTGCACCTTAATTTCAGAAATATGGTAAGTTGCTCAACCAAGATGACAAAATAAccttttttgaaaatgtttttatgATTAATATCTCCTGCTTTTGATTGTGGAGTGTGACTCGGTCACTCTGCACTTAGCTCACTGAGTCAACGTCTGTGTTTCTGATCTGGACCTTAGTGGAGATTTGAGGTGATGATCATGATAATCTGGGCCACGTTTAGTAGGCAAACGTTGTGGAACACATTGCAGATAGAGGTGGCATGACTAGAGCCGAAACAATTCCTTATTCTACATATCTTAGAGGAAGGTTTGTTCTACATGCTATATCGATTTGAGCGTTGCATAACGTTGTGTCCTGCTGAACGCACCCCTAGTGTGGTCCTGACTCGACCCAGAATGTACAGCTGAAAACCCATAGCACGCTGCTATCGAATCCACAACCAGAACACCGGGTGAggagaacaccccccccccccccccccccccaccaccagctCTTCCTGTCACACTGCTGCCTACGTTGCTCCCCCCTCACTTGCACATTCACAGTCCATGTAGAGCACCCAGAACTCAACGATTCTTCATTCTCTCGATGCTGAAAAAATGCTTTTGTTGCTAGGATCCCTCGCTTTACTTCAGTCTGTCCCGCGACAGTTGTGAGTGTCCGTCTGTTCCTCTGCTGTGTCAGTCAGGTCgcctgtctgtcagggtctgttgTCAAATCCCCTCCCAGCCTTTTGTTCTTTGCCTTGTGCCTTTTTTAGCAGTGTAGGAACATGTCTAGTTGAAACGTTTTCGGGTACGCATCAGACGAGTACCAGCCTATTTACGGTGCGGATCATATCCAAGTGTTGTGGCACTGTTCTCTGCCTTCTCCTCACCAGGGGTCATAGGTCTCTTACTGACCCCAGATCAGATACAATCGAGACACACCAAAGCAGAAACCTAGAGTGCTCATCATAATGGGTTTGGTGCTTCAGTTCTTAACAGAAATGCATCTGAACTCTGTGATTGGCCGTGTGGTACTATGATGCCAGTTGATTGCCTAAAGTTTAGGCAGGCCTTAGTTGATTGGTCAAAGGTACATTATGGCATTTTAAAACCGGAAGAGTGGAGAAACGCTAGCCAATTAGGATGCTTGTTACTCAGTTGTAGGCATACTGTATGTTAATATCAGGTACTACTTTGTGCTGAAGCACTATGTTAGCCAGTTTACATCTTGACtaagatactactgcactgaACAGTACTCAGCAAAAAGCTCTGCAATTATGCCAATATCAATACTCAACAGTACTGGTGAATACTCAGTTATACTCCACAGTGTTGGACACCATCTGGGACTATTGTGCCCTCTTGCCCTACAATGCCTTGCGAAATAAAGTACTGGTATGTTGCAGTAGTATGTGCTGTGTCATGTCTCACATGCTGCTCCTCTCAAACACTCCTTtagcatgcgcacacacaccagAGTAGTTTTCAGTATGTTTCAGTTGGGGATGGTCTCGACTACTCGATTCTCGATTTGTATTGGAAATTTGCAAATTCAACTATTTAGCAGGTTCAAATGACAACATTTCAAACTCTAATATGTGTTTTATTGTTTGGAGTGTATCAAGTGCACTGAAAAtatctcatttaaaaaaaacatgaattgaaGCAATCGATAGCATACTGCAAGATGGTTTTGCCAGCAGCCCTGTTTTGTACTTGCATGTGAATACTCGAGTACCTGAAATGGTTTGCATGAGAATACTCAGACATTTTTTTCCAGATGTCAATCCCTGGTTTCAGTGCTGTACTCAGCCATACCTCAACATTACTAACAAGTAGACTTATCTAAAATCACAGCAGTGCTAACTGTTTTGTGCTGCTTTGCGCAGTGAATGTCAGAtatattttacccttattttcTAGATGCAGTAGGATAGGTATTGGATGACGATCTTGTCCTTTTTTAAATTAGTGATGGAAGTGGCTGTCTATTTGACTCCAGGGGGTGTGGTTGTCATTGCCTGTAAGCTAACCCATAGGTACTCACGGTATGGAAACACAAGCTCTTTTGTGTGAGGAGTTCAGGAAACCTACTGATCAACTAGCCTGTAATATGATCGAGCATTTCTCCCATCACCTAGGCATTAACTCCCCCTCAACCATAGGTACTAAATCCGGTCTCTCTCGCCCGCTGAAGGAGTGCTTGTTAAACTGGTTAAGAAAAATAATTGTCATTGACTCCACTGTTCTGGATTCTTTTAGTCTGAGAAGCAAAATAGCGACCGTGCGTGTTATCGGCTAAGCTGGTCCCCAAGAAGCTAGACCCCTTCCTTACCCTCCTGCATTGCCTGTAAAAATGAAACTGAACATTTCCATTGGCACTGGACTCGCTGAGATCAACTGTCAACAGAAATAGTGACGCCATATGCACTATTTAAAACTGGTACATAATGCGTTCTCTACCGCTCGCTTCTTCAAGGTTACTCATTGGACGACGGACTTCTACTCTGTTGAGCATAGACTGTCTTGTGTTGTTTCTGTTAGCGATGACCTTTTTTGCACATTTTTTAAAGACTTCAGATTTTTTACACTGATTGTAATACTTTTGCTTCTGTGTATGTGGGTGTGAGCAGATGTGTGTGAATGTTGTATGTGAATGTCTGTGGTTGTGTTGCACAAGGATCTTAGTCAGGAATGTAATGTTTCATTCTCACCACCAGGTGGCCTCATTCACCATTGTGGATTAACACTCCCCTGTTGAAATGAGAAGTCTATTCTAAATCTGAACACAGACTTGGTGGCTGTCCTTCATTTGCTTTTTAATTTCACACCCCCACTCAGAGGGACTGTTAGTTAGTGATAGTAGTGTATGGTAGACGAGGCCTGAATCCCAAAAGCCCTGCTCTTTACTTgtgtagatctgagaggattggacaggtggGTTTGGGATTGGGGAAAGACTTAAAGTAAAAGGCAGTGAACTGAGATGCATATGATAAGGAACCACATGGTATTCCCCTGCTTCTTCTAGAAAACCAACAAGGTACAGACGAACTATACCAATATGGTCCAATATGTGCTTTTATAAGCAACTGCTGACACTCCAGGGTGCTGTAAGCacttctctcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcttgactgTGTCTGTACTGCAATTTGTGCTCAAAGGACACTTGGGGGTGCCCAAAATGCCTTGCGCATTCggactgtaaaaaaaatatatagttgaAGAAAAATAATGTGCCCCTTTTTAAAAAGAAAGATTACACTTATATCCCACACATTTGTTTTCTGTGTATTGTAAAAGAAGCCATGTTTATAATTCCATTTGGTTTGTGACCAATAAGCCTGTTTATATCAGAACTGTATATCAGTGGTATGCatcatttttttaatatatatttttatttttaaatgggaGATTTTATGCATGGTTGGATCCTGAGGAGAGGTACAATGGTGGCGGGAGGCCCATTGGttttagcctgagtgccagtctgtctGTGCCATCATACTAATTCCATGTCACTCATTGTTTGTCTTGTCAAATGATAGCAATGGAGTAAACaagaacagatctgggaccaggctaaggccTATTGGCTCCTCTGAATGAATGCTGAAGAGAGGAGACATCTTGATGGAAAAGGGTTGGGAGAGACTGTCAGTCTGTTGGCACTTTGATGTGTTAATAATTATGATGAcaatgaaaataataaaatatatttatttcac

Function

NR:

description
mitogen-activated protein kinase kinase kinase 2-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K04420 MAP3K2, MEKK2; mitogen-activated protein kinase kinase kinase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608777.2 True 6341 mRNA 0.48 15 21224552 21243191

Neighbor

gene id symbol gene type direction distance location
LOC110527483 LOC106575170 coding downstream 1407 21206431 ~ 21223145 (-)
LOC110527485 LOC106574242 coding downstream 19475 21183950 ~ 21205077 (-)
LOC110527480 LOC106575166 coding downstream 58758 21134375 ~ 21165794 (-)
LOC110528812 LOC106575165 coding downstream 96032 21111060 ~ 21128520 (-)
LOC110528811 LOC106575164 coding downstream 113618 21080798 ~ 21110934 (-)
LOC110527486 LOC106575172 coding upstream 8078 21251269 ~ 21254666 (-)
cdk15 LOC106575174 coding upstream 44639 21287830 ~ 21315121 (-)
LOC110527494 LOC106575184 coding upstream 146096 21389287 ~ 21403927 (-)
LOC110527496 LOC106575186 coding upstream 196331 21439522 ~ 21441697 (-)
LOC118965268 NA coding upstream 204516 21447707 ~ 21448803 (-)
G585106 NA non-coding downstream 29392 21132657 ~ 21195160 (-)
G585116 NA non-coding downstream 92893 21131460 ~ 21131659 (-)
G584709 NA non-coding downstream 96759 21127559 ~ 21127793 (-)
G584673 LOC106574235 non-coding downstream 184767 21038306 ~ 21039785 (-)
G585162 NA non-coding upstream 2400 21245591 ~ 21245934 (-)
G585167 NA non-coding upstream 16656 21259847 ~ 21260149 (-)
G585172 NA non-coding upstream 24910 21268101 ~ 21268314 (-)
G585180 NA non-coding upstream 36051 21279242 ~ 21279478 (-)
G585211 NA non-coding upstream 108940 21352131 ~ 21352574 (-)
LOC110527470 LOC103366558 other downstream 385216 20838415 ~ 20839399 (-)
otos2 LOC106575250 other downstream 446487 20772867 ~ 20778065 (-)
G583661 NA other downstream 974567 20215649 ~ 20249985 (-)
G581174 LOC101077481 other downstream 2989514 18217158 ~ 18235038 (-)
G581089 LOC106575297 other downstream 3181172 18042927 ~ 18043380 (-)
G585240 LOC106575179 other upstream 178263 21421454 ~ 21424585 (-)
LOC110527499 LOC106575189 other upstream 274204 21513832 ~ 21583054 (-)
LOC110527506 LOC106575199 other upstream 849621 22089741 ~ 22163995 (-)
G586414 LOC106574278 other upstream 1220017 22463208 ~ 22470518 (-)
LOC110527522 LOC106575212 other upstream 1366970 22609884 ~ 22620248 (-)

Expression


Co-expression Network