pudp (hdd1a)


Basic Information

Item Value
gene id pudp
gene name hdd1a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 22213623 ~ 22230742 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608823.2
AGTTGCCCATCTTCCTACTAaatatagctaacgttagcctgctagctagctagtgcttCGATTTCAAGATTGGATTTTGTCGTTGTGTTGGCAGCTACTGTAATTATGTCTACACAATCGATTTTTAAACCAGTGACCCATGTTCTTTTCGACATGGATGGATTATTATTAGaTACAGAGAGGCTGTACACGGTGTCATACCAGGAAGTATGCGACAGGTTTGGAAAGAAATACACCTGGGACGTGAAGTCTTCTGTGATGGGAAAGAAAGCTATGGAGGCTTCTACCATTATACGAGACTCCCTAGAACTACCAATGACACCAGAGGAACTTATCAGTGAGACTAGAAAAATACAGGAGAAGATATTTCCTTCAGCTCAATTGATGCAAGGAGTGGAGAATCTCGTCCACCATCTCCGTAAACACAATGTGCCCATCGCTGTTGCAACAAGCTCAGCAGGCCTGACGTTTGAGATGAAGACCAGTCAGCACAAAGCCTTCTTTGACCTGTTCAGCCACATCGTCCTAGGGGATGATCCCGATGTGAAAAACAGCAAACCTCAGCCTGACTCCTTTTTGGTGTGTGCCAGCAGGTTCACTCCTCCTGCACCTCCGGCCACGTGCCTGGTGTTTGAGGATGCTCCTATGGGTGTTAAGGCCGGCCTGGCGGCTGGGATGCAGGTTGTCATGATCCCTGATGACAATCTGGACCGAGGCCTTACTCAGGAGGCCACACTGGTCCTGAGGACCATGGAGGACTTCAAACCAGAGATGTTCGGCCTGCCGGCCTATGACTGAGCTCCATCTCCGCTTCCTGCTCAGGGCTGAGAACCTCCAATCCACCCCTGCTTTTTACCCTCCATCTTCACCATTTAGCCTGATCAAAGCAATGTAAAGATGCTAATCACAACGATCACAATGCTGATCCAAATTATGCAATGACTCGGAATTTGATTATTACTTGGAACTGTGATCAAGTTGTTGTTAGTCGAATATTAATATTTTTGCTTTGGCCAAATAATGAGAACGGCTGAGAATAATGGTTGAACATAATGTGAGGTCAACATAATGAGAGGTCATTTTTTTGTCTGAACCTTTTACACCGGTTTGGTATTGTAAGCAACTCGCTGCCGATCAGTTTAAAGGCTTTTATTGTGATTTGGTGTGCAttctaaatggcaccctgttccctacatagtgcactacttttgaccagagtccaacACAGTCATTCTAGGTAAAGATGTATCCGTCTCTGAGTTAATGTCCTTGAACAGATTTCATAACCAACTGCAGTTTAAGCTGTTCGATTCTCCCTCTTTTCCCTGCGTCATACCATTTGCCACTCTTCTTTGAGCGGGGCCTATTGAAATGCCAAAGACACTTTTCCCAGCTTGGATGTGTAATCCAATAAAGATGGTGAGAGAAATCTTCA

Function

NR:

description
pseudouridine-5'-phosphatase-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K17623 PUDP, HDHD1; pseudouridine 5'-phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608823.2 True 1435 mRNA 0.45 4 22213623 22230742

Neighbor

gene id symbol gene type direction distance location
LOC110527506 LOC106575199 coding downstream 49628 22089741 ~ 22163995 (-)
LOC118965269 pnpla4 coding downstream 382064 21829164 ~ 21831559 (-)
LOC110528814 LOC106575192 coding downstream 476700 21697817 ~ 21736923 (-)
LOC110527500 LOC106575190 coding downstream 528928 21673963 ~ 21684695 (-)
LOC110527499 LOC106575189 coding downstream 630569 21513832 ~ 21583054 (-)
LOC110512351 LOC106575201 coding upstream 131419 22362161 ~ 22368437 (-)
cd99 NA coding upstream 137911 22368653 ~ 22384989 (-)
LOC110527516 LOC106575207 coding upstream 225451 22456193 ~ 22460210 (-)
cep70 LOC106575208 coding upstream 240093 22470835 ~ 22478890 (-)
LOC110527519 LOC106575210 coding upstream 257143 22487885 ~ 22515173 (-)
G585745 NA non-coding downstream 141595 22071750 ~ 22072028 (-)
G585576 NA non-coding downstream 258065 21955339 ~ 21955558 (-)
G585557 NA non-coding downstream 271708 21941598 ~ 21941915 (-)
G585528 NA non-coding downstream 298966 21914454 ~ 21914657 (-)
G585425 NA non-coding downstream 413750 21747682 ~ 21799873 (-)
G586015 NA non-coding upstream 48313 22279055 ~ 22279455 (-)
G586024 NA non-coding upstream 52804 22283546 ~ 22284025 (-)
G586306 NA non-coding upstream 58172 22288914 ~ 22289410 (-)
G586313 NA non-coding upstream 80624 22311366 ~ 22311538 (-)
G586319 NA non-coding upstream 81536 22312278 ~ 22312497 (-)
G585240 LOC106575179 other downstream 789038 21421454 ~ 21424585 (-)
LOC110527470 LOC103366558 other downstream 1374287 20838415 ~ 20839399 (-)
otos2 LOC106575250 other downstream 1435558 20772867 ~ 20778065 (-)
G586414 LOC106574278 other upstream 232466 22463208 ~ 22470518 (-)
LOC110527522 LOC106575212 other upstream 379419 22609884 ~ 22620248 (-)
LOC110527529 ngl1 other upstream 577911 22807676 ~ 22812906 (-)
G586878 NA other upstream 853748 23084490 ~ 23087137 (-)
LOC110527533 s100b other upstream 931152 23161894 ~ 23165209 (-)

Expression


Co-expression Network