LOC118965269 (pnpla4)


Basic Information

Item Value
gene id LOC118965269
gene name pnpla4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 21829164 ~ 21831559 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118965269
TATTCAATGAATAATGCTATGTTCTCTTTATAGAGATGACAGTGCCAGTGGTGAACCTTTCTTTTGCTGCATGTGGATTCCTGGGTATCTACCAACTGGGCGCATGTGGAGCCATACTGAGTTCTCTCAGGGCATGTGCTGGAGCTCTGGTGGCTGCAGTGATGATCACTGCTCCAGACAAACTAGAGGTAAGATACGAATTTACCTTCAGATTTGCCAAAGATGCCAGAGGCTTGGAGCTGTGAGTCCTGGATATAACGTCATGCTTACACTCAGGGAGGACATCGAGGAGTTTCTGCCTGGCGATGCCCACAATAAAGCAGGCAATCGCCTTCACATCTCTATAACGCATTCAAAAAGTGgcaagaacaccatcctatccaGTTTAGCCTCCAGGGAGGACCTCATAAAGCTAGCACTCTTGGCCAGTTGTTTTGTGCCTGTCTATGCTGGAATCAAACCGGTGGAATGACAAGGACAGGTAATAACTTTAGCTGCATCTCAAACTCAACCCATGGATGTTATCCTTTACGAGCTTACTGTTActtttttgttagtttattcatttTCTGCCCAAAACACAGAGGGCTCATGAACCTCCCCCTCAAACTGGCCAACATGGACAAAATGTTTTCCAAGGAGAACATCATCAGGTTAAACCAGTCCTTATCCCCTCCTTTAGAGGAAAGGATGAACCAGTATTGTAGAGGGTCATGACGATGcagtggtgtttctgatgaaaAGGGAACTGGATCTAGTAGGGTTGCAATTTCAATTGAGAATTTTGTTTTTAGTGTTTTTACTACTTTTAAATGTGGTGCATTCACATGATTTTAGATTTTGTGATAAGACATAGACAATGTAAGTAAAAATGTATAATTTGCTCTTTGCACATTCACTGCAAATCCACTGTAGCCCATACAATCAACAGTAATAACTCTATAATCTGAGGAGACGTTGGAATATCAGCATGTAACTATATCTCCCATGTGAGGTAACTGGGCTTGATGGACTTCCTTGTGGAAAATCAGTCTTTGAACACGCCTCACCAATTTCCAGCAGCGATCCATTACCCCTGAGCCAGCAGTGGCAGGCGATGGGGAAATCAGTAAGGCACTTCACAGAAGTACATAATATAACGGGCAGTGGAGTCACGCTAACCTAGCAGCGGTCCTTCAGCTCCTCCAGGACAAGGATGGAGTACCCCTTTGATGTTACCATAGAAATGGTTGTTTGAACTCTGCACGTTCTTCTCTCCTTCTGAGGAACCATTTAATTTCCTCCGGTCGTAGGGTATCGACGTGCACTGTGTTCaagatca

Function

symbol description
pnpla4 Predicted to enable triglyceride lipase activity. Predicted to be involved in lipid homeostasis and triglyceride catabolic process. Predicted to act upstream of or within lipid catabolic process. Predicted to be active in cytoplasm; lipid droplet; and membrane. Orthologous to human PNPLA4 (patatin like phospholipase domain containing 4).

NR:

description
PREDICTED: patatin-like phospholipase domain-containing protein 4

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118965269 True 1321 mRNA 0.44 5 21829164 21831559

Neighbor

gene id symbol gene type direction distance location
LOC110528814 LOC106575192 coding downstream 92241 21697817 ~ 21736923 (-)
LOC110527500 LOC106575190 coding downstream 144469 21673963 ~ 21684695 (-)
LOC110527499 LOC106575189 coding downstream 246110 21513832 ~ 21583054 (-)
LOC118965423 NA coding downstream 370139 21458900 ~ 21459025 (-)
LOC118965268 NA coding downstream 380361 21447707 ~ 21448803 (-)
LOC110527506 LOC106575199 coding upstream 258182 22089741 ~ 22163995 (-)
pudp hdd1a coding upstream 382064 22213623 ~ 22230742 (-)
LOC110512351 LOC106575201 coding upstream 530602 22362161 ~ 22368437 (-)
cd99 NA coding upstream 537094 22368653 ~ 22384989 (-)
LOC110527516 LOC106575207 coding upstream 624634 22456193 ~ 22460210 (-)
G585425 NA non-coding downstream 29291 21747682 ~ 21799873 (-)
G585421 NA non-coding downstream 76050 21739914 ~ 21753114 (-)
G585367 ralbb non-coding downstream 132594 21689320 ~ 21696570 (-)
G585359 NA non-coding downstream 207232 21621135 ~ 21621932 (-)
G585332 NA non-coding downstream 257854 21570995 ~ 21571310 (-)
G585528 NA non-coding upstream 82895 21914454 ~ 21914657 (-)
G585557 NA non-coding upstream 110039 21941598 ~ 21941915 (-)
G585576 NA non-coding upstream 123780 21955339 ~ 21955558 (-)
G585745 NA non-coding upstream 240191 22071750 ~ 22072028 (-)
G586015 NA non-coding upstream 447496 22279055 ~ 22279455 (-)
G585240 LOC106575179 other downstream 404579 21421454 ~ 21424585 (-)
LOC110527470 LOC103366558 other downstream 989828 20838415 ~ 20839399 (-)
otos2 LOC106575250 other downstream 1051099 20772867 ~ 20778065 (-)
G583661 NA other downstream 1579179 20215649 ~ 20249985 (-)
G586414 LOC106574278 other upstream 631649 22463208 ~ 22470518 (-)
LOC110527522 LOC106575212 other upstream 778602 22609884 ~ 22620248 (-)
LOC110527529 ngl1 other upstream 977094 22807676 ~ 22812906 (-)
G586878 NA other upstream 1252931 23084490 ~ 23087137 (-)

Expression


Co-expression Network