LOC118965268


Basic Information

Item Value
gene id LOC118965268
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 21447707 ~ 21448803 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052548.1
TGAGAAGTGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAGGTGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAAGTGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAAGTGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAGGTGATCtgaagacaacacagaggacataaaACAACACGGTTGAGAGGTGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAGGTGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAGGTGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAGGTGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAGGTGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAGGTGATCTGAAGACAGAGGACATAAAACAACATGGTTGAGAGGTGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAGGTGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAGGTGATCtgaa
>XR_005052550.1
TGAGAAGTGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAGGTGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAAGTGATCTgaacacaacacagaggacataaaACAACATGGTTGAGAGGTGATCtgaagacaacacagaggacataaaACAACACGGTTGAGAGGTGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAGGTGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAGGTGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAGGTGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAGGTGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAGGTGATCTGAAGACAGAGGACATAAAACAACATGGTTGAGAGGTGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAGGTGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAGGTGATCtgaa
>XR_005052547.1
ACACGGTTGAGAAGTGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAGGTGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAAGTGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAGGTGATCtgaagacaacacagaggacataaaACAACACGGTTGAGAGGTGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAGGTGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAGGTGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAGGTGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAGGTGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAGGTGATCTGAAGACAGAGGACATAAAACAACATGGTTGAGAGGTGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAGGTGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAGGTGATCtgaa
>XR_005052549.1
aggacataaaACAACATGGTTGAGAGGAGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAAGTGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAAGTGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAGGTGATCtgaagacaacacagaggacataaaACAACACGGTTGAGAGGTGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAGGTGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAGGTGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAGGTGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAGGTGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAGGTGATCTGAAGACAGAGGACATAAAACAACATGGTTGAGAGGTGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAGGTGATCtgaagacaacacagaggacataaaACAACATGGTTGAGAGGTGATCtgaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052548.1 False 609 mRNA 0.41 3 21447707 21448645
XR_005052550.1 False 563 mRNA 0.41 3 21447707 21448645
XR_005052547.1 False 570 mRNA 0.41 3 21447707 21448652
XR_005052549.1 True 583 mRNA 0.41 3 21447707 21448803

Neighbor

gene id symbol gene type direction distance location
LOC110527496 LOC106575186 coding downstream 6010 21439522 ~ 21441697 (-)
LOC110527494 LOC106575184 coding downstream 43780 21389287 ~ 21403927 (-)
cdk15 LOC106575174 coding downstream 132586 21287830 ~ 21315121 (-)
LOC110527486 LOC106575172 coding downstream 193041 21251269 ~ 21254666 (-)
LOC110527482 LOC106575171 coding downstream 204516 21224552 ~ 21243191 (-)
LOC118965423 NA coding upstream 10097 21458900 ~ 21459025 (-)
LOC110527499 LOC106575189 coding upstream 65029 21513832 ~ 21583054 (-)
LOC110527500 LOC106575190 coding upstream 225160 21673963 ~ 21684695 (-)
LOC110528814 LOC106575192 coding upstream 249014 21697817 ~ 21736923 (-)
LOC118965269 pnpla4 coding upstream 380361 21829164 ~ 21831559 (-)
G585211 NA non-coding downstream 95133 21352131 ~ 21352574 (-)
G585180 NA non-coding downstream 168229 21279242 ~ 21279478 (-)
G585172 NA non-coding downstream 179393 21268101 ~ 21268314 (-)
G585167 NA non-coding downstream 187558 21259847 ~ 21260149 (-)
G585162 NA non-coding downstream 201773 21245591 ~ 21245934 (-)
G585254 LOC106574260 non-coding upstream 39199 21488002 ~ 21488499 (-)
G585306 NA non-coding upstream 86201 21535004 ~ 21535506 (-)
G585317 NA non-coding upstream 103692 21552495 ~ 21552708 (-)
G585332 NA non-coding upstream 122192 21570995 ~ 21571310 (-)
G585359 NA non-coding upstream 172332 21621135 ~ 21621932 (-)
G585240 LOC106575179 other downstream 23122 21421454 ~ 21424585 (-)
LOC110527470 LOC103366558 other downstream 608371 20838415 ~ 20839399 (-)
otos2 LOC106575250 other downstream 669642 20772867 ~ 20778065 (-)
G583661 NA other downstream 1197722 20215649 ~ 20249985 (-)
G581174 LOC101077481 other downstream 3212669 18217158 ~ 18235038 (-)
LOC110527506 LOC106575199 other upstream 644009 22089741 ~ 22163995 (-)
G586414 LOC106574278 other upstream 1014405 22463208 ~ 22470518 (-)
LOC110527522 LOC106575212 other upstream 1161358 22609884 ~ 22620248 (-)
LOC110527529 ngl1 other upstream 1359850 22807676 ~ 22812906 (-)

Expression


Co-expression Network