LOC110527508 (LOC106574269)


Basic Information

Item Value
gene id LOC110527508
gene name LOC106574269
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 22290515 ~ 22312038 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608824.2
CCACCGCTCGTTTGCCCTGTATGTGTGTTGTTGAACTGGGTGAGGTTCTACTTGCGAACGAAGCGGATGAGTAAATCATTTAAATGTCTCAAATATCTTTCTTGCTAGCCAACTAGCTTCCTATGACGGAAGTTAAACTAGCGAGACAACACGAGACCCCCTAGCTACTCAAGTGGCGGCTCGTGTGGAAATGTGCAGTATGCGTTTGTAGTTTGACATTAGCTAGCTATAGTAGCGTTGGTCATTCATTCAGTCGCTAGCGGTGGGATGGTTTTCTTTTGTGTTAGCTATATATTGCTAGCGACTCTGTTTGCTATGGCTAGCTAGCGTCTGCATTTGACAGCAGTGACCGCTCGAGAGACATCATGCGATTCCGCCAGGATACGATCGGCACCTGTTTTCTAGCTATCAAGACAAGATGCTCGCTTGTCCAAGGGAAGTAGCCACATTTGATTTAAAACCATAGTTGGTATTCGGGAATAAGGCGGAAACTGATCTTGAGAATTGGCTACTGTAAACCGTCATTGACTATCTATCCTCGGCGAAACCGGtttggtagctaactagctggcTAAAGTGATTGCTAGTATAGCTACATTTGGATGCATACGGAAAATGGCATCAACAAAGGCAAAGGTTGGGATAACTAATGAAAGCAACTCCATTCGTGAGAGTGCCAAGACCTGCGCGAGCAGTCCCATGTTATTGGCCGGAGCAGCATCGTTAACGTTGAACAACAGGACATACTCACTCGATGACCTGGACACCATTTCCACAGTTGGCACAGGGACCTTTGGCAGGGTGTTCCTGGTGAAAGACAAGAAGAGCAGGGCGTTCTACGCTCTGAAGGCGATGAAGATCCCAGACGTGATCCGGCTGAAGCAGGAGCAGCACGTCCACAACGAGAAGGAAGTCCTGACCGAAGTCAACCACCCCTTCCTCATCAGACTGTTCTGGACCCACCATGACGATCGTTTACTCTACATGCTGATGGACTACGTTCCAGGCGGGGAGCTGTTCAGTTACCTCCGTAGCCGCGGGCGCTTCAGCAACACCACGGGCCTCTTCTACTCCACGGAGATCGTGTGTGCCATCGAGTACCTCCACTCCAAAGAGATCGTCTACCGAGACCTGAAGCCGGAGAATATACTGCTGGACAGCGAGGGACACATCCGCCTCACGGACTTCGGCTTCGCTAAGAAGCTCTCGGACAGGACGTGGACTCTGTGTGGAACCCCAGAGTACCTGGCCCCAGAGGTCATCCAGAGCAAAGGTCATGGCCGGGCGGTGGACTGGTGGGCCCTGGGGATCCTCGTCTTTGAGATGCTGGCTGGGTACCCACCGTTTTTTGACGACAATCCCTTTGGTATTTATCAGAAGATTCTCGCCGGGAAGCTGGAATTCCCGCGGCATCTGGATTTTTATGTAAAAGATCTCATCAAGAAGTTTCTCGTCATTGACCGAGCCAGGAGGTTAGGCAATATGAAGAACGGAGCAGACGATGTGAAAAAGCACAGATGGTTCAAGTCTATAGACTGGGATGGTGTTCCTCTGAGAAAACTGAAGCCACCCATAGTTCCCAAGGTGTCCCACGAAGGTGACACGTCTAACTTTGATGCCTACCCCGAGGACGAGTGGAAGAAAGATGCACCTGTGCCTGCAAAGGACTTGGAAATCTTCAAGGACTTCTAGAAAGGCGGAAGTAACGACAGACATACTTCGAAAACATTTAGGTCTTGTAGCGAGAGACTCAGGAACTTTTAGACCTTGGAGAAGGTGAGTCAAACTTCTAGATGTTGAAAAAATACCGACTTCTGGATCTTGCTGAATAACAGAAGGACTGGTAAATCATCTGAGATGTCACCATTGTATGGTCAGCAAGAGAACTTCCAAGCGTCCAAGTCCCAGAACTTTATCTTGCTTGAAGACATTGAAGTGTTCCACAGAATTGACCTAAAAATAACTAAAAGAGCCATCATATCGCCACAATATTCATCTAGCATTCATTTCCTTTCGtttgaaaaagtttttttttccaCTTAACTAACACCTCAGTCCTCAGTTTCTTTGTTTCTCTGAGCCTTCTCCTgttatgcaaaaaaaaaagaaaaaaaaaaagatggtCCTCTTTGAACCAAAGGGCATTGTTACTGAAATGAATATGTTTAAAATGCAATATTCAggatttttttatgtattttgttGGGCCAAAAAGGTTCCAGTTTTCTTTGTTGGAACTTGTAGGACTCAACCAACCGAGCAAAGCTTATGATCCAAAAATGATCACGCATACAGTAGACTCAGTATTGAGCTGTACAGTAAATGGAATTTACATGTGTAGTTACTACATCCATACTTAGTAGATTGTACTTGACATTTGTCAATGAGAAAGTATGAAACTTGTAGAGGAACGTACTACAATATCATGCCAAGCAAGCTTTGTAATATCATTTTATTGACTGGCCGCTAGTCAAATAGGCTGTTAAACTTGTCATTTTGAGCTGTAAGTACTTGGCTATCTATCGGCCGGATATCCATGCATGTGTGCATCAAGGCCAGACCAGAAAGCTCTTGTAAAAGGTGCCTTACTTACTTCAGGAGCTTGGATGTGACATACTGTATGCCTTCGTCTTTTCTCCTGACAAGCTAGTGGTACTTTTTCAACTTTTATTTATAGAACACACACTGTTTATACTTGAGCTGTGCTGTTGAAAACGTTGACTGTTAATCATAATATATGTGGAGTAATTGTTGTGTGGAAGAAGTGTAGCTAGCTACTATATGTGGAATCTGGTTCCTCCCCGTCTTTTTCTTCCGTCCACCTCGTCCTATTTTGCTGTTCACACAGTAACAAAAAATGACCCTGTGTATTGACTGGTGTCTATCTTTGTCTCTAGGTCTCTTTCATTTACTTTAAAGAACTGTAGAATACAGATCTCCAGCTGGTTTCATGTATAGCCAAGCAGGAAGTAGTCTCAGTAAGATGCTTGGCCATCTGCTTCAGGCATCCAATAAACTCTTGTCTTCTCTCCACCAATCATATCACTGGCTAGTAGAAAGCACATCATGAGGCAATCACAAACTGTCTCTCGAAAAAACGTACTTAGTAACAAACAGTAAGTCATTTGTGTCCCTTTTAGTCAACTTAAATTATTTGATTTGAACAATTTGATTGCGTGTATGTCATGTTTTATGTATATCTCTTAACCAATCATGGAACAAAACTCAGTGTGAGTTTATTCGGTCCGTTTGTATAGCTTTTTTTACGTAtttgttttaattattttatttttagtgtGAAGTGTGTTTCTAGGGAATTTGCTTTACAATCCTCAGCCTTttgccattttttttaaagatgtttATGTATTAGCAAAAAGAAAACAAATATGAAAGAAAAAAATACTGTACTTTTAGGTCAATACAAGCATATATTTTATACCCAATACCATTTTACCAATGCCTTTTGTCAGTGTatagattttttaaattattatttaacAGCCTACCTTACATGGCCTTTTCATATGGTTAATGTCGCAGTATTGTATTTAACTTCTTCAGATACTGTTTAAAAGATCCACACAACCAGGATTATAAACACCTCCTATCCACTGACTCAACAACTGATTCTCTTTCCTCTCTGAAGTGTGGTTATAATATATTGTAATGTATAAATAGTGTAAGTAATTTGGTAATTGCTATACTTTGCTTTCTGATAGGCTAGGTGGAATTGTCTCCATATTGCTTACATCTATGTAATCATTTCAGACATGCCAGAGTACTTGGGGTGGTAGGAGCCAGGGTTAGATTTGTAATTCAGCGTAGGATGTGATTTTCTATTTCCACATTGGTTTTGTATTTAATCTAGACAATATGTAAGTGATGTGACTGACTGTTGTCTGGTTGGCCAAATGCTATTACAGTATCAAAACCTTTAATCTTCTCTATGGTTCAATAGCTCTTAGCTGGCCTTAGAAGTGTTAGCTACCACTATTTCAAGTCATCAGACAAATGAACTTTCGGAGTGTTACCGTCGGTTGGTAATTTGTCTACAAGTTCACCGGCCTAGTCTGTATCTACCCAACATTGAAATTGAGTTGTGTGTGCATGAACACTTAAAACCGCACATCAGTCAGCGA
>TU668423
AATGAACTTTCGGAGTGTTACCGTCGGTTGGTAATTTGTCTACAAGTTCACCGGCCTAGTCTGTATCTACCCAACATTGAAATTGAGTTGTGTGTGCATGAACACTTAAAACCGCACATCAGTCAGCGATTCTGGAGCTTCATTATCCCCTCTCTTAAAGGCTCTCATTCATCCAAATTCATCTAAAAGGTATAGAGGTATAGTTGGTGCCTGTACGGACTACAGGCACCAAGGTACCATTTTAAAGGTGCCCTATTTCAAGAAAGTCATTAGTGTTTACAGTGGAAAGTGACTCATGTGTTGTCTGGACCTCCTTGTGTTGCATGCTG

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608824.2 False 4142 mRNA 0.42 8 22290515 22311838
TU668423 True 329 lncRNA 0.43 1 22311710 22312038

Neighbor

gene id symbol gene type direction distance location
sts sts coding upstream 464490 21812987 ~ 21826025 (+)
LOC110527503 LOC106575196 coding upstream 500336 21762128 ~ 21790179 (+)
LOC100136615 LOC100136615 coding upstream 538990 21749340 ~ 21799872 (+)
LOC110527502 LOC106575193 coding upstream 546515 21737749 ~ 21744000 (+)
LOC110527501 ralbb coding upstream 595321 21689336 ~ 21695194 (+)
mxra5a LOC106574270 coding downstream 15733 22327571 ~ 22347037 (+)
c7h10orf53 cssa17h10orf53 coding downstream 44662 22356500 ~ 22360232 (+)
LOC118936317 LOC106574274 coding downstream 74032 22385870 ~ 22416150 (+)
LOC110527515 LOC106575209 coding downstream 148472 22460310 ~ 22470522 (+)
LOC110528815 ftcd coding downstream 309165 22621003 ~ 22634558 (+)
G586031 NA non-coding upstream 1180 22289047 ~ 22289335 (+)
G585855 hdd1a non-coding upstream 59674 22227672 ~ 22230841 (+)
G585818 NA non-coding upstream 104371 22162860 ~ 22186144 (+)
G585757 NA non-coding upstream 212268 22078042 ~ 22078247 (+)
G585633 NA non-coding upstream 295225 21994888 ~ 21995290 (+)
G586043 NA non-coding downstream 3642 22315480 ~ 22315719 (+)
G586044 NA non-coding downstream 3905 22315743 ~ 22316002 (+)
G586045 NA non-coding downstream 4307 22316145 ~ 22316373 (+)
G586047 NA non-coding downstream 5238 22317076 ~ 22349230 (+)
G586079 NA non-coding downstream 56835 22368673 ~ 22370163 (+)
G585573 NA other upstream 337246 21953029 ~ 21953269 (+)
G584643 NA other upstream 1207900 21080828 ~ 21082615 (+)
G583605 NA other upstream 2050718 20238911 ~ 20239797 (+)
LOC110528807 LOC106574429 other upstream 2268788 20017855 ~ 20028775 (+)
G581976 LOC106581475 other upstream 3313516 18976678 ~ 18976999 (+)
LOC110527523 stat1-2 other downstream 374651 22684527 ~ 22722539 (+)
G586685 NA other downstream 698223 23010061 ~ 23015120 (+)
LOC110527540 LOC106533352 other downstream 1299514 23609520 ~ 23621369 (+)
G587660 NA other downstream 1495884 23807722 ~ 23808000 (+)

Expression


Co-expression Network