LOC110527501 (ralbb)


Basic Information

Item Value
gene id LOC110527501
gene name ralbb
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 21689336 ~ 21695194 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608813.2
GTCACATCCGGTTCATATAATCGTTATCACACGACGTCCGGGAGTGGTCAAAATATCCGCATTTGCGGCTGGTAAGTGGAACTTGCCCTCTACTTTAGCTTTCCCATGGTGTATACCGGATAACAGCAAAGAAAGACACCAAACACATTACGAGGAAGTTCTGGTGTTGGTGGAGGCAGTTTCCATTAGTGTAGTAGCAGTGGACAGTGTCCAAATCCAAAGATGGCTACTGGAAAGAGTAAGAACCAGAGCTCTCTGGTGCTGCACAAGGTGATCATGGTGGGAAGTGGAGGTGTTGGGAAGTCAGCCCTCACTCTGCAGTTCATGTATGACGAGTTTGTGGAGGATTATGAGCCCACCAAGGCAGACAGCTACAGGAAGAAGGTGGTGCTGGATGGAGAGGAGGTCCAGATCGACATCCTGGACACAGCTGGACAGGAGGACTATGCAGCCATCAGAGACAACTACTTCAGGAGCGGAGAGGGCTTCCTGCTAGTCTTCTCCATCACCGAACACGAGTCGTTCACTGCCACCTCAGAGTTCAGGGAGCAGATTATGCGGGTGAAAGCAGAGAACGATACCATCCCTCTGTTGGTGGTGGGGAACAAGTCGGATCTGGAGGACCGCAGGCAGGTGTCGTTGGACGAGGTCCGGGCCAAGGCAGAGGAGTGGGGGGTGCAGTACGTGGAGACCTCAGCCAAGACACGAGCCAACGTCGACAAGGTGTTCTTTGATCTTATGAGGGAGGTGCGAAAAAAGAAAATGTCAGAGAGCAAGGATAAGGGTGGAAAAGAAGGCAAGATCAAGAAGGCTTTCAAATGTTGTCTGCTTTGATCTAGACCCGACCTTTCAGTCAGACACGCAGAGCCAAACCAGACTAGAGCCTCCGCAGCACAGTGGCATTAGACAGGGACATGTTCATTAGGACATACTGTAGCAAAATGTTTCAAAACCTTTCTTATTGGACAATATATTACATCTCCCTTTGGAGCATTTTCTTCAATTTCTTGCCTACTGAACACAAATCAGATCTACAGATCCTTCCCACTGAACTGAGCCTTCTGCCATTTTAACACACATCAAATCCATACACAGTACCTCTCACATTGTGGCAGTCAGAGGGGTGGCCTAACCTATGTTAGTTATGCAAACCATCCTTTGTGCCACTGTTGGGGACGGGTCCAGCGGGGACTGTTTAGATGAAGTGCCTCAACATTGATCGTGAATATATAGGTTATGATCACAGACAATCACTCACTCGCACACTACTTAAATATGGCCTTGGTTTGATGCTCACTTGTAGGAGTAGGTAGCCTCATCACCAAGAGAAATTGGCTATGCTGTTTGATGTCTTACTGTTTGCACTGCAATCAATTTTATAttcctactaccactactacaccactttttaaaatttatttatgGTCCACCGCATGAAAATCAGTCAGATAATTAAGTCACCTTATTCATAATCCAACATATTGTCCACATGTACAATCCAACATGTACTATATCCACATCGTGTATAtaataccggtcaaaagtttgaacactcctactcattcaaggttttttattttatttgactattttctacattgtagaatattagtgaagacatcaaaactatgaaatgacacacatggaatcatctagtgctgag
>XM_036982990.1
AAATATCCGCATTTGCGGCTGGAAGTTCTGGTGTTGGTGGAGGCAGTTTCCATTAGTGTAGTAGCAGTGGACAGTGTCCAAATCCAAAGATGGCTACTGGAAAGAGTAAGAACCAGAGCTCTCTGGTGCTGCACAAGGTGATCATGGTGGGAAGTGGAGGTGTTGGGAAGTCAGCCCTCACTCTGCAGTTCATGTATGACGAGTTTGTGGAGGATTATGAGCCCACCAAGGCAGACAGCTACAGGAAGAAGGTGGTGCTGGATGGAGAGGAGGTCCAGATCGACATCCTGGACACAGCTGGACAGGAGGACTATGCAGCCATCAGAGACAACTACTTCAGGAGCGGAGAGGGCTTCCTGCTAGTCTTCTCCATCACCGAACACGAGTCGTTCACTGCCACCTCAGAGTTCAGGGAGCAGATTATGCGGGTGAAAGCAGAGAACGATACCATCCCTCTGTTGGTGGTGGGGAACAAGTCGGATCTGGAGGACCGCAGGCAGGTGTCGTTGGACGAGGTCCGGGCCAAGGCAGAGGAGTGGGGGGTGCAGTACGTGGAGACCTCAGCCAAGACACGAGCCAACGTCGACAAGGTGTTCTTTGATCTTATGAGGGAGGTGCGAAAAAAGAAAATGTCAGAGAGCAAGGATAAGGGTGGAAAAGAAGGCAAGATCAAGAAGGCTTTCAAATGTTGTCTGCTTTGATCTAGACCCGACCTTTCAGTCAGACACGCAGAGCCAAACCAGACTAGAGCCTCCGCAGCACAGTGGCATTAGACAGGGACATGTTCATTAGGACATACTGTAGCAAAATGTTTCAAAACCTTTCTTATTGGACAATATATTACATCTCCCTTTGGAGCATTTTCTTCAATTTCTTGCCTACTGAACACAAATCAGATCTACAGATCCTTCCCACTGAACTGAGCCTTCTGCCATTTTAACACACATCAAATCCATACACAGTACCTCTCACATTGTGGCAGTCAGAGGGGTGGCCTAACCTATGTTAGTTATGCAAACCATCCTTTGTGCCACTGTTGGGGACGGGTCCAGCGGGGACTGTTTAGATGAAGTGCCTCAACATTGATCGTGAATATATAGGTTATGATCACAGACAATCACTCACTCGCACACTACTTAAATATGGCCTTGGTTTGATGCTCACTTGTAGGAGTAGGTAGCCTCATCACCAAGAGAAATTGGCTATGCTGTTTGATGTCTTACTGTTTGCACTGCAATCAATTTTATAttcctactaccactactacaccactttttaaaatttatttatgGTCCACCGCATGAAAATCAGTCAGATAATTAAGTCACCTTATTCATAATCCAACATATTGTCCACATGTACAATCCAACATGTACTATATCCACATCGTGTATAtaataccggtcaaaagtttgaacactcctactcattcaaggttttttattttatttgactattttctacattgtagaatattagtgaagacatcaaaactatgaaatgacacacatggaatcatctagtgctgag

Function

symbol description
ralbb Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Acts upstream of or within angiogenesis. Predicted to be located in membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in pancreatic adenocarcinoma. Orthologous to human RALB (RAS like proto-oncogene B).

NR:

description
ras-related protein ralB-B-like

GO:

id name namespace
GO:0007265 Ras protein signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005886 plasma membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07835 RALB; Ras-related protein Ral-B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608813.2 False 1663 mRNA 0.45 5 21689336 21695194
XM_036982990.1 True 1530 mRNA 0.45 5 21689386 21695194

Neighbor

gene id symbol gene type direction distance location
LOC110527497 LOC106575187 coding upstream 193325 21454747 ~ 21496011 (+)
LOC110527495 LOC106574258 coding upstream 237220 21443103 ~ 21452116 (+)
LOC110527493 LOC106574257 coding upstream 253001 21433912 ~ 21436335 (+)
LOC110528813 LOC106575179 coding upstream 256197 21404567 ~ 21433139 (+)
LOC110527491 LOC106574254 coding upstream 300582 21374202 ~ 21388754 (+)
LOC110527502 LOC106575193 coding downstream 42555 21737749 ~ 21744000 (+)
LOC100136615 LOC100136615 coding downstream 54146 21749340 ~ 21799872 (+)
LOC110527503 LOC106575196 coding downstream 66934 21762128 ~ 21790179 (+)
sts sts coding downstream 117793 21812987 ~ 21826025 (+)
LOC110527508 LOC106574269 coding downstream 595321 22290515 ~ 22312038 (+)
G584969 NA non-coding upstream 74734 21614296 ~ 21614602 (+)
G584962 NA non-coding upstream 87172 21601956 ~ 21602164 (+)
G584960 NA non-coding upstream 92902 21596224 ~ 21596434 (+)
G584959 NA non-coding upstream 93651 21595446 ~ 21595685 (+)
G584923 NA non-coding upstream 146976 21542124 ~ 21542360 (+)
G585059 NA non-coding downstream 107413 21802607 ~ 21802851 (+)
G585063 NA non-coding downstream 110695 21805889 ~ 21806302 (+)
G585102 NA non-coding downstream 188683 21883877 ~ 21884502 (+)
G585527 NA non-coding downstream 216407 21911601 ~ 21911880 (+)
G584643 NA other upstream 606721 21080828 ~ 21082615 (+)
G583605 NA other upstream 1449539 20238911 ~ 20239797 (+)
LOC110528807 LOC106574429 other upstream 1667609 20017855 ~ 20028775 (+)
G581976 LOC106581475 other upstream 2712337 18976678 ~ 18976999 (+)
G580997 NA other upstream 3196427 18492227 ~ 18492909 (+)
G585573 NA other downstream 257835 21953029 ~ 21953269 (+)
c7h10orf53 cssa17h10orf53 other downstream 661389 22356500 ~ 22360232 (+)
LOC110527523 stat1-2 other downstream 991295 22684527 ~ 22722539 (+)
G586685 NA other downstream 1314867 23010061 ~ 23015120 (+)
LOC110527540 LOC106533352 other downstream 1916158 23609520 ~ 23621369 (+)

Expression


Co-expression Network