LOC110527516 (LOC106575207)


Basic Information

Item Value
gene id LOC110527516
gene name LOC106575207
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 22456193 ~ 22460210 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608841.2
aaaatcgATTTGAACAGCCATCCAACTAGGAATtccaactcttcctagagctctgactttccgaaCTTAAAATACAGACTTCAttatttgacctcgtatttttccgAGTTTCCGGGTGTTTTGAACCCTGCATTAATACCACAGATAGATATTGAGCCAGATATTAAACCGGAtttataaatgtgaagcatccggttggcgtttcctctcactaccaaatatgttAATGCAAGGAAGCCCAGTGACCGGCATGGTGAGAAGATGGAGTGAGATATATTTTGGCCAACATTCTGCTAATTTTCTaatcgatgaaacatttgatctccataAAGTTTTATGTTTCCGAAACTATAATCTATAACAAACAGAGTGGACTGCGTCTTTGCCAAAGTAAAACAAAAATGGGTTGTTTATAGGTGCGAATTCCCTTATTGCACAGGCGCATTCATAGAATGCGTTCCCTAAcaaaaatatgcaaataaatactAGAACGTGAGATTGAGATCTCAATAGCTAGTGCATGGCTCTTCCCATCTCCTTGCTTGTTCTACCCACCATGATTAATTtcctcccattggaaacgacagcctctggtctatcttgggttagttataaaaatctttgGTCTGACGTTCATTCATTACCCAAGGGTAACTATCTCCTCCTTTCTCTAATGTCTCTGTAGTGGATCGCTGTGACCATAGAAATAAAACGGATAGACAGGTCTGCTTGCAAAAGTGGGTCCTTCCTTACTCAACTCTGGGTGGGGTGACGGTTCTATTAATTTATATTCTGTATCAAAGAAGCACAAGGTTTGAGGATGATGTGATGAGACAACACCAACCAGGGCAGGTGAAAATCGTATTTATACGGGCTGATTAAACTCTAGCTAATTTATAAACATAAAAAGGAAGgtcttttttttaattttattttttagatcTGTAAGTGGTTTACCGTAGccttttaattaattaattttttaAATCAGTAATGGCGACCGAGTGCACCCAAGAAGCGGTTGTTCAATTTCTAATCGAGCGAGGAGGGAGAGTGAAAAATCAGATATTCATTGACTATTTCAAAGCTGTTTTCCCAGAAGACCCTGACCAGAAAGCAATTGTTCGGGAGAAATTCAAGGGATACGTGGACAACGTCGCATTTGTAAAGTTGGAGAATGGAGTGAAATGTGTATGTTTAAAAAAGAAGTATCGAGTTTCATTGAAGTATACAGTGGAAAAAGACAGCGAGTGCAATGGTAACGGGACAGGCACCTTATTGGAACAAGAGGACAGCGGTGCTGCTATATCAAAATCATATAAGAACTTGATAGAAGATTGTGCACCACAACTGCATCTGTCAGTATCATCTGCTGGGCATGTGCACTCTTGGGAAATCACTGCAAACGAAGAGGCACAAGACATTTCACTTGGCTCAGGTTACGGAACTGACAATGCCACGAGAGCGAGACCGCCTGACATTTCTGGAATTATTTTGGAAGGTAAAATTGTAGAAAGAGCTGCGTCAACAAGGTCTGTAGTTCAAAATAATAGTTTATCAGACAATATGGGAAATGCGTTAGGCATTGGTGGTAATGCAGAGCAGAAATTGACCAAGGGGGACATTCATTGCAACCGCACGACATTGCAACCGCATGACATACCGCAAATTGCAGTGATTGAGGCGTCACCTTTACCTACATCCGCGGATGGCTCTATGTTCCCCTTACCCATACGTCCATTTCCAACTAATGCACAGGACAGCCTGCTGTCCCGTCACCCTTCAACAGAGGACGGGGCAGACGAAAGCCAGTATTATGATTTTCAACAGAGCATATCTGGGAGTGACAGCTACACACCTAAAAGTAGCCGTAATAACTTTATTGAGCTCATGATGAACAGCTCCCTCCAGGTGCGACGCAGCATGGTGTTGAGGAACTCGGACTCCGCCTCTGTGGTTTCCTCTACTACAGACGAAGACGGTGCTTCAGTCACTCTGGACCCGTTGGAACACGAGTGGATGATGTGTGCATCCGACGGCCAATGGGAGAGTCTccaccctctcctttcctctgaaCCAAACCTTGTCATGAAGAAGGATTTTGTGACTGGGTTCACCTGCCTGCACTGGGCCGCAAAGCAGGGCAAACAAGAGCTGCTAGCGCTTCTCGTGAACTTTGCCAAACAACACACAGTGCCCATCAACATCAATGCCCGATCAAGTGCCGGCTACACGCCCCTACACCTAGCAGCAATGCACAACCAAGTTGAGGTGGTGAAGTTACTGGTAGGTGCCTATGACGCAGACTTAGAGGCCAGAGATTATAATGGGAAAAGGGCGTGTCAGTATCTTACAAACAGTGTGGCCGTTGATATCCGTGACATCATCGGGGCGGGTGTTGGCGGCGACTCGGACTCAGAGAACACAGACTATGGGGATGGGGGGCGTTGGAGGTTGTCTAAAGTTCTCCAGTCTAATCTGATGCCCCTCAAACTGCACAATCACAGCGAGGAGGACACAGGTGATGGAGTAGACCAGGCCAGACAGAAACCCTTGCTGAGGAAATCGTCCTTTAGCAAGATGAGGCCCAAACTCCAGAAGATCCGCTTCAGATCTTCGCAGATAGTTCACAGCACTTCGTTCCCAGCACACTGTGAGACAGAGGAGCTTAACGGGTCCAGGAAAAGCTCATTTAAATCCAGACCCATGTCAAATCTGTTTGGCTGAGGAATAGCCCCTAAATTCACTCGACAAAGAGCAAATCAACTACTACAGTGCAGAATGACTGACACAATGGGGTATAGTTTGATGTTACAAgtgtttatgttttttttttgtggcatAGGCCAAGTCTGGTGTTACACATACTTAAGGGTTTTCCTCTAGGCATTATATGAATATACTGAACTAACAGAATATGGTATTACATGATCTATTGAGTAACTGGCCAGATTGTCACCCCTGGTTAGGCTAAAAAATGTATGTGATGTATGTCTTATCATTCCGAAGTAGCCAAGTAGGTCTTATTGTTCGTCTGCTTGAACCCTTAGCGTACATGTAAAGCTGTCTGTAACCCACTGGGCAAAGATGTCATTTTAACATCTAGTTTTGGTTGAGTTGAACTAATTTGAATTCagtgtgaaatcaacaaaaaatgacacaatgtcattggatttaggttaaaagttgggtgattTAAAAAGATACGATTAACTTACATTGATTACTTTTTTTCAAAGCCAATCAGTTTCCCTCGTTGATTTGATGCCTTCATatttacttttttgttgttggttgAAATGACTTGGGAACCAGGTTGACTCGACCTGTTTTTGCCTAGTGGGAAGTGTTTAAACGTCAAGTTATTTCACCACATGGTAGAAACAATGTCATTGATTTCACAACGCTTGGGAACAATTCTATCTTATTACTGTCAGACTGTTATTCGTTTATTCTCCCTTTTATATTTACGTTGCTTAAAGCACTTTGATTTTAAACTGTTATTGATCCAGCTTTCCTGCGGTTGATGCCATTCAGTCCACCTGAAAGACTTTGAGATGGGAATTGACTTCCTCTTTGTGTTCAAGTGGACGATTGGAGGCCAACGAAAAGGCCTCTGGTCTTTTACGTCTGTAATCAGGGTCAGTAGAGGAGATTTCTGTGTCACAAGGTACGCGGTTGTAGAGTGCATGGTAGGCCGACTGTTTATAGTGATGAAAGATCAGGTTTCATTCCTATTCATGTTTAAAAAAGGTACATTTTTTTGACCTGATAGCTCCTTATTTTGAGTTGTCTAAGGTTGCAGTCGTCTGGTATCAAGTTGTAGGTTACCCTCTGTTCTGTTTTATATCAACAAGCTCAGGCTTGCCGACCCAGGAGAGCCTAGCTCAGCtgagagtgagcaagagagacTAGTGTACatttagtgccttcagaaagtgttcatactccttgacttattccacattttgttgcgttacagcctgaattcagaattgattaaatatatgtgTTTCtg

Function

NR:

description
ankyrin repeat domain-containing protein SOWAHC-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608841.2 True 4018 mRNA 0.43 1 22456193 22460210

Neighbor

gene id symbol gene type direction distance location
cd99 NA coding downstream 71204 22368653 ~ 22384989 (-)
LOC110512351 LOC106575201 coding downstream 87756 22362161 ~ 22368437 (-)
pudp hdd1a coding downstream 225451 22213623 ~ 22230742 (-)
LOC110527506 LOC106575199 coding downstream 292198 22089741 ~ 22163995 (-)
LOC118965269 pnpla4 coding downstream 624634 21829164 ~ 21831559 (-)
cep70 LOC106575208 coding upstream 10625 22470835 ~ 22478890 (-)
LOC110527519 LOC106575210 coding upstream 27675 22487885 ~ 22515173 (-)
fam207a cu070 coding upstream 103071 22563281 ~ 22587668 (-)
plcd4a LOC106575211 coding upstream 127636 22587846 ~ 22609469 (-)
LOC110527522 LOC106575212 coding upstream 149674 22609884 ~ 22620248 (-)
G586411 NA non-coding downstream 1369 22454261 ~ 22454824 (-)
G586405 NA non-coding downstream 10012 22445948 ~ 22446181 (-)
G586392 NA non-coding downstream 11670 22444286 ~ 22444523 (-)
G586322 NA non-coding downstream 139456 22316503 ~ 22316737 (-)
G586319 NA non-coding downstream 143696 22312278 ~ 22312497 (-)
G586414 LOC106574278 non-coding upstream 4561 22463208 ~ 22470518 (-)
G586398 NA non-coding upstream 26074 22486284 ~ 22543581 (-)
G586488 NA non-coding upstream 104272 22564482 ~ 22605033 (-)
G586522 NA non-coding upstream 160789 22620999 ~ 22624553 (-)
G586539 NA non-coding upstream 225355 22685565 ~ 22685824 (-)
LOC110527499 LOC106575189 other downstream 937320 21513832 ~ 21583054 (-)
G585240 LOC106575179 other downstream 1031608 21421454 ~ 21424585 (-)
LOC110527470 LOC103366558 other downstream 1616857 20838415 ~ 20839399 (-)
otos2 LOC106575250 other downstream 1678128 20772867 ~ 20778065 (-)
LOC110527529 ngl1 other upstream 348443 22807676 ~ 22812906 (-)
G586878 NA other upstream 624280 23084490 ~ 23087137 (-)
LOC110527533 s100b other upstream 701684 23161894 ~ 23165209 (-)

Expression


Co-expression Network