LOC110527490 (LOC106575177)


Basic Information

Item Value
gene id LOC110527490
gene name LOC106575177
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 21355136 ~ 21364322 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608790.2
agGAAGTCCTTTTTGTGTTCTCAGTTAAAAATCACTGTCATGGCAAGGTCGGGTAAACAGCGTGGCAACCAACATGCAGACGTTACAAGTCCGAAACGTTTTAACagctaggtagctaactagctagttctTATCGGGGTTCTGTTTTAAAAGGGTATCGCGCAGAAATGGACACAGGAGGATTCCAGGCACAAAACACGCGACGGAGGGACCTCCCGCCTCTTCCACAGCGTGGACAGCGTGCCCTGCCCCCCATGTCAAGTCAAGATACAGGTGATGAGATGCCGGTCCCTAAAAGCAAGAGGAAAAAGTCAAAGAGTCAGGTGGATGGTGTTGAAAGCCCAGAGGACCCAGGGGTGGAGATGGCCCAGGTGGGGGGCCTGAGCAGTCGTAGGTCATCTGAGGTCATCCAGGCCTTGACCTCCGAGTCGCAGGAAGCTGCACCAcagagaaggaagaagaagaaaagggcaGCGACCGTAGACCTGGAGGATGACCAGGCTGACCTGGTGAACGGGGATGGACTGGTCCAGAACACAGCCGAGGCAGGGGAAGCAGTGACCAAAAAACCCAAGAGGAAGAAGAAGTCGAAAGTGTCCGAGACACAGTACGTCAACGAGCTTGATGTCGAGGACGATGACATCATCACAGACGCTCAGCCACCCATCCCCCAGCATTCCCTGTTCTCTGCTCCCCTGGGACAGAGCCAGCCTGTGGGGAAGGTGTTTGTAGAGAGGAGCAAGAGGTTTCAAGCGGCCGATCGGTCAGACAGACCGAAGCCCAGCGATCAGGTGGACAACTTCGTGGACATCCAGCAGATGTGGACCACCAAGGATGTGTCTGTTAGGGTACATGGTggcttcagGGGGATTGGGCTGTTCTGCCATGGCTTCCTAGCAGGCTATGCAGTGTGGAACATCATAGTGATCTATGCCCTGGCAGGAAAACATCTCACTACTCTGCCTAACCTACTGCAGCAGTACCACAGCCTGGCCTACCCTGCACAGTCTCTCTTCTACCTGCTACTGGCTATAAGCACTGTGTCAGCCTTTGACAGGGTGAATCTGGCCAAAGGCGCCATGGCTATGAGAGAGTTTGTCACCCTGGACCCAGTTGCTTTAGCCTCTTtctTGTACTTCTCAGctctggtcctctctctcagCCAGCAGATGACCAGTGACCGCATCAACCTGTACCCCAGTGCTAACGAGACCTTATGgcCTCCTGGGTCAGAGCAACAGATCCTGAACCCGTGGATCATAGTGAATCTGGTGGTGGCTGTGCTGGTGGGAATGGCCTGGATCTTCATCTCCGCCAGGCCTGAGATGGATTACACCGAAGGGTTCCTAATGGCTATGGAGATCGAGTCCTTGAGACCAGAGGAGAAATCAGAAATGTCTACTTGAGGAATATTTCAATTTTTGCTCGCACATCTTTTTTTTGTACCGTATTTTATCAGCCAACACAAAATGTACGTGTTTGTGGCAATAATCAGTTTATTTTTGTATGACCCGAATGTGTGCTTGTTTTGTCAAATGTATTGGTTACCATTGGAAATAATAAAAATGTTATCCCACTGA
>XM_021608789.2
gGAAGTCCTTTTTGTGTTCTCAGTTAAAAATCACTGTCATGGCAAGGTCGGGTAAACAGCGTGGCAACCAACATGCAGACGTTACAAGTCCGAAACGTTTTAACagctaggtagctaactagctagttctTATCGGGGTTCTGTTTTAAAAGGGTATCGCGCAGAAATGGACACAGGAGGATTCCAGGCACAAAACACGCGACGGAGGGACCTCCCGCCTCTTCCACAGCGTGGACAGCGTGCCCTGCCCCCCATGTCAAGTCAAGATACAGGTGATGAGATGCCGGTCCCTAAAAGCAAGAGGAAAAAGTCAAAGAGTCAGGTGGATGGTGTTGAAAGCCCAGAGGCAGACCCAGGGGTGGAGATGGCCCAGGTGGGGGGCCTGAGCAGTCGTAGGTCATCTGAGGTCATCCAGGCCTTGACCTCCGAGTCGCAGGAAGCTGCACCAcagagaaggaagaagaagaaaagggcaGCGACCGTAGACCTGGAGGATGACCAGGCTGACCTGGTGAACGGGGATGGACTGGTCCAGAACACAGCCGAGGCAGGGGAAGCAGTGACCAAAAAACCCAAGAGGAAGAAGAAGTCGAAAGTGTCCGAGACACAGTACGTCAACGAGCTTGATGTCGAGGACGATGACATCATCACAGACGCTCAGCCACCCATCCCCCAGCATTCCCTGTTCTCTGCTCCCCTGGGACAGAGCCAGCCTGTGGGGAAGGTGTTTGTAGAGAGGAGCAAGAGGTTTCAAGCGGCCGATCGGTCAGACAGACCGAAGCCCAGCGATCAGGTGGACAACTTCGTGGACATCCAGCAGATGTGGACCACCAAGGATGTGTCTGTTAGGGTACATGGTggcttcagGGGGATTGGGCTGTTCTGCCATGGCTTCCTAGCAGGCTATGCAGTGTGGAACATCATAGTGATCTATGCCCTGGCAGGAAAACATCTCACTACTCTGCCTAACCTACTGCAGCAGTACCACAGCCTGGCCTACCCTGCACAGTCTCTCTTCTACCTGCTACTGGCTATAAGCACTGTGTCAGCCTTTGACAGGGTGAATCTGGCCAAAGGCGCCATGGCTATGAGAGAGTTTGTCACCCTGGACCCAGTTGCTTTAGCCTCTTtctTGTACTTCTCAGctctggtcctctctctcagCCAGCAGATGACCAGTGACCGCATCAACCTGTACCCCAGTGCTAACGAGACCTTATGgcCTCCTGGGTCAGAGCAACAGATCCTGAACCCGTGGATCATAGTGAATCTGGTGGTGGCTGTGCTGGTGGGAATGGCCTGGATCTTCATCTCCGCCAGGCCTGAGATGGATTACACCGAAGGGTTCCTAATGGCTATGGAGATCGAGTCCTTGAGACCAGAGGAGAAATCAGAAATGTCTACTTGAGGAATATTTCAATTTTTGCTCGCACATCTTTTTTTTGTACCGTATTTTATCAGCCAACACAAAATGTACGTGTTTGTGGCAATAATCAGTTTATTTTTGTATGACCCGAATGTGTGCTTGTTTTGTCAAATGTATTGGTTACCATTGGAAATAATAAAAATGTTATCCCACTGA
>XM_036982946.1
AGTCCTTTTTGTGTTCTCAGTTAAAAATCACTGTCATGGCAAGGTCGGGTAAACAGCGTGGCAACCAACATGCAGACGTTACAAGTCCGAAACGTTTTAACagctaggtagctaactagctagttctTATCGGGGTTCTGTTTTAAAAGGGTATCGCGCAGAAATGGACACAGGAGGATTCCAGCGTGGACAGCGTGCCCTGCCCCCCATGTCAAGTCAAGATACAGGTGATGAGATGCCGGTCCCTAAAAGCAAGAGGAAAAAGTCAAAGAGTCAGGTGGATGGTGTTGAAAGCCCAGAGGACCCAGGGGTGGAGATGGCCCAGGTGGGGGGCCTGAGCAGTCGTAGGTCATCTGAGGTCATCCAGGCCTTGACCTCCGAGTCGCAGGAAGCTGCACCAcagagaaggaagaagaagaaaagggcaGCGACCGTAGACCTGGAGGATGACCAGGCTGACCTGGTGAACGGGGATGGACTGGTCCAGAACACAGCCGAGGCAGGGGAAGCAGTGACCAAAAAACCCAAGAGGAAGAAGAAGTCGAAAGTGTCCGAGACACAGTACGTCAACGAGCTTGATGTCGAGGACGATGACATCATCACAGACGCTCAGCCACCCATCCCCCAGCATTCCCTGTTCTCTGCTCCCCTGGGACAGAGCCAGCCTGTGGGGAAGGTGTTTGTAGAGAGGAGCAAGAGGTTTCAAGCGGCCGATCGGTCAGACAGACCGAAGCCCAGCGATCAGGTGGACAACTTCGTGGACATCCAGCAGATGTGGACCACCAAGGATGTGTCTGTTAGGGTACATGGTggcttcagGGGGATTGGGCTGTTCTGCCATGGCTTCCTAGCAGGCTATGCAGTGTGGAACATCATAGTGATCTATGCCCTGGCAGGAAAACATCTCACTACTCTGCCTAACCTACTGCAGCAGTACCACAGCCTGGCCTACCCTGCACAGTCTCTCTTCTACCTGCTACTGGCTATAAGCACTGTGTCAGCCTTTGACAGGGTGAATCTGGCCAAAGGCGCCATGGCTATGAGAGAGTTTGTCACCCTGGACCCAGTTGCTTTAGCCTCTTtctTGTACTTCTCAGctctggtcctctctctcagCCAGCAGATGACCAGTGACCGCATCAACCTGTACCCCAGTGCTAACGAGACCTTATGgcCTCCTGGGTCAGAGCAACAGATCCTGAACCCGTGGATCATAGTGAATCTGGTGGTGGCTGTGCTGGTGGGAATGGCCTGGATCTTCATCTCCGCCAGGCCTGAGATGGATTACACCGAAGGGTTCCTAATGGCTATGGAGATCGAGTCCTTGAGACCAGAGGAGAAATCAGAAATGTCTACTTGAGGAATATTTCAATTTTTGCTCGCACATCTTTTTTTTGTACCGTATTTTATCAGCCAACACAAAATGTACGTGTTTGTGGCAATAATCAGTTTATTTTTGTATGACCCGAATGTGTGCTTGTTTTGTCAAATGTATTGGTTACCATTGGAAATAATAAAAATGTTATCCCACTGA
>XM_021608791.2
GTCCTTTTTGTGTTCTCAGTTAAAAATCACTGTCATGGCAAGGTCGGGTAAACAGCGTGGCAACCAACATGCAGACGTTACAAGTCCGAAACGTTTTAACagctaggtagctaactagctagttctTATCGGGGTTCTGTTTTAAAAGGGTATCGCGCAGAAATGGACACAGGAGGATTCCAGCGTGGACAGCGTGCCCTGCCCCCCATGTCAAGTCAAGATACAGGTGATGAGATGCCGGTCCCTAAAAGCAAGAGGAAAAAGTCAAAGAGTCAGGTGGATGGTGTTGAAAGCCCAGAGGCAGACCCAGGGGTGGAGATGGCCCAGGTGGGGGGCCTGAGCAGTCGTAGGTCATCTGAGGTCATCCAGGCCTTGACCTCCGAGTCGCAGGAAGCTGCACCAcagagaaggaagaagaagaaaagggcaGCGACCGTAGACCTGGAGGATGACCAGGCTGACCTGGTGAACGGGGATGGACTGGTCCAGAACACAGCCGAGGCAGGGGAAGCAGTGACCAAAAAACCCAAGAGGAAGAAGAAGTCGAAAGTGTCCGAGACACAGTACGTCAACGAGCTTGATGTCGAGGACGATGACATCATCACAGACGCTCAGCCACCCATCCCCCAGCATTCCCTGTTCTCTGCTCCCCTGGGACAGAGCCAGCCTGTGGGGAAGGTGTTTGTAGAGAGGAGCAAGAGGTTTCAAGCGGCCGATCGGTCAGACAGACCGAAGCCCAGCGATCAGGTGGACAACTTCGTGGACATCCAGCAGATGTGGACCACCAAGGATGTGTCTGTTAGGGTACATGGTggcttcagGGGGATTGGGCTGTTCTGCCATGGCTTCCTAGCAGGCTATGCAGTGTGGAACATCATAGTGATCTATGCCCTGGCAGGAAAACATCTCACTACTCTGCCTAACCTACTGCAGCAGTACCACAGCCTGGCCTACCCTGCACAGTCTCTCTTCTACCTGCTACTGGCTATAAGCACTGTGTCAGCCTTTGACAGGGTGAATCTGGCCAAAGGCGCCATGGCTATGAGAGAGTTTGTCACCCTGGACCCAGTTGCTTTAGCCTCTTtctTGTACTTCTCAGctctggtcctctctctcagCCAGCAGATGACCAGTGACCGCATCAACCTGTACCCCAGTGCTAACGAGACCTTATGgcCTCCTGGGTCAGAGCAACAGATCCTGAACCCGTGGATCATAGTGAATCTGGTGGTGGCTGTGCTGGTGGGAATGGCCTGGATCTTCATCTCCGCCAGGCCTGAGATGGATTACACCGAAGGGTTCCTAATGGCTATGGAGATCGAGTCCTTGAGACCAGAGGAGAAATCAGAAATGTCTACTTGAGGAATATTTCAATTTTTGCTCGCACATCTTTTTTTTGTACCGTATTTTATCAGCCAACACAAAATGTACGTGTTTGTGGCAATAATCAGTTTATTTTTGTATGACCCGAATGTGTGCTTGTTTTGTCAAATGTATTGGTTACCATTGGAAATAATAAAAATGTTATCCCACTGA
>XM_036982945.1
TCTCAGTTAAAAATCACTGTCATGGCAAGGTCGGGTAAACAGCGTGGCAACCAACATGCAGACGTTACAAGTCCGAAACGTTTTAACagctaggtagctaactagctagttctTATCGGGGTTCTGTTTTAAAAGGGTATCGCGCAGAAATGGACACAGGAGGATTCCAGGCACAAAACACGCGACGGAGGGACCTCCCGCCTCTTCCACAGTACCTTGGCAGATGCCTACTGCAGATTTAGCCCAGGATTAGGCCGTGTCAGCAAGTCTGTGGCACAGGAATATCCCCAGAGCCCTTCCTAATTCTTGGATGTAATGGTGAGAAAACAACTCACGCGTGGACAGCGTGCCCTGCCCCCCATGTCAAGTCAAGATACAGGTGATGAGATGCCGGTCCCTAAAAGCAAGAGGAAAAAGTCAAAGAGTCAGGTGGATGGTGTTGAAAGCCCAGAGGACCCAGGGGTGGAGATGGCCCAGGTGGGGGGCCTGAGCAGTCGTAGGTCATCTGAGGTCATCCAGGCCTTGACCTCCGAGTCGCAGGAAGCTGCACCAcagagaaggaagaagaagaaaagggcaGCGACCGTAGACCTGGAGGATGACCAGGCTGACCTGGTGAACGGGGATGGACTGGTCCAGAACACAGCCGAGGCAGGGGAAGCAGTGACCAAAAAACCCAAGAGGAAGAAGAAGTCGAAAGTGTCCGAGACACAGTACGTCAACGAGCTTGATGTCGAGGACGATGACATCATCACAGACGCTCAGCCACCCATCCCCCAGCATTCCCTGTTCTCTGCTCCCCTGGGACAGAGCCAGCCTGTGGGGAAGGTGTTTGTAGAGAGGAGCAAGAGGTTTCAAGCGGCCGATCGGTCAGACAGACCGAAGCCCAGCGATCAGGTGGACAACTTCGTGGACATCCAGCAGATGTGGACCACCAAGGATGTGTCTGTTAGGGTACATGGTggcttcagGGGGATTGGGCTGTTCTGCCATGGCTTCCTAGCAGGCTATGCAGTGTGGAACATCATAGTGATCTATGCCCTGGCAGGAAAACATCTCACTACTCTGCCTAACCTACTGCAGCAGTACCACAGCCTGGCCTACCCTGCACAGTCTCTCTTCTACCTGCTACTGGCTATAAGCACTGTGTCAGCCTTTGACAGGGTGAATCTGGCCAAAGGCGCCATGGCTATGAGAGAGTTTGTCACCCTGGACCCAGTTGCTTTAGCCTCTTtctTGTACTTCTCAGctctggtcctctctctcagCCAGCAGATGACCAGTGACCGCATCAACCTGTACCCCAGTGCTAACGAGACCTTATGgcCTCCTGGGTCAGAGCAACAGATCCTGAACCCGTGGATCATAGTGAATCTGGTGGTGGCTGTGCTGGTGGGAATGGCCTGGATCTTCATCTCCGCCAGGCCTGAGATGGATTACACCGAAGGGTTCCTAATGGCTATGGAGATCGAGTCCTTGAGACCAGAGGAGAAATCAGAAATGTCTACTTGAGGAATATTTCAATTTTTGCTCGCACATCTTTTTTTTGTACCGTATTTTATCAGCCAACACAAAATGTACGTGTTTGTGGCAATAATCAGTTTATTTTTGTATGACCCGAATGTGTGCTTGTTTTGTCAAATGTATTGGTTACCATTGGAAATAATAAAAATGTTATCCCACTGA
>XM_036982944.1
TCAGTTAAAAATCACTGTCATGGCAAGGTCGGGTAAACAGCGTGGCAACCAACATGCAGACGTTACAAGTCCGAAACGTTTTAACagctaggtagctaactagctagttctTATCGGGGTTCTGTTTTAAAAGGGTATCGCGCAGAAATGGACACAGGAGGATTCCAGGCACAAAACACGCGACGGAGGGACCTCCCGCCTCTTCCACAGTACCTTGGCAGATGCCTACTGCAGATTTAGCCCAGGATTAGGCCGTGTCAGCAAGTCTGTGGCACAGGAATATCCCCAGAGCCCTTCCTAATTCTTGGATGTAATGGTGAGAAAACAACTCACGCGTGGACAGCGTGCCCTGCCCCCCATGTCAAGTCAAGATACAGGTGATGAGATGCCGGTCCCTAAAAGCAAGAGGAAAAAGTCAAAGAGTCAGGTGGATGGTGTTGAAAGCCCAGAGGCAGACCCAGGGGTGGAGATGGCCCAGGTGGGGGGCCTGAGCAGTCGTAGGTCATCTGAGGTCATCCAGGCCTTGACCTCCGAGTCGCAGGAAGCTGCACCAcagagaaggaagaagaagaaaagggcaGCGACCGTAGACCTGGAGGATGACCAGGCTGACCTGGTGAACGGGGATGGACTGGTCCAGAACACAGCCGAGGCAGGGGAAGCAGTGACCAAAAAACCCAAGAGGAAGAAGAAGTCGAAAGTGTCCGAGACACAGTACGTCAACGAGCTTGATGTCGAGGACGATGACATCATCACAGACGCTCAGCCACCCATCCCCCAGCATTCCCTGTTCTCTGCTCCCCTGGGACAGAGCCAGCCTGTGGGGAAGGTGTTTGTAGAGAGGAGCAAGAGGTTTCAAGCGGCCGATCGGTCAGACAGACCGAAGCCCAGCGATCAGGTGGACAACTTCGTGGACATCCAGCAGATGTGGACCACCAAGGATGTGTCTGTTAGGGTACATGGTggcttcagGGGGATTGGGCTGTTCTGCCATGGCTTCCTAGCAGGCTATGCAGTGTGGAACATCATAGTGATCTATGCCCTGGCAGGAAAACATCTCACTACTCTGCCTAACCTACTGCAGCAGTACCACAGCCTGGCCTACCCTGCACAGTCTCTCTTCTACCTGCTACTGGCTATAAGCACTGTGTCAGCCTTTGACAGGGTGAATCTGGCCAAAGGCGCCATGGCTATGAGAGAGTTTGTCACCCTGGACCCAGTTGCTTTAGCCTCTTtctTGTACTTCTCAGctctggtcctctctctcagCCAGCAGATGACCAGTGACCGCATCAACCTGTACCCCAGTGCTAACGAGACCTTATGgcCTCCTGGGTCAGAGCAACAGATCCTGAACCCGTGGATCATAGTGAATCTGGTGGTGGCTGTGCTGGTGGGAATGGCCTGGATCTTCATCTCCGCCAGGCCTGAGATGGATTACACCGAAGGGTTCCTAATGGCTATGGAGATCGAGTCCTTGAGACCAGAGGAGAAATCAGAAATGTCTACTTGAGGAATATTTCAATTTTTGCTCGCACATCTTTTTTTTGTACCGTATTTTATCAGCCAACACAAAATGTACGTGTTTGTGGCAATAATCAGTTTATTTTTGTATGACCCGAATGTGTGCTTGTTTTGTCAAATGTATTGGTTACCATTGGAAATAATAAAAATGTTATCCCACTGA

Function

NR:

description
transmembrane protein 237B-like isoform X4

GO: NA

KEGG:

id description
K22765 TMEM237; transmembrane protein 237

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608790.2 False 1580 mRNA 0.51 14 21355136 21364322
XM_021608789.2 False 1582 mRNA 0.51 14 21355137 21364322
XM_036982946.1 False 1534 mRNA 0.51 13 21355140 21364322
XM_021608791.2 False 1536 mRNA 0.51 13 21355141 21364322
XM_036982945.1 False 1686 mRNA 0.51 15 21355154 21364322
XM_036982944.1 True 1687 mRNA 0.51 15 21355156 21364322

Neighbor

gene id symbol gene type direction distance location
LOC110527489 LOC106575175 coding upstream 520 21339692 ~ 21354616 (+)
LOC110527488 LOC106575173 coding upstream 17704 21315006 ~ 21337432 (+)
sumo1 sumo1 coding upstream 105787 21246358 ~ 21249349 (+)
LOC110527484 LOC106574241 coding upstream 171792 21176983 ~ 21183344 (+)
LOC110527479 LOC106575163 coding upstream 310204 21033870 ~ 21044932 (+)
LOC110527492 LOC106575178 coding downstream 4379 21368701 ~ 21374052 (+)
LOC110527491 LOC106574254 coding downstream 9880 21374202 ~ 21388754 (+)
LOC110528813 LOC106575179 coding downstream 40245 21404567 ~ 21433139 (+)
LOC110527493 LOC106574257 coding downstream 69590 21433912 ~ 21436335 (+)
LOC110527495 LOC106574258 coding downstream 78781 21443103 ~ 21452116 (+)
G584830 NA non-coding upstream 87049 21267844 ~ 21268087 (+)
G584795 LOC106575172 non-coding upstream 100612 21251274 ~ 21254524 (+)
G584792 NA non-coding upstream 110963 21243974 ~ 21244173 (+)
G584714 NA non-coding upstream 217630 21132659 ~ 21137506 (+)
G584711 NA non-coding upstream 223908 21130910 ~ 21131228 (+)
G584808 NA non-coding downstream 24973 21389295 ~ 21392225 (+)
G584820 NA non-coding downstream 29561 21393883 ~ 21438876 (+)
G584881 LOC106575186 non-coding downstream 76028 21440350 ~ 21441601 (+)
G584919 NA non-coding downstream 167078 21531400 ~ 21531633 (+)
G584923 NA non-coding downstream 177802 21542124 ~ 21542360 (+)
G584643 NA other upstream 272521 21080828 ~ 21082615 (+)
G583605 NA other upstream 1115339 20238911 ~ 20239797 (+)
LOC110528807 LOC106574429 other upstream 1333409 20017855 ~ 20028775 (+)
G581976 LOC106581475 other upstream 2378137 18976678 ~ 18976999 (+)
G580997 NA other upstream 2862227 18492227 ~ 18492909 (+)
G585573 NA other downstream 588707 21953029 ~ 21953269 (+)
c7h10orf53 cssa17h10orf53 other downstream 992261 22356500 ~ 22360232 (+)
LOC110527523 stat1-2 other downstream 1322167 22684527 ~ 22722539 (+)
G586685 NA other downstream 1645739 23010061 ~ 23015120 (+)
LOC110527540 LOC106533352 other downstream 2247030 23609520 ~ 23621369 (+)

Expression


Co-expression Network