LOC110527492 (LOC106575178)


Basic Information

Item Value
gene id LOC110527492
gene name LOC106575178
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 21368701 ~ 21374052 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608804.2
TCTAGCCTCACTGACTGTGCAGGCTTTGCAGTAGAACACGGAGTGATGAGTCTACCGTAGACGTGGTCGCTATATTGTATGCATAGTATTTCTTTAGCTATCTATCTAAACGTTTTTTTGAGTAACATCAGCAAACATGCTGGACTTTGCGATATTTGCAGTGACTTTTGTCATCATTCTGGTTGGCGCAGTCCTCTATTTGTATCCATCATCAAGAAGCGCTTCTGGTATACCAGGTCTCAACCCTACAGAAGAGAAGGATGGAAATATACAAGACATAGTGAACCAAGGCAGTCTGCATGAGTTCCTGGCTTGTCTACATGGACAGTTTGGTCCTGTGGCATCCTTCTGGTTTGGAGGACGCCCTGTGGTCAGCTTGGGTTCAGTGGACCAGCTACGGCAGCACATCAACCCCAACAGGACTACGGACTCATTTGAGACAATGCTGAAGTCGTTGCTAGGGTACCAGTCAGGAATGGGTGGAGGGGCCACAGAGGCTGTAATGAGGAAGAAGTTGTATGAGAGTGCCGTCAACAACACCCTGAAGGAAAACTTTCCCCTGCTGCTGAAGCTGGTGGAGGAGTTAGTGGGGAAGTGGAAGTCTTTCCCTAAGGACCAGCACACACCCCTCTGTGCCCATCTGCTAGGATTGGCCATGAAGGCTGTCACTCAACTCGCTCTGGGTGACCGCTTCCGGAATGATGCTGAAGTCATCGGCTTCCGAAAGAACCACGAGGCAATCTGGTCGGAGATCGGAAAAGGCTATTTGGACGGTTCCATGGAGAAGAGCTCCATCAGAAAGGAACACTATGAGAGCGCACTGGCAGAAATGGAAACAGTGATGATGTCTGTGGCTAAAGACAGGAAAGGACAAAGGAGCCAGACAGCGTTTGTGGACGCTCTTCTCCAGTCCAACCTCACAGATAGACAGGTGATGGAGGACAGCATGGTGTTCACACTGGCAGGTTGTGTCATCACAGCTAATTTGTGCATCTGGGCAGTACACTTCCTGTCCACGTCAGAGGAAGTTCAGGAGAAGCTGCATCAGGAGCTGGAGGATGTTCTGGGCTCTGAGCCTGTTTCTCTGGATAATATCCCACAGCTCAGGTACTTCCAGCAGGTTTTGAACGAGACTGTGCGGACAGCCAAACTGACGCCCATCGCAGCCCAGCTCCAGGAAAATGAAGGGAAAGTCGATCAGCACATTATTCCTAAAGAGACACTGGTGATCTATGCCCTTGGGGTAGTCCTACAGGATGCAGACACCTGGAGCCGTCCCTACAAGTTTGACCCAGATCGATTCACAGAAGATTCAGCCAGGAAAAGCTTCTCTCTGCTTGGATTCTCAGGGAGCCAGGCCTGTCCTGAGCTGAGGTTTGCATACACAGTGGCCACTGTCGTCCTCAGCACTGTAGTGCGCCAACTGAAGCTGCATCAGGTAAAGGGACAGGTGGTAGAGGCCAGATCTGAGCTGGTGTCAACGCCTAAAGATGACACATGGATCACTGTGAGCAGAAGAAGCTAAACTAACAGTGGACATTTGTCTCAAACTCCATCTGTGGAAGAGGAACTGTGTTATTTGGGATGGTGCTTGTCAGTTAGCCTAGATTCTAGACCGAGTGGAACTGTTAAAATAACTTTAAACATGATGCCGCGCTTTGTAGGGCTATTTGTCAGTGAGCTCTTGAACATGGTTTTGATTAGCTCAAGTCATTGCCAATGGCGACTCGTCATTTGAGCTACCACCTGAAGTAGCTTTTTGTTCTGCCTATTTCAATATGAGGATCAGTACCTATCTTTTAAGTTCCATGACCATTGATGAATTGTCTTAAACCTTGCCTTAAACCAACATTCCAGCTGAACTGCCTTCCAAAGCACGTGGTCCCCACTCCCCCAGATATATGGCATTTTTGACAGTTCATTTTAAAAATAAAGTTTACACTACTCTTGTGTTAGGATAGGAATATAATATTTTGCACATTTGTTGCAGCCCCACTGTTGTGAGCATATCTCGCCACCTTTAAGACATCTTGGCCATTATTATCAACAAGTGCTCACTCTGTATCTGCAGGGTCTCTGGTTCAATCCCCAGCCCTGTTTCCCCTGTATCGCTACTTTAGCATTGgttgtttaaaataaaaaataatattattAACA

Function

NR:

description
cytochrome P450 20A1-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K07435 CYP20A; cytochrome P450 family 20 subfamily A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608804.2 True 2157 mRNA 0.47 13 21368701 21374052
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110527490 LOC106575177 coding upstream 4379 21355136 ~ 21364322 (+)
LOC110527489 LOC106575175 coding upstream 14085 21339692 ~ 21354616 (+)
LOC110527488 LOC106575173 coding upstream 31269 21315006 ~ 21337432 (+)
sumo1 sumo1 coding upstream 119352 21246358 ~ 21249349 (+)
LOC110527484 LOC106574241 coding upstream 185357 21176983 ~ 21183344 (+)
LOC110527491 LOC106574254 coding downstream 150 21374202 ~ 21388754 (+)
LOC110528813 LOC106575179 coding downstream 30515 21404567 ~ 21433139 (+)
LOC110527493 LOC106574257 coding downstream 59860 21433912 ~ 21436335 (+)
LOC110527495 LOC106574258 coding downstream 69051 21443103 ~ 21452116 (+)
LOC110527497 LOC106575187 coding downstream 80695 21454747 ~ 21496011 (+)
G584830 NA non-coding upstream 100614 21267844 ~ 21268087 (+)
G584795 LOC106575172 non-coding upstream 114177 21251274 ~ 21254524 (+)
G584792 NA non-coding upstream 124528 21243974 ~ 21244173 (+)
G584714 NA non-coding upstream 231195 21132659 ~ 21137506 (+)
G584711 NA non-coding upstream 237473 21130910 ~ 21131228 (+)
G584808 NA non-coding downstream 15243 21389295 ~ 21392225 (+)
G584820 NA non-coding downstream 19831 21393883 ~ 21438876 (+)
G584881 LOC106575186 non-coding downstream 66298 21440350 ~ 21441601 (+)
G584919 NA non-coding downstream 157348 21531400 ~ 21531633 (+)
G584923 NA non-coding downstream 168072 21542124 ~ 21542360 (+)
G584643 NA other upstream 286086 21080828 ~ 21082615 (+)
G583605 NA other upstream 1128904 20238911 ~ 20239797 (+)
LOC110528807 LOC106574429 other upstream 1346974 20017855 ~ 20028775 (+)
G581976 LOC106581475 other upstream 2391702 18976678 ~ 18976999 (+)
G580997 NA other upstream 2875792 18492227 ~ 18492909 (+)
G585573 NA other downstream 578977 21953029 ~ 21953269 (+)
c7h10orf53 cssa17h10orf53 other downstream 982531 22356500 ~ 22360232 (+)
LOC110527523 stat1-2 other downstream 1312437 22684527 ~ 22722539 (+)
G586685 NA other downstream 1636009 23010061 ~ 23015120 (+)
LOC110527540 LOC106533352 other downstream 2237300 23609520 ~ 23621369 (+)

Expression

LOC110527492(LOC106575178) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 15.
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LOC110527492(LOC106575178) Expression in each Bioproject

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LOC110527492(LOC106575178) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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Co-expression Network