sumo1 (sumo1)


Basic Information

Item Value
gene id sumo1
gene name sumo1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 21246358 ~ 21249349 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981861.1
GAAGAACCAGAACTATTCACTTTCCGGGTCAGTTTATTAATGGTACCTGCTTCTCAAAACAGCAAGAATCCCGAGGCAGTGTATAAAATTTGAACTAAACGttttgtgaaataaaataaacatcaCAAGAAAAATACCATGTCAGACACGGTAGGGGAGACAAAACCCTCAAGTGGAGATGGAAGTGAGAAGAAGGATGGAGAGTACATTAAACTGAAGGTGATTGGTCAGGACAACAGCGAAATTCACTTCAAAGTGAAGATGACAACACATCTAAAGAAGCTAAAGGAATCTTACAGTCAAAGACAGGGTGTACCAATGAACACCCTAAGGTTTCTTTTTGAAGGACAGAGAATCTCAGACAACCAAACCCCCAAAGAGctTGGAATGGAAGATGAGGATGTCATTGAAGTGTATCAGGAACAGACCGGTGGACTTTGGAATGATTAGACttgcagtattttttttctcatttagaATTTTGTATGTATTTTGCTTTTGTGCTTTGCACCATCTGGATCACACACTCTATTGGGGCTTCCATGTGCGAGGGCACAAAGAACGACTGTGTTAGAATGGATAGACGATCTGTTTCCTCCTTTTAAACACCTCGCACAGTCATTTCTTCTCCCTTCCTTTACAATGCAGGTAACATTGTAGTGCAGACAGTGTCATAGCTGAATGTCCccctattgagagagagagagaacacgcaTACAATGACTGGTTTTCTCTAGACTCTGCTACACACGCCTCTTTCGCACCTAAAGTTTGAATATGCCACCTCTGAATGCTAAAGCATTGTTTTGAATCTTTAACTATCCCACGTTTCCTACCACTGATGGATATGGTCTAATGATATTTAAAATATGAAATGTTTTTATGATCAGGATGTATATTTTTGCATCCAGTATTTGTGTGTAATAATTCTGTCCGTggtcagggttccccaactggcaggcTGAATTTGGCCCGCGGGTGATTTTATTTGCCCGCGGGccaaaaacaatatttttaattgttggacataagactgtaaaaacaccagcgaACCTGCtacaagtgattttaattttggatatTTGTTTCATGTAAGCAAGGCTTGAAATTATGTTTCAGTCAAatatatatctgtttgggcttcttggggtcaatttgcagtctCTAAATTATtcgtaattatgttctggccccctgaCCACCCGTTCAAGAAAAGAATcagcccgtggctgaatctagttgatgatgccTTTCCTAGGTGTTCTTTTTTATTTCTATTTGAATTATGTTTAAGTTCAGATAATTTCAAGGGGTTAAAGTTTCTGTTTAATCTCTGGCTTCTTCTTGGATTTAAATGTTTGTCTCCTTTTTTTTAATCAAGATAATCTTGCTGTATTGAACCACAACAGTAGCCACACATAGAAATGTCAATGCAACAAATGACTCCTTATGGAGGCTTTGATCCGGATGGTTGGAAGCAGATCATTTTTCTTTTTTTGAATAAAATGTTTAACAAAAACA
>NM_001160594.1
GGGTCAGTTTATTAATGGTACCTGCTTCTCAAAACAGCAAGAATCCCGAGGCAGTGTATAAAATTTGAACTAAACGttttgtgaaataaaataaacatcaCAAGAAAAATACCATGTCAGACACGGAGACAAAACCCTCAAGTGGAGATGGAAGTGAGAAGAAGGATGGAGAGTACATTAAACTGAAGGTGATTGGTCAGGACAACAGCGAAATTCACTTCAAAGTGAAGATGACAACACATCTAAAGAAGCTAAAGGAATCTTACAGTCAAAGACAGGGTGTACCAATGAACACCCTAAGGTTTCTTTTTGAAGGACAGAGAATCTCAGACAACCAAACCCCCAAAGAGctTGGAATGGAAGATGAGGATGTCATTGAAGTGTATCAGGAACAGACCGGTGGACTTTGGAATGATTAGACttgcagtattttttttctcatttagaATTTTGTATGTATTTTGCTTTTGTGCTTTGCACCATCTGGATCACACACTCTATTGGGGCTTCCATGTGCGAGGGCACAAAGAACGACTGTGTTAGAATGGATAGACGATCTGTTTCCTCCTTTTAAACACCTCGCACAGTCATTTCTTCTCCCTTCCTTTACAATGCAGGTAACATTGTAGTGCAGACAGTGTCATAGCTGAATGTCCccctattgagagagagagagaacacgcaTACAATGACTGGTTTTCTCTAGACTCTGCTACACACGCCTCTTTCGCACCTAAAGTTTGAATATGCCACCTCTGAATGCTAAAGCATTGTTTTGAATCTTTAACTATCCCACGTTTCCTACCACTGATGGATATGGTCTAATGATATTTAAAATATGAAATGTTTTTATGATCAGGATGTATATTTTTGCATCCAGTATTTGTGTGTAATAATTCTGTCCGTggtcagggttccccaactggcaggcTGAATTTGGCCCGCGGGTGATTTTATTTGCCCGCGGGccaaaaacaatatttttaattgttggacataagactgtaaaaacaccagcgaACCTGCtacaagtgattttaattttggatatTTGTTTCATGTAAGCAAGGCTTGAAATTATGTTTCAGTCAAatatatatctgtttgggcttcttggggtcaatttgcagtctCTAAATTATtcgtaattatgttctggccccctgaCCACCCGTTCAAGAAAAGAATcagcccgtggctgaatctagttgatgatgccTTTCCTAGGTGTTCTTTTTTATTTCTATTTGAATTATGTTTAAGTTCAGATAATTTCAAGGGGTTAAAGTTTCTGTTTAATCTCTGGCTTCTTCTTGGATTTAAATGTTTGTCTCCTTTTTTTTAATCAAGATAATCTTGCTGTATTGAACCACAACAGTAGCCACACATAGAAATGTCAATGCAACAAATGACTCCTTATGGAGGCTTTGATCCGGATGGTTGGAAGCAGATCATTTTTCTTTTTTTGAATAAAATGTTT

Function

symbol description
sumo1 Predicted to enable protein tag and ubiquitin-like protein ligase binding activity. Acts upstream of or within chordate embryonic development and definitive hemopoiesis. Predicted to be located in nuclear stress granule. Predicted to be active in nucleus. Predicted to colocalize with PML body. Is expressed in brain; cranial neural crest cell; digestive system; eye; and pectoral fin bud. Human ortholog(s) of this gene implicated in orofacial cleft 10. Orthologous to human SUMO1 (small ubiquitin like modifier 1).

NR:

description
small ubiquitin-related modifier 1

GO:

id name namespace
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K12160 SUMO, SMT3; small ubiquitin-related modifier

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981861.1 False 1521 mRNA 0.39 5 21246358 21249349
NM_001160594.1 True 1480 mRNA 0.39 5 21246383 21249339

Neighbor

gene id symbol gene type direction distance location
LOC110527484 LOC106574241 coding upstream 63014 21176983 ~ 21183344 (+)
LOC110527479 LOC106575163 coding upstream 201426 21033870 ~ 21044932 (+)
LOC110527473 LOC106575157 coding upstream 304633 20893808 ~ 20941725 (+)
LOC110528809 LOC106575158 coding upstream 352679 20874252 ~ 20893679 (+)
LOC110527474 LOC106575156 coding upstream 372443 20869463 ~ 20873915 (+)
LOC110527488 LOC106575173 coding downstream 65657 21315006 ~ 21337432 (+)
LOC110527489 LOC106575175 coding downstream 90343 21339692 ~ 21354616 (+)
LOC110527490 LOC106575177 coding downstream 105787 21355136 ~ 21364322 (+)
LOC110527492 LOC106575178 coding downstream 119352 21368701 ~ 21374052 (+)
LOC110527491 LOC106574254 coding downstream 124853 21374202 ~ 21388754 (+)
G584792 NA non-coding upstream 2185 21243974 ~ 21244173 (+)
G584714 NA non-coding upstream 108852 21132659 ~ 21137506 (+)
G584711 NA non-coding upstream 115130 21130910 ~ 21131228 (+)
G584671 NA non-coding upstream 118161 21127904 ~ 21128197 (+)
G584645 NA non-coding upstream 161343 21084461 ~ 21085015 (+)
G584795 LOC106575172 non-coding downstream 1925 21251274 ~ 21254524 (+)
G584830 NA non-coding downstream 18495 21267844 ~ 21268087 (+)
G584808 NA non-coding downstream 139946 21389295 ~ 21392225 (+)
G584820 NA non-coding downstream 144534 21393883 ~ 21438876 (+)
G584881 LOC106575186 non-coding downstream 191001 21440350 ~ 21441601 (+)
G584643 NA other upstream 163743 21080828 ~ 21082615 (+)
G583605 NA other upstream 1006561 20238911 ~ 20239797 (+)
LOC110528807 LOC106574429 other upstream 1224631 20017855 ~ 20028775 (+)
G581976 LOC106581475 other upstream 2269359 18976678 ~ 18976999 (+)
G580997 NA other upstream 2753449 18492227 ~ 18492909 (+)
G585573 NA other downstream 703680 21953029 ~ 21953269 (+)
c7h10orf53 cssa17h10orf53 other downstream 1107234 22356500 ~ 22360232 (+)
LOC110527523 stat1-2 other downstream 1437140 22684527 ~ 22722539 (+)
G586685 NA other downstream 1760712 23010061 ~ 23015120 (+)
LOC110527540 LOC106533352 other downstream 2362003 23609520 ~ 23621369 (+)

Expression


Co-expression Network