LOC110527489 (LOC106575175)


Basic Information

Item Value
gene id LOC110527489
gene name LOC106575175
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 21339692 ~ 21354616 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608787.2
tacttttcgtcagccaacaagatgaataggcctaacgaacagcaaaagcactagcctatgtcaatgtactatcccccatagtataGTTGAGGTTTGAAAGCGCGAATATCTTTCAAATATCCAACCTGAAACTGTCTTTACCTAGGTCATTCTTCGCGAAGTCGACTGCGGAAAATGACAAAATCGCGGCAAGTGAAGCCTCCGTATGGATAAGGCAAGTACAGCCTCCGTTAAACACCGTATGGTACAAGCTACAACAGCACCGACGGTCTTGTTAAGCTCAACGGTGCTTTGTTTCATGACTCAAATGTTGTGAAGATGCACTTGGGAAGAACGAAAGCTGAGATAATTACAATGAATGTTTTAGGACCAAAGACTGCAGGATATTTTGGATGATCTGTCCCCGACCGAAGTTCGCTACGTAGTAAAAGCACAGACCTGTTACCAGCGAATCCCCTGGGGACTCTCACTCTGCGGCAAAAATTGGTAAACTGTATTACACAGAGGACAAATCCTCCTCTGGAGCTAAGTATTAAGGGTTGAAGAAGCGAGTCAAAGGGACTGGAAGAAAAGAGACCACAGAGGTAAGTAGTGAGCACGCAGGAATGTGTTAAGTCTTTTACAGTTGGCTCCGAGCCCAGATACAGTAGACTCTCACTCTGACTGTTGAGGTGGGATTGGGCTCTTCTAGTTTTCAGGATTTAAAAAAATGGTTTTCCCACCAAGGTGATCCACTGTTTTTAATCCAAGTATTACTACATATTAGAGTCAATTGACGTACCCATCCGTCAATCTAATTAACATGATTAAAACATCCCCATACTTCTGTTTAAGATGTAACACTACATCACCGGTATTGTTCTGTCTTTCTGTTGAATGGGTGACGTTGACCGACACAGGGACATGGTAGCACGTAGAATACGGAATTAGAAGAGACTGCTTAAGTGGGGCATTGACTTTTGAACCCTGAGTTTATTTCACACACAGGGCATTAAATTAACCTTAGGGTTTTTAATGTGTGACAGTGGAGGCTGTTTTTACCTGGGAAGTTATTAACACCCCGTTGACATCCATCATAGCAGAACTGATGACTATGTATATAGAGGTCAGAGTCTTATTAATCTGGATTAATGTTACGTTATTGTTATCGAAAATGTGTAAGAGGATTCGATGTTATCATTCAGCTTTTAGATGAACTACTAAGCAAAGAATATATTTTTATCTCATTTCTCTCTTTCCAAGGTCTGGGTTGGGGTGAATTTCCAGCAGTCAGTGCTGGGTGATCCCCATGAGGCAGACTGTGGAAGCCGAGGTGGTGATGTCGTCCCCTAGACTGAGTGACCATGGGCTAAGGCAGATCCTGTCTGACGTGGTAGAGGAGGTGAAACATTCCATCAATAAGGAAATCAACGGGGCAGAGCTCCTATACAGCCTCCTCAATGCCCCCTGGCTCAAGTCCCTGCTCAAAGTGCATGAGTGTCTGCGGCAACACCAGAGAGAGCCTCCTGCTCCCTTCCTACCgtacacaacacagctcatcCAACAGATTCTGACTGACATGAGAACAGTTCGGAACACTTCTGCTGAGGCCAGGGAGCTTTACAGTCTCCTCAGGGGACCACACCTCCAGGCTCTGATATCAACCCATGATATGGTGGCCCAGAAGGATTATGAGCCTGTGCTGCCTCCTATCCCTGACAACCTCCCTGACGATGAGGAGGCCATGAGGATTGTCTGTCTGGTGAAGAACAAGCAGCAGCTGggAGCCACGATAAAGCGAAATGGGATAACAGGGGAGATCTTTGTGGCACGGGTGATCCATGGAGGACTGGCAGACCGCAGCGgtcTGCTACATGCAGGGGACAGGATCACAGAGGTGAATGGTTACTCCGTAAATGGCCTGGAGCCTGAGCAGGTCATTGAGAGACTGGCCCGGTCTCAAGGCACCCTCATGTTCAAAGTGGTTCCCATCACAGATAGACCAGTCAACAACCAGACGATACTGTATGTGCGTGCCATGGCAGACTACAGTCCCCAGCAGGACCCGGCCATCCCCTGCGCCGAGGCAGGTATGGACTTCAGGAAGGGAGACCTGCTGGAGATCGTGGACCAGTCAGACTCCCTCTGGTGGCAGGCCAAGAAACTACCCAGCACCTCGGCCTGTGCTGGCCTTATCCCCTCCACCAACCTGCTCAGGAGGAAACAGAAAGAGTTCTGGTGGTCTCAGCCCTACCAGCCGCACACCTGCATCAAACCCTTGAGCACTGTGAATGAAGAGGAAGACCTGATTGATGAAAAGTGTGTTGAAGCTGATGAGGAAGCTTTTGAATCTGAGGAGCTAAGAGAAGAGGAGGGTGAGTTCAGCACTAACATCGAGGGGATCTATCTAACTGGGTTCAGACGTAGCCTGCGTCTGTGTCGGCGCCAGTCCCTAAGCACAAGCTCCAGTCAGCAGTCCTTCTACACACGCAGCGGCTACAATGCCCTCAACAACCCATACGAAGAGGTGGTACGATACCAGCGCAACCCGCAGGACAAACACCGCCTGGTCGCCCTCGTGGGTCCCTCTGGCGTTGGAGTGAACGAACTTCGCAGACGGTTAATCAAAATCAACCCAGTGACCTTTCAAGGGGCAGTGCCTCACACGACACGAGCCGCGAGGAGCTATGAGGAGTCTGGTAAAGAGTATCACTTCATCAACAGGGAACTGTTTGAGAACATGGTTTACAACAACAGGTTTCTGGAATACGGGGAGTACAAAGATAATTTCTACGGCACTAGTCGTGATGCTGTGAAGGATGTTTTGAACAGTGGAAGGATCTGTGTCATCGACATCGAGCCTCATGCCATCCAGTCAGTGAGGACACATGAGCTTAAGGCCTACATTATCTATGTGAAGCCGCCCACCGCAGAACGCATGAAGGAGACCAGAAAGGATGCTCAGATCACCACCAATTACTATGATAACAGACCTTTCAAAGAGGAAGACTTCCAGGAGATGGAGGTGGCAGCCAGGAAGATGGAGTCTCACTACTGCCAGTTCTTTGACTCTGTGATGGTGAACGACGGGCTGCAAGACTCATGTGTTCAGCTACTGAGGGCTGTGAGGAGGGCTCAGGATGAGCCACAGTGGGTTCCTGCCAGCTGGATACGACCCACAGAGGAGTTTTGATgaggagaatagagggggaggagagtacATAAAAGGATAACAAACAGATGGAGGGCAGGGCATCGTAAAAGAGGGAATGGAGAACAACATGGATGAGGGAGGAGTGGCTGTAACCTTTGGCTGCTACTTTTGAAGATACCCTCTGCTCTCAAGTGGAATTTGTTTTGGATtgggtttattgttttgttttgtttagtgGTGAGTTTGAGAGACTCATACAGATACTGTCCTTGTGTCTTCTTGAATCTGTTGTTGAATAATTAGCATATTCAAGGCTATGATGGAGCTGGATTAAACCAAAAATCATGTCTGTTTTTCTCTAAAATTGTGTGCGTAGTTGGAGATCATGTATTGATGTGCTACACAGGCATGCTATGAGAGGTTGCAGGTTAATGTCATCTTTCGTTTACATTTAGAGCAAATAATTATCCATGCTGAATTTCTGTATTttcttaatgtttttattttatttaataaaaAGAATGTTAATGCCAAAGAA
>XM_036982937.1
tacttttcgtcagccaacaagatgaataggcctaacgaacagcaaaagcactagcctatgtcaatgtactatcccccatagtataGTTGAGGTTTGAAAGCGCGAATATCTTTCAAATATCCAACCTGAAACTGTCTTTACCTAGGTCATTCTTCGCGAAGTCGACTGCGGAAAATGACAAAATCGCGGCAAGTGAAGCCTCCGTATGGATAAGGCAAGTACAGCCTCCGTTAAACACCGTATGGTACAAGCTACAACAGCACCGACGGTCTTGTTAAGCTCAACGGTGCTTTGTTTCATGACTCAAATGTTGTGAAGATGCACTTGGGAAGAACGAAAGCTGAGATAATTACAATGAATGTTTTAGGACCAAAGACTGCAGGATATTTTGGATGATCTGTCCCCGACCGAAGTTCGCTACGTAGTAAAAGCACAGACCTGTTACCAGCGAATCCCCTGGGGACTCTCACTCTGCGGCAAAAATTGGTAAACTGTATTACACAGAGGACAAATCCTCCTCTGGAGCTAAGTATTAAGGGTTGAAGAAGCGAGTCAAAGGGACTGGAAGAAAAGAGACCACAGAGGTCTGGGTTGGGGTGAATTTCCAGCAGTCAGTGCTGGGTGATCCCCATGAGGCAGACTGTGGAAGCCGAGGTGGTGATGTCGTCCCCTAGACTGAGTGACCATGGGCTAAGGCAGATCCTGTCTGACGTGGTAGAGGAGGTGAAACATTCCATCAATAAGGAAATCAACGGGGCAGAGCTCCTATACAGCCTCCTCAATGCCCCCTGGCTCAAGTCCCTGCTCAAAGTGCATGAGTGTCTGCGGCAACACCAGAGAGAGCCTCCTGCTCCCTTCCTACCgtacacaacacagctcatcCAACAGATTCTGACTGACATGAGAACAGTTCGGAACACTTCTGCTGAGGCCAGGGAGCTTTACAGTCTCCTCAGGGGACCACACCTCCAGGCTCTGATATCAACCCATGATATGGTGGCCCAGAAGGATTATGAGCCTGTGCTGCCTCCTATCCCTGACAACCTCCCTGACGATGAGGAGGCCATGAGGATTGTCTGTCTGGTGAAGAACAAGCAGCAGCTGggAGCCACGATAAAGCGAAATGGGATAACAGGGGAGATCTTTGTGGCACGGGTGATCCATGGAGGACTGGCAGACCGCAGCGgtcTGCTACATGCAGGGGACAGGATCACAGAGGTGAATGGTTACTCCGTAAATGGCCTGGAGCCTGAGCAGGTCATTGAGAGACTGGCCCGGTCTCAAGGCACCCTCATGTTCAAAGTGGTTCCCATCACAGATAGACCAGTCAACAACCAGACGATACTGTATGTGCGTGCCATGGCAGACTACAGTCCCCAGCAGGACCCGGCCATCCCCTGCGCCGAGGCAGGTATGGACTTCAGGAAGGGAGACCTGCTGGAGATCGTGGACCAGTCAGACTCCCTCTGGTGGCAGGCCAAGAAACTACCCAGCACCTCGGCCTGTGCTGGCCTTATCCCCTCCACCAACCTGCTCAGGAGGAAACAGAAAGAGTTCTGGTGGTCTCAGCCCTACCAGCCGCACACCTGCATCAAACCCTTGAGCACTGTGAATGAAGAGGAAGACCTGATTGATGAAAAGTGTGTTGAAGCTGATGAGGAAGCTTTTGAATCTGAGGAGCTAAGAGAAGAGGAGGGTGAGTTCAGCACTAACATCGAGGGGATCTATCTAACTGGGTTCAGACGTAGCCTGCGTCTGTGTCGGCGCCAGTCCCTAAGCACAAGCTCCAGTCAGCAGTCCTTCTACACACGCAGCGGCTACAATGCCCTCAACAACCCATACGAAGAGGTGGTACGATACCAGCGCAACCCGCAGGACAAACACCGCCTGGTCGCCCTCGTGGGTCCCTCTGGCGTTGGAGTGAACGAACTTCGCAGACGGTTAATCAAAATCAACCCAGTGACCTTTCAAGGGGCAGTGCCTCACACGACACGAGCCGCGAGGAGCTATGAGGAGTCTGGTAAAGAGTATCACTTCATCAACAGGGAACTGTTTGAGAACATGGTTTACAACAACAGGTTTCTGGAATACGGGGAGTACAAAGATAATTTCTACGGCACTAGTCGTGATGCTGTGAAGGATGTTTTGAACAGTGGAAGGATCTGTGTCATCGACATCGAGCCTCATGCCATCCAGTCAGTGAGGACACATGAGCTTAAGGCCTACATTATCTATGTGAAGCCGCCCACCGCAGAACGCATGAAGGAGACCAGAAAGGATGCTCAGATCACCACCAATTACTATGATAACAGACCTTTCAAAGAGGAAGACTTCCAGGAGATGGAGGTGGCAGCCAGGAAGATGGAGTCTCACTACTGCCAGTTCTTTGACTCTGTGATGGTGAACGACGGGCTGCAAGACTCATGTGTTCAGCTACTGAGGGCTGTGAGGAGGGCTCAGGATGAGCCACAGTGGGTTCCTGCCAGCTGGATACGACCCACAGAGGAGTTTTGATgaggagaatagagggggaggagagtacATAAAAGGATAACAAACAGATGGAGGGCAGGGCATCGTAAAAGAGGGAATGGAGAACAACATGGATGAGGGAGGAGTGGCTGTAACCTTTGGCTGCTACTTTTGAAGATACCCTCTGCTCTCAAGTGGAATTTGTTTTGGATtgggtttattgttttgttttgtttagtgGTGAGTTTGAGAGACTCATACAGATACTGTCCTTGTGTCTTCTTGAATCTGTTGTTGAATAATTAGCATATTCAAGGCTATGATGGAGCTGGATTAAACCAAAAATCATGTCTGTTTTTCTCTAAAATTGTGTGCGTAGTTGGAGATCATGTATTGATGTGCTACACAGGCATGCTATGAGAGGTTGCAGGTTAATGTCATCTTTCGTTTACATTTAGAGCAAATAATTATCCATGCTGAATTTCTGTATTttcttaatgtttttattttatttaataaaaAGAATGTTAATGCCAAAGAA
>XM_036982938.1
tacttttcgtcagccaacaagatgaataggcctaacgaacagcaaaagcactagcctatgtcaatgtactatcccccatagtataGTTGAGGTTTGAAAGCGCGAATATCTTTCAAATATCCAACCTGAAACTGTCTTTACCTAGGTCATTCTTCGCGAAGTCGACTGCGGAAAATGACAAAATCGCGGCAAGTGAAGCCTCCGTATGGATAAGGCAAGTACAGCCTCCGTTAAACACCGTATGGTACAAGCTACAACAGCACCGACGGTCTTGTTAAGCTCAACGGTGCTTTGTTTCATGACTCAAATGTTGTGAAGATGCACTTGGGAAGAACGAAAGCTGAGATAATTACAATGAATGTTTTAGGACCAAAGACTGCAGGATATTTTGGATGATCTGTCCCCGACCGAAGTTCGCTACGTAGTAAAAGCACAGACCTGTTACCAGCGAATCCCCTGGGGACTCTCACTCTGCGGCAAAAATTGGTAAACTGTATTACACAGAGGACAAATCCTCCTCTGGAGCTAAGTATTAAGGGTTGAAGAAGCGAGTCAAAGGGACTGGAAGAAAAGAGACCACAGAGGTCTGGGTTGGGGTGAATTTCCAGCAGTCAGTGCTGGGTGATCCCCATGAGGCAGACTGTGGAAGCCGAGGTGGTGATGTCGTCCCCTAGACTGAGTGACCATGGGCTAAGGCAGATCCTGTCTGACGTGGTAGAGGAGGTGAAACATTCCATCAATAAGGAAATCAACGGGGCAGAGCTCCTATACAGCCTCCTCAATGCCCCCTGGCTCAAGTCCCTGCTCAAAGTGCATGAGTGTCTGCGGCAACACCAGAGAGAGCCTCCTGCTCCCTTCCTACCgtacacaacacagctcatcCAACAGATTCTGACTGACATGAGAACAGTTCGGAACACTTCTGCTGAGGCCAGGGAGCTTTACAGTCTCCTCAGGGGACCACACCTCCAGGCTCTGATATCAACCCATGATATGGTGGCCCAGAAGGATTATGAGCCTGTGCTGCCTCCTATCCCTGACAACCTCCCTGACGATGAGGAGGCCATGAGGATTGTCTGTCTGGTGAAGAACAAGCAGCAGCTGggAGCCACGATAAAGCGAAATGGGATAACAGGGGAGATCTTTGTGGCACGGGTGATCCATGGAGGACTGGCAGACCGCAGCGgtcTGCTACATGCAGGGGACAGGATCACAGAGGTGAATGGTTACTCCGTAAATGGCCTGGAGCCTGAGCAGGTCATTGAGAGACTGGCCCGGTCTCAAGGCACCCTCATGTTCAAAGTGGTTCCCATCACAGATAGACCAGTCAACAACCAGACGATACTGTATGTGCGTGCCATGGCAGACTACAGTCCCCAGCAGGACCCGGCCATCCCCTGCGCCGAGGCAGGTATGGACTTCAGGAAGGGAGACCTGCTGGAGATCGTGGACCAGTCAGACTCCCTCTGGTGGCAGGCCAAGAAACTACCCAGCACCTCGGCCTGTGCTGGCCTTATCCCCTCCACCAACCTGCTCAGGAGGAAACAGAAAGAGTTCTGGTGGTCTCAGCCCTACCAGCCGCACACCTGCATCAAACCCTTGAGCACTGTGAATGAAGAGGAAGACCTGATTGATGAAAAGTGTGTTGAAGCTGATGAGGAAGCTTTTGAATCTGAGGAGGGTGAGTTCAGCACTAACATCGAGGGGATCTATCTAACTGGGTTCAGACGTAGCCTGCGTCTGTGTCGGCGCCAGTCCCTAAGCACAAGCTCCAGTCAGCAGTCCTTCTACACACGCAGCGGCTACAATGCCCTCAACAACCCATACGAAGAGGTGGTACGATACCAGCGCAACCCGCAGGACAAACACCGCCTGGTCGCCCTCGTGGGTCCCTCTGGCGTTGGAGTGAACGAACTTCGCAGACGGTTAATCAAAATCAACCCAGTGACCTTTCAAGGGGCAGTGCCTCACACGACACGAGCCGCGAGGAGCTATGAGGAGTCTGGTAAAGAGTATCACTTCATCAACAGGGAACTGTTTGAGAACATGGTTTACAACAACAGGTTTCTGGAATACGGGGAGTACAAAGATAATTTCTACGGCACTAGTCGTGATGCTGTGAAGGATGTTTTGAACAGTGGAAGGATCTGTGTCATCGACATCGAGCCTCATGCCATCCAGTCAGTGAGGACACATGAGCTTAAGGCCTACATTATCTATGTGAAGCCGCCCACCGCAGAACGCATGAAGGAGACCAGAAAGGATGCTCAGATCACCACCAATTACTATGATAACAGACCTTTCAAAGAGGAAGACTTCCAGGAGATGGAGGTGGCAGCCAGGAAGATGGAGTCTCACTACTGCCAGTTCTTTGACTCTGTGATGGTGAACGACGGGCTGCAAGACTCATGTGTTCAGCTACTGAGGGCTGTGAGGAGGGCTCAGGATGAGCCACAGTGGGTTCCTGCCAGCTGGATACGACCCACAGAGGAGTTTTGATgaggagaatagagggggaggagagtacATAAAAGGATAACAAACAGATGGAGGGCAGGGCATCGTAAAAGAGGGAATGGAGAACAACATGGATGAGGGAGGAGTGGCTGTAACCTTTGGCTGCTACTTTTGAAGATACCCTCTGCTCTCAAGTGGAATTTGTTTTGGATtgggtttattgttttgttttgtttagtgGTGAGTTTGAGAGACTCATACAGATACTGTCCTTGTGTCTTCTTGAATCTGTTGTTGAATAATTAGCATATTCAAGGCTATGATGGAGCTGGATTAAACCAAAAATCATGTCTGTTTTTCTCTAAAATTGTGTGCGTAGTTGGAGATCATGTATTGATGTGCTACACAGGCATGCTATGAGAGGTTGCAGGTTAATGTCATCTTTCGTTTACATTTAGAGCAAATAATTATCCATGCTGAATTTCTGTATTttcttaatgtttttattttatttaataaaaAGAATGTTAATGCCAAAGAA

Function

NR:

description
MAGUK p55 subfamily member 4 isoform X2

GO: NA

KEGG:

id description
K21109 MPP4; MAGUK p55 subfamily member 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608787.2 False 3671 mRNA 0.47 20 21339692 21354616
XM_036982937.1 False 3013 mRNA 0.49 21 21339692 21354616
XM_036982938.1 True 2998 mRNA 0.49 20 21339692 21354616

Neighbor

gene id symbol gene type direction distance location
LOC110527488 LOC106575173 coding upstream 2260 21315006 ~ 21337432 (+)
sumo1 sumo1 coding upstream 90343 21246358 ~ 21249349 (+)
LOC110527484 LOC106574241 coding upstream 156348 21176983 ~ 21183344 (+)
LOC110527479 LOC106575163 coding upstream 294760 21033870 ~ 21044932 (+)
LOC110527473 LOC106575157 coding upstream 397967 20893808 ~ 20941725 (+)
LOC110527490 LOC106575177 coding downstream 520 21355136 ~ 21364322 (+)
LOC110527492 LOC106575178 coding downstream 14085 21368701 ~ 21374052 (+)
LOC110527491 LOC106574254 coding downstream 19586 21374202 ~ 21388754 (+)
LOC110528813 LOC106575179 coding downstream 49951 21404567 ~ 21433139 (+)
LOC110527493 LOC106574257 coding downstream 79296 21433912 ~ 21436335 (+)
G584830 NA non-coding upstream 71605 21267844 ~ 21268087 (+)
G584795 LOC106575172 non-coding upstream 85168 21251274 ~ 21254524 (+)
G584792 NA non-coding upstream 95519 21243974 ~ 21244173 (+)
G584714 NA non-coding upstream 202186 21132659 ~ 21137506 (+)
G584711 NA non-coding upstream 208464 21130910 ~ 21131228 (+)
G584808 NA non-coding downstream 34679 21389295 ~ 21392225 (+)
G584820 NA non-coding downstream 39267 21393883 ~ 21438876 (+)
G584881 LOC106575186 non-coding downstream 85734 21440350 ~ 21441601 (+)
G584919 NA non-coding downstream 176784 21531400 ~ 21531633 (+)
G584923 NA non-coding downstream 187508 21542124 ~ 21542360 (+)
G584643 NA other upstream 257077 21080828 ~ 21082615 (+)
G583605 NA other upstream 1099895 20238911 ~ 20239797 (+)
LOC110528807 LOC106574429 other upstream 1317965 20017855 ~ 20028775 (+)
G581976 LOC106581475 other upstream 2362693 18976678 ~ 18976999 (+)
G580997 NA other upstream 2846783 18492227 ~ 18492909 (+)
G585573 NA other downstream 598413 21953029 ~ 21953269 (+)
c7h10orf53 cssa17h10orf53 other downstream 1001967 22356500 ~ 22360232 (+)
LOC110527523 stat1-2 other downstream 1331873 22684527 ~ 22722539 (+)
G586685 NA other downstream 1655445 23010061 ~ 23015120 (+)
LOC110527540 LOC106533352 other downstream 2256736 23609520 ~ 23621369 (+)

Expression


Co-expression Network