LOC110527493 (LOC106574257)


Basic Information

Item Value
gene id LOC110527493
gene name LOC106574257
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 21433912 ~ 21436335 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608806.2
tgaggggttaaatgcagaagacacatttcagttgaaggaattccgttgtacaactgactagAGAGAAGCAGGTGCTTTGGGAAAGGGACCGGATCTGGGAAAGCGACAACGTATCCAAGCCTCTTCCTTAATATGAGGTGTGAGTCCGGAGTCTGAGGGTGAAAAAGAGGATCATTTAATAGATCGCTGTTCATTCAATACGGCAGCTCTCTGAGATGAGCTCTGTTGAGATGACGGGGCTTCAGTTCATCTGATCAGAAGATGTTGTTTGTCTGTAGGCAGACAAAGAGGACTGtcggtggattatcttggctgtCCGTTTAAAGTGAAGCTCTCTGTGTTGTGATATGGCATACCTGGTTCACACGGCTCACCCTCAGTTCGTCAGCCTGTGGTTGAGCGCCGTGGGTTGGGCCCTTACCGCGGTGACCCTTGGACTCATCCAGTGGAGGGTCTGGCAGGTGGCCGACTTGACCTTCATCACCTCAGGAGAGGCCTGGGTCGGTCTCTGGAGGGTGTGTTTCTATAGCCATACACTCGTGACCTCTGGGTTCAGGGTCATGTATTGTCAGAGTATGGCGCTGTCTGACTCCTTCACGCCCCCGGAGGTCGCCACGGCCCAGGTGCTCACTCTGCTAGGGCTGGTCGTGGGGTTCTGTGGAAACGCCGCCGCCGTCTACGCCCTCAGGAGCGTCTATTTCGGACTGGAGAAGCAGACGCCTATCCGCCGTGCGTTCGCAGTGGCTGGTACTCTGTGCTTGTTGTCCGCTGTGTGTTTTCTCATACCTCTCCTGTGGAACTTGAACTCGGTGGTGACCAATCAAACGATTGCGTTCCCTTCGAACTTCCACATGCCCCCTGCACCTGTGACCCAGAAACCAGGGGCAGGTATCGGGGTCGGGATCATAGGGTCGTTTATGATGATCGTCAGTGGAGTTATCTTCATCCTCTACAGGTTCCCTGTCAAGATGGGACCCAGAGTGGAGCCTTTTGGTCCAGAGGCAAGACACTTTGATGGGTCACCCCCTGGGTCTGTGGGACACAGTATGGATAATCTCAGTAACTCTCAGGCCAGGGACAATCCTGCCTTCCACTCTGATGAGCACTTGTGATTTTTGTCTGAGTTGGCCATATCCAATTTTGTATTTGAAGCATTGAAGCAGAAGTGATGTGACATAACACAGGAATAGCCGTTTGATGAAACTATGTGGTTAGTATGAGAACCCCTCCTCAGAACCTcagaacaagtgacatcaatcgccttcacctgggttcacctggtcagtctgtcatggaaagagcaggtgttcttaatgttttgtgtacactccattgattcttgaagaatataatttatgAATGCATCATGACCTGTCattccccatcagaaccccaaatataagcttgtttcactccattgtttgtaaacaatgtaattgtaaacaaacgcTGTATAGCGTCATTGTGGTTTACTATAATTTCGGTATCATGGATGGATggtcactttgttattgtttgatcTGCAGACCTTTCAAATATGTCATTACATTGATCATACATTGATTCGTAACATTCTTATACCTAATGGTTGTACTATAGTTGATAACAAAAAAGCACCTTTATTTTACAGTCACTGTGCGTTTGCGTTGTATTCAGTGAATACTGCTCCTGTAGAGTAGCAGTAATTGGgagcgcgcgcgcgcacacactctctcttttgaGGATGTACTTGCAACACACTTGTTTTTAGTCATTGCCTTGCAATCACTCCAAAGGGAGTTTGAAAACGGATTAcattaaatatgttttacatttaATTTGTATTGCTGGTGTCattgaatgtgtttgtttgtaaattatgcactgttgttgtttatttgaTTATATTGAAAATGTATTCTTGAACTTTTAAGGGCTCTTGACATCCAGGTAcaatattatacacacacacaattcagtcaGAAATAGTTGTGATAAATCATGTGATTAAAAGAGACAATGTTTTAA

Function

NR:

description
claudin-34-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608806.2 True 2007 mRNA 0.46 2 21433912 21436335

Neighbor

gene id symbol gene type direction distance location
LOC110528813 LOC106575179 coding upstream 773 21404567 ~ 21433139 (+)
LOC110527491 LOC106574254 coding upstream 45158 21374202 ~ 21388754 (+)
LOC110527492 LOC106575178 coding upstream 59860 21368701 ~ 21374052 (+)
LOC110527490 LOC106575177 coding upstream 69590 21355136 ~ 21364322 (+)
LOC110527489 LOC106575175 coding upstream 79296 21339692 ~ 21354616 (+)
LOC110527495 LOC106574258 coding downstream 6768 21443103 ~ 21452116 (+)
LOC110527497 LOC106575187 coding downstream 18412 21454747 ~ 21496011 (+)
LOC110527501 ralbb coding downstream 253001 21689336 ~ 21695194 (+)
LOC110527502 LOC106575193 coding downstream 301414 21737749 ~ 21744000 (+)
LOC100136615 LOC100136615 coding downstream 313005 21749340 ~ 21799872 (+)
G584808 NA non-coding upstream 41687 21389295 ~ 21392225 (+)
G584830 NA non-coding upstream 165825 21267844 ~ 21268087 (+)
G584795 LOC106575172 non-coding upstream 179388 21251274 ~ 21254524 (+)
G584792 NA non-coding upstream 189739 21243974 ~ 21244173 (+)
G584714 NA non-coding upstream 296406 21132659 ~ 21137506 (+)
G584881 LOC106575186 non-coding downstream 4015 21440350 ~ 21441601 (+)
G584919 NA non-coding downstream 95065 21531400 ~ 21531633 (+)
G584923 NA non-coding downstream 105789 21542124 ~ 21542360 (+)
G584959 NA non-coding downstream 159111 21595446 ~ 21595685 (+)
G584960 NA non-coding downstream 159889 21596224 ~ 21596434 (+)
G584643 NA other upstream 351297 21080828 ~ 21082615 (+)
G583605 NA other upstream 1194115 20238911 ~ 20239797 (+)
LOC110528807 LOC106574429 other upstream 1412185 20017855 ~ 20028775 (+)
G581976 LOC106581475 other upstream 2456913 18976678 ~ 18976999 (+)
G580997 NA other upstream 2941003 18492227 ~ 18492909 (+)
G585573 NA other downstream 516694 21953029 ~ 21953269 (+)
c7h10orf53 cssa17h10orf53 other downstream 920248 22356500 ~ 22360232 (+)
LOC110527523 stat1-2 other downstream 1250154 22684527 ~ 22722539 (+)
G586685 NA other downstream 1573726 23010061 ~ 23015120 (+)
LOC110527540 LOC106533352 other downstream 2175017 23609520 ~ 23621369 (+)

Expression


Co-expression Network