LOC110512351 (LOC106575201)


Basic Information

Item Value
gene id LOC110512351
gene name LOC106575201
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 22362161 ~ 22368437 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036982999.1
TTGAATGACCAGTGACACATGACCGAGAACTCAAACAGAGAGACTGATTTTGCTCTTGGTCTAAAAAACGGCAGATTTATTTGTGTATCTACCAGCTTGAGGTTACACCCCCTGGCTTTAGATATAACCTCTCATAGTACATTTACAACTAATACTACTAAACTTTGAAATagctgtaatttaaaaaaaaaaaactttgtatTGATCATTCTGTATCTATTGTTTGCGGGACAGTTACTACTGCTGGACTCGCTGGACTGTCGGACTGCAGTATCAACATATTGGAGTTTCATTTTAGGGGAAACCAGTGCATTTTCTGCCAAGTCCTCTCTGCCAGTGGTGCGGGACCTGATCGATCACTTTGACACTTCTAATACCATCTATCACTTTTACCTCTGCCTCAAGTTGTTGTTCGTTTAGAGGAGTCGCTGTCACACACCATGCCAGCGAACCAGGCCTTTGTCACCCTGGCCACCACAGACAGCTACTGCATGGGGGCTCTGGTGGTAGGACAGTGTTTACGACGACACAGGACCACACGCCAGACTGTTGTGATGGTCTCCACTAATGTCTCTAGCCAGGCACGGGCTGCCCTGGGCCATGTGTTTGACCGGGTCCTGGTAGTGGATGTGTTGGACAGTGGAGACCAAGCACATCTATCCTGGCTGGGACGACCAGAACTGGGTGTCACTTTCACCAAGCTCCACTGTTGGACCCTCACCCAATACAGCAAATGTGTGTTCCTGGATGCAGACACACTCGTGCTGTGTAACGTGGACGAGCTGTTTGAGCGTGAGGAGCTGTCTGCGGCCCCTGACCCTGGCTGGCCGGACTGTTTTAACTCAGGGGTGTTTGTGTTCCGGCCCTCTCTGATCACCCACGGCAGGCTGTTGGAGCATGCACGACAACACGGCAGCTTCGACGGTGGGGACCAGGGCCTCTTGAACACATTTTTCAGTGACTGGGCTGTTAGAGATATCAGTAAACACCTGCCTTTTGTGTACAACCTCAGTGCCATCGCAGTCTACACCTATTTGCCTGCTTATCAAGAatatggtcacaatGCTAAGATTGTCCACTTCCTGGGTTCGGTCAAGCCATGGAATCTACGTTCTAACTCACAGACCAatcagcacaccaacagccaccTGGAAGAGTTTGTTTACCAGTGGTGGATGGAGTACTCCTACTTACATCACCTTATAAAGACAATGTCCCATCAAGAACCTGCTGTGCCAAGCCAACATGCCGGGCCAAAGCAACATCGTACCCAACGTCAGGGTGTATCCacggggaaggagggaggagctgGAGACAGAACAGCAAACCAGGACCCACCTGGACCCAGTGAGGAAGGGTCAGAGGTCACTGAAACGGCCTTCAACCCCATGGAGGATCCTGCCACTGAACCTACTGCTGCCAAGACAGAGGAGGATGATCTGGAGCAGCGGAGGCTGTGGGAGGAGGGCCAGGTGGACTACCTGGGCAAAGACGCCTTCGACAACATCCAGAAAAAACTGGACCGATTCTTATATTTGTAGCTTGTTTCGTGTGGCAAGATACTGTAGCAATAGTACTGTATACTCATGTTCATGTTGAAGTGTGTTATGTCTCTAGCGTAGACCACCACTCTAATAGGGGTTTCTGTGTCCctttgctgtaaaaaaaaaaatatataaacttgATTccaatttcatttaaaaaaatgtgctcAGAATTCATGTTGAGATGCATTCCTTATTTTGATGTTATGCTGGATATATCTGGAAGATTTTAAATGGTCTCTATGTTGCCACTAGAGGGCACTGTGGCTTTTTAAATAAAGCACATTTCCTGGTCAAAG
>XM_036983000.1
TTGAATGACCAGTGACACATGACCGAGAACTCAAACAGAGAGACTGATTTTGCTCTTGGTCTAAAAAACGGCAGATTTATTTGTGTATCTACCAGCTTGAGGTTACACCCCCTGGCTTTAGATATAACCTCTCATAGTACATTTACAACTAATACTACTAAACTTTGAAATagctgtaatttaaaaaaaaaaaactttgtatTGATCATTCTGTATCTATTGTTTGCGGGACAGTTACTACTGCTGGACTCGCTGGACTGTCGGACTGCAGTATCAACATATTGGAGTTTCATTTTAGGGGAAACCAGTGCATTTTCTGCCAAGTCCTCTCTGCCAGTGGTGCGGGACCTGATCGATCACTTTGACACTTCTAATACCATCTATCACTTTTACCTCTGCCTCAAGTTGTTGTTCGTTTAGAGGAGTCGCTGTCACACACCATGCCAGCGAACCAGGCCTTTGTCACCCTGGCCACCACAGACAGCTACTGCATGGGGGCTCTGGTGGTAGGACAGTGTTTACGACGACACAGGACCACACGCCAGACTGTTGTGATGGTCTCCACTAATGTCTCTAGCCAGGCACGGGCTGCCCTGGGCCATGTGTTTGACCGGGTCCTGGTAGTGGATGTGTTGGACAGTGGAGACCAAGCACATCTATCCTGGCTGGGACGACCAGAACTGGGTGTCACTTTCACCAAGCTCCACTGTTGGACCCTCACCCAATACAGCAAATGTGTGTTCCTGGATGCAGACACACTCGTGCTGTGTAACGTGGACGAGCTGTTTGAGCGTGAGGAGCTGTCTGCGGCCCCTGACCCTGGCTGGCCGGACTGTTTTAACTCAGGGGTGTTTGTGTTCCGGCCCTCTCTGATCACCCACGGCAGGCTGTTGGAGCATGCACGACAACACGGCAGCTTCGACGGTGGGGACCAGGGCCTCTTGAACACATTTTTCAGTGACTGGGCTGTTAGAGATATCAGTAAACACCTGCCTTTTGTGTACAACCTCAGTGCCATCGCAGTCTACACCTATTTGCCTGCTTATCAAGAatatggtcacaatGCTAAGATTGTCCACTTCCTGGGTTCGGTCAAGCCATGGAATCTACGTTCTAACTCACAGACCAatcagcacaccaacagccaccTGGAAGAGTTTGTTTACCAGTGGTGGATGGAGTACTCCTACTTACATCACCTTATAAAGACAATGTCCCATCAAGAACCTGCTGTGCCAAGCCAACATGCCGGGCCAAAGCAACATACTGCTGCCAAGACAGAGGAGGATGATCTGGAGCAGCGGAGGCTGTGGGAGGAGGGCCAGGTGGACTACCTGGGCAAAGACGCCTTCGACAACATCCAGAAAAAACTGGACCGATTCTTATATTTGTAGCTTGTTTCGTGTGGCAAGATACTGTAGCAATAGTACTGTATACTCATGTTCATGTTGAAGTGTGTTATGTCTCTAGCGTAGACCACCACTCTAATAGGGGTTTCTGTGTCCctttgctgtaaaaaaaaaaatatataaacttgATTccaatttcatttaaaaaaatgtgctcAGAATTCATGTTGAGATGCATTCCTTATTTTGATGTTATGCTGGATATATCTGGAAGATTTTAAATGGTCTCTATGTTGCCACTAGAGGGCACTGTGGCTTTTTAAATAAAGCACATTTCCTGGTCAAAG

Function

NR:

description
PREDICTED: glycogenin-2

GO: NA

KEGG:

id description
K00750 GYG1, GYG2; glycogenin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036982999.1 False 1843 mRNA 0.48 8 22362161 22368437
XM_036983000.1 True 1696 mRNA 0.47 7 22362161 22368437

Neighbor

gene id symbol gene type direction distance location
pudp hdd1a coding downstream 131419 22213623 ~ 22230742 (-)
LOC110527506 LOC106575199 coding downstream 198166 22089741 ~ 22163995 (-)
LOC118965269 pnpla4 coding downstream 530602 21829164 ~ 21831559 (-)
LOC110528814 LOC106575192 coding downstream 625238 21697817 ~ 21736923 (-)
LOC110527500 LOC106575190 coding downstream 677466 21673963 ~ 21684695 (-)
cd99 NA coding upstream 216 22368653 ~ 22384989 (-)
LOC110527516 LOC106575207 coding upstream 87756 22456193 ~ 22460210 (-)
cep70 LOC106575208 coding upstream 102398 22470835 ~ 22478890 (-)
LOC110527519 LOC106575210 coding upstream 119448 22487885 ~ 22515173 (-)
fam207a cu070 coding upstream 194844 22563281 ~ 22587668 (-)
G586322 NA non-coding downstream 45424 22316503 ~ 22316737 (-)
G586319 NA non-coding downstream 49664 22312278 ~ 22312497 (-)
G586313 NA non-coding downstream 50623 22311366 ~ 22311538 (-)
G586306 NA non-coding downstream 72751 22288914 ~ 22289410 (-)
G586024 NA non-coding downstream 78136 22283546 ~ 22284025 (-)
G586392 NA non-coding upstream 75849 22444286 ~ 22444523 (-)
G586405 NA non-coding upstream 77511 22445948 ~ 22446181 (-)
G586411 NA non-coding upstream 85824 22454261 ~ 22454824 (-)
G586414 LOC106574278 non-coding upstream 96334 22463208 ~ 22470518 (-)
G586398 NA non-coding upstream 117847 22486284 ~ 22543581 (-)
LOC110527499 LOC106575189 other downstream 843288 21513832 ~ 21583054 (-)
G585240 LOC106575179 other downstream 937576 21421454 ~ 21424585 (-)
LOC110527470 LOC103366558 other downstream 1522825 20838415 ~ 20839399 (-)
otos2 LOC106575250 other downstream 1584096 20772867 ~ 20778065 (-)
LOC110527522 LOC106575212 other upstream 241724 22609884 ~ 22620248 (-)
LOC110527529 ngl1 other upstream 440216 22807676 ~ 22812906 (-)
G586878 NA other upstream 716053 23084490 ~ 23087137 (-)
LOC110527533 s100b other upstream 793457 23161894 ~ 23165209 (-)

Expression


Co-expression Network