LOC110527500 (LOC106575190)



Basic Information


Item Value
gene id LOC110527500
gene name LOC106575190
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 21673963 ~ 21684695 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021608812.2
TCGACCTAGCAAGAGAAAGGTTCGTCCGATCATCAGACCTCTTTATGCTCAAGTATACCAGGGCAATTTCATATCGGGAATACAAATCCAATTAAGATGCATTTTAATAAGGATACACAGGAACAAAAACTGAAGGAATAAGTCCAAAGCAAATGACAAACTGGATGCTACAATATGCGATAAGTTATTATTTGACCGACCCTTCAGCTTTTTCCATCTATGGAATATCCTGACTTGAGTTTATCAACCAATGGGTGGTTTTCTATTCGTTTAGTTTGTCCTCTTCTATTCGTTTCTAAATGATGGTTATTGTGGATTGCAGTTCAATTAAACCATGGCATGATACGTCAGGCATTGAACTGAAACTCAATTGACGGATAATGGTAGCCTACTGGTTTTTAAATTGTGTTACCTTGAAAGGGTGAAGCAAAGGCATTGAGACAAGCAGAACGGACTTGACTCCCAATGTGCCCCTGAAGTGAAGTCAACTGAGTGACAGACATCGGGAATGAACACAGACACGAAATAAGGGGAATATTTCAAGTTACGGTGAAAGGAATATTTAATTCCATCAAAACGCGCCTGAATTGAGTGAAATATTTATTATTGCATGGACTCCTTGCAAATGTATACGGACTAACGGGATTCTACAACTTTATATTTATTTTCATTCgaaattaagaaaatattttcttaaaaacGCCAAGTGAATAGCCTACTTTTGACAGCAATATTGTGCATACCTTTTTATAGTAGAAAACGAATTATAGGCTTATTGCACTTTAAATATCAcgacttttttttcttcataaagAAAATGATTAACTGTATAATCAAAGTGGCATTATTTGTTGCTTGTGTGTTGACTGTCCGCTGCAAAGAAGCGGCGCCCGGATCCTTGAGACCTTTGCCGGGAACGGAGACGCAAACCGTAGCTCAGGAAACTTGCACTTCGTGTGGCATCGGTCAGCCCGAGGAATCGGGACGGGTGGACATTGACTTTCTGGAGGCGGTGAAAAGGCATATCTTGAGCAGGTTACAGATGAGGGTAAGACCCAACATCACCCATCCTATCCCGAAGGCGGCGATGGTGACTGCGCTTCGGAAGCTCCACGCGGGTAAAGTCCGCGAGGATGGCAGAGTAGAAATCCCGAATCTGGATGGACACGCGACCAGCAATGCCAATGACGTGCTGGAGGAAAGCGCGGAGATAATCAGTTTCGCAGAGACAGATGAGCTGGTATCATCGAAATCCAGCCTGTTCTTCCTGATCTCTAACGAGGGAAACCAGCACCTGTATGTGACCCAGGCCACCCTCTGGCTGTACTTAAGGCTGCTTCCTAACACCCTGGACAAGGGCCAGCGGAGGAAGGTCACAGTCAAGGTGTACTACCAGGAGCCTGGCCTGGGCAGCAAGTGGAACCTGGTGGAAAAGCGTGTCGAGCTGAAGAGGAGCGGTTGGCACACCTTCCCCCTGACCAACGCTATCCAGATGGTGTTCGAGAAGGGCGGCCGGCGGCAGAACCTGGACGTGCGCTGTGAGGGCTGCGAGGACCTGGCGGTCTTCCCGATCCTCGTGAACCAGAACGACGAGTCCCACAGGCCGTTTCTAGTCGTACAGGCCCGGCAAGCGGACAACAAGCACCGCATCAGGAAGAGGGGGCTGGAGTGTGACGGGAGCAGTAGCCTGTGCTGCAGGCAGCAGTTCTATATAGACTTCCGCCTCATCGGCTGGAACGACTGGATCATCGCGCCGTCGGGGTACTTTGGGAACTACTGCGAGGGTAACTGTCCAGCGTACATGGCGGGGGTGCCAGGGTCGGCGTCGTCCTTCCACACTGCAGTGGTCAATCAGTATCGGATGAGGGGCATGAGCCCCGGCTCCATGAACTCCTGTTGCATCCCCACCAAGCTCAGCACCATGTCAATGCTCTACTTCGACGATGAATACAACATCGTCAAGAGAGACGTACCCAATATGATCGTGGAGGAGTGTGGATGCGCTTGAGTTGAGACTGCATGTGCTTCAAGTGGACTTTTAAGAACATGTGTAAACAAGAAAAGGATATTCCAAAATGAATTATAGAAATCAAAGTGATATTTATGGACATAAGGcatacgcacatgcacacacaacttAATTCATTTACGCATATCCTACACACTCATTCTCACATATGCCTGAACAAACActtgtatatatatttatgtctGTTAATAATATTCTCTGGTCAAAGCCTTTTTTCTTTTGCCAACATGTGAACATATGCTTCTATCCCAATTCATGTAGGTGTCATTATCAGAGGGATTGGAACTAGCTGGTACTTGTCGCATTATATATATTTCCAAGATTGCCATTTCTATTCTGAAAATGGAGAGTTCTATTTTCGATACTCTGACGAAGGTGGGAAAGAGCCTGAGATTATGAAGGAGGTGCACTTGCTGATAGACGATTCCCAACCCCGCCTCTTTCAAGAAAGTATGACTGCAAAACGTAGAGTGAAAGCACTGACAACTCACCTCTTATACAACTTCAGCACTTCTAACAAGAAATACATCTTGTTGATGTGTCACAAGATACCATTTTTATATAAAACCGTTTTCATTTTACGGGCCAGCGTCCGGAAATCAAAATGGCTTCCGTGTCAGAAGAGTGAGTGGAACATAAAAATACATTCCAACACACTGAATGCTGAAGCTGTCATCAAAACCTGGGAGTTTAGGCGGTGACGTGAAACAGTGACAATAGGGAAGAAACACTGACCTTCTGTTACTTCCTTCTGAATCCTTCCTTTCTTTTGTTCACACTTTTAACGGGAAGAGTTTAATTTCTTCAAGCAGCTGTAGCACAACCAGTTTCCACTCTCATTTCAGTCGGGAAATCAAAAGCGAAAGAGTTGCCATGTTGTTTGGTTTAAAGTCCTGGTGCAGCATAGCACTTCCTAATGCACATTAAATAGCACTTGCCGATTGAAATGCCTTTAAAGAGTACAATGTGGTACACCGACACTTGCTCACAATCCTTTTAAATATAAGTGCCGCATGAGCTATGCAATGTATAGTATTGACCCACAGACACCAGACAAACTGAAATTTTTGTTGCAGTTATTAACTATTACCAGTACTTGAAATGTAATCTTTCGCTTCTTCTTCAAAGTGAATGATAGTTACAATATTTGCACTGAAAAGTTGCGTGATTAgttaaaaaagaaagaaactGCCATtggaaaaaaagttatttttataGAAAGCAAATTGAGTTCTGTTCAAATGTATCATACCTAATCATGGAACCAAAGAGGCCAAGATTTTTTTTTGCTATTATAAGAGGCCATGGTATTATTTTGTAAAATACTTTGTGACCAGTTAAGAGGCCTAAACACTGCATCAGGATACAATATTATGGATTCCATTTTCAGTTCAACGTCTTCTTTTCTATTTTGTATTGACAAATATTTTTTCATCGACTTAAATACTCTTCGGTTTTCTAGTTCAGTTCTTGTTCCAGAATCATTTAGAAAAAACACGTCATCTCTGTACAGCTGATGTAAGATATAAATAtgattttaaaatattttgttcTTTGTAATTGTTGAAAAATAAAATGTCTTATTCT

Function


NR:

description
inhibin beta B chain-like

GO: NA

KEGG:

id description
K22687 INHBB; inhibin beta B chain

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021608812.2 True 3616 mRNA 0.43 2 21673963 21684695

Neighbor


gene id symbol gene type direction distance location
LOC110527499 LOC106575189 coding downstream 90909 21513832 ~ 21583054 (-)
LOC118965423 NA coding downstream 214938 21458900 ~ 21459025 (-)
LOC118965268 NA coding downstream 225160 21447707 ~ 21448803 (-)
LOC110527496 LOC106575186 coding downstream 232266 21439522 ~ 21441697 (-)
LOC110527494 LOC106575184 coding downstream 270036 21389287 ~ 21403927 (-)
LOC110528814 LOC106575192 coding upstream 13122 21697817 ~ 21736923 (-)
LOC118965269 pnpla4 coding upstream 144469 21829164 ~ 21831559 (-)
LOC110527506 LOC106575199 coding upstream 405046 22089741 ~ 22163995 (-)
pudp hdd1a coding upstream 528928 22213623 ~ 22230742 (-)
LOC110512351 LOC106575201 coding upstream 677466 22362161 ~ 22368437 (-)
G585359 NA non-coding downstream 52031 21621135 ~ 21621932 (-)
G585332 NA non-coding downstream 102653 21570995 ~ 21571310 (-)
G585317 NA non-coding downstream 121255 21552495 ~ 21552708 (-)
G585306 NA non-coding downstream 138457 21535004 ~ 21535506 (-)
G585251 NA non-coding downstream 178233 21443883 ~ 21495730 (-)
G585367 ralbb non-coding upstream 4625 21689320 ~ 21696570 (-)
G585421 NA non-coding upstream 55219 21739914 ~ 21753114 (-)
G585425 NA non-coding upstream 62987 21747682 ~ 21799873 (-)
G585528 NA non-coding upstream 229759 21914454 ~ 21914657 (-)
G585557 NA non-coding upstream 256903 21941598 ~ 21941915 (-)
G585240 LOC106575179 other downstream 249378 21421454 ~ 21424585 (-)
LOC110527470 LOC103366558 other downstream 834627 20838415 ~ 20839399 (-)
otos2 LOC106575250 other downstream 895898 20772867 ~ 20778065 (-)
G583661 NA other downstream 1423978 20215649 ~ 20249985 (-)
G586414 LOC106574278 other upstream 778513 22463208 ~ 22470518 (-)
LOC110527522 LOC106575212 other upstream 925466 22609884 ~ 22620248 (-)
LOC110527529 ngl1 other upstream 1123958 22807676 ~ 22812906 (-)
G586878 NA other upstream 1399795 23084490 ~ 23087137 (-)

Expression



Co-expression Network