LOC110527515 (LOC106575209)


Basic Information

Item Value
gene id LOC110527515
gene name LOC106575209
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 22460310 ~ 22470522 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983006.1
TATCAAATTCCGGGTATGAGTCGAGAAACCTGCCTATTTTCCTTGAAAGACAAAAATGCCCGGCCCCTGTCCTTGTCTGGCCATGTTGGCTTCGacagcctacctcaccagctgGTCAACAAATCAACATGTCAAGGTTTCTGCTTCAATATCCTCTGTATTGGCGAAACGGGTATTGGCAAATCCACCCTAATGGACACACTGTTCAACACTAACTTTGAGAACTTTGAGTCGTCTCACTTCGAGCCCAAGGTGAAGCTGCGAGCGCAGACCTATGACCTGCAGGAGAGCAACGTGCGACTCAAGCTGACCATCGTCAACACAGTGGGCTTTGGGGACCAGATGAACAAgcaggagagCTACCAGCATGTTGTGGACTACATTGACACCCAGTTCGAGTCGTATCTACAGGAGGAGTTGAAGATCAAGCGGTCCCTCCACAACTACCACGACTCCCGTATCCATGCCTGTCTCTACTTCATCGCCCCTTCAGGACACTCTCTCAAGTCCCTGGACCTGGTCACTATGAAGAAACTGGACAGCAAGgTCAACATCATTCCTGTCATCGCCAAAGCAGACACCATCTCCAAGAGCGAGCTCCACAAGTTTAAGATCAAGATCATGAGCGAGTTGGTCAGTAACGGTGTCCAGATCTACCAGTTCCCTACCGACGACGAGACGGTCTCCAAGATCAACACTGCCATGAATGGTATCCTGCCTTTTGCTGTTGTGGGGAGCTCCGAGGAGGTGAAGATTGGAAATAAAATGGTCAAAGCTCGGCAGTATCCCTGGGGTGTGGTGCAAGTGGAGAACGAGAACCACTGTGACTTTGTGAAGCTGAGGGAGATGCTGATCTGTGTGAACATGGAGGACCTGAGGGAGCAGACCCACACGCGCCACTACGAGCTCTACCGCCGCTGTAAACTGGAGGAGATGGGGTTCACGGACACAAACCCGGAGAGCAAGCCAGTCAGCCTGCAGGAGACCTATGAAGCCAAGCGTCACGAGTTCCTGGGAGACTTGCagcggagagaggaggagatgaggcaGATGTTTGTCCAGAGAGTCAAGGAGAAGGAGACTGAGCTGAAGGAAGCTGAGAGAGAGTTGCAAGGTAAGTTTGAGCAGCTGAAGAGACTGCACTCTGAGGAGAAGAGCAAGCTGGATGAGAAGAGAAGGTCTCTGGAGGACGAGATCAACACCTTCAGCAAGAAGAAAACAGCTGCCGAGCTGCTCCAAGGCCAGTCCTTCAACACTAACGCCAACCTCAAGAAGGACAAAGACCGTAAAAACTCTGGGTTCATGTGAAGAAATAAAATGGACAAAGACCCCCCTCCCATCAGACAGAagagaaataaatacaaaatggagTACATTCACCGATAGTCGTCATTGTTTTGGCTTATTAGTCAAATCACAAATGTTAGTTAAATTCCAGCCAGACTATTGATAATTCTATTTAATACTGGTAACCCTTTTGTATTACTTTACTTTTCACTTCTACAGCTAGAGGGCGCCAAATGATCAAGGTCTGGTTAGGGTTATCATTGAAAATACTGTACTTCACACCAAACAGAAATACAATTTGTTTGATGGTCAACAGTACATTGACATTCAAGATGTATTTAATTGTCCAATCTCGGAATTAGTTGTGTTACCGGGTTGTCTTGAGTGTTCACTTTTAAATGGGATATCAGATAATGTGTGGAAACTTGACTTGAACTTGTTCAACTTTAATTCTGCAGAtagtagaatatatatatttgcatGTCTTTTAAAAAATATGCTGTTCACCACTAGTGTGTATTATATAGCTTGATATTTATTCTATGCATTATTATTGTAGACTCATGGGTTTCTGGATGGATTCCATGCGTAGTAATACCGAACTCTGGTCCAGGACGTTCCTCACATGTTACATTAGCGGAACACGCACCATCAACCAGAGCTACGTTATATCCACGCATGTGTTACATTCCAATCACTGAGGTGTTAttgatttgtatttttaatacttATTGTATGCCTTACTGCCACATACCTTGTATTTTATTCAAATGCTTAAGAATGAAGCAGCTGCTCAATGACCTTTCTGAATTGAACACtacatcaaatggttttgacaCAAGGCACCTCGGgatatattgccaatataccacggctaagggctgtgtccaggcactccacgttgcgtcaTACGCATGAACATTCCtttgccatggtatattggccatataccacacttcTTTGGTCCTTTTTGCGTAGAAATAGTATGTCGTGTGTGGAATGATTGACGTTACAATTGCCAGACATTTTCCCTCTCAAAGGATATCTTGTGTAATTTAAGCGTTTTTTGTACACAGCTTTTTTTCTTAACTCTCAAATATGAACTGACGTTTGTTCTTAGGTGTGAAGGGTTTATATCaccaaaaataaaacatgtttgtcGTAA
>XM_021608838.2
ATGTCCAACGAATTTCCGGAAAAGTGGTTTATACCATTCATTCTATGGGGGTCGCTATATAGTAACTAACAATCCTGCAGTTCAAAATAACTACTCTGTACTCAGAATTTGATGAATACATACCACAAAATCAGAAGATGTAGTACTTAATATATATAGTTTATTTTGTTAAACACAAACATAACGGTCACTCGTGTCTCCCCAACCACGAGAAAAGTGTGAAAGCCTACATTCCTTTCATGGCTACGTAGATAGTCGATTTTTCAACTTTTTTAGTTGAGCCTATTTTCTTTACAGCCTGTTAGTATTTGTAGCTATTTGCTGCTTTATTCCGAGATGACTACGTCGGATGTTGCTCAGGGGCCTTTCCAGGTCTATCCACAATCTGTGTCAGTAAAGAAATGGACAGGTCAGGACAAAAATGCCCGGCCCCTGTCCTTGTCTGGCCATGTTGGCTTCGacagcctacctcaccagctgGTCAACAAATCAACATGTCAAGGTTTCTGCTTCAATATCCTCTGTATTGGCGAAACGGGTATTGGCAAATCCACCCTAATGGACACACTGTTCAACACTAACTTTGAGAACTTTGAGTCGTCTCACTTCGAGCCCAAGGTGAAGCTGCGAGCGCAGACCTATGACCTGCAGGAGAGCAACGTGCGACTCAAGCTGACCATCGTCAACACAGTGGGCTTTGGGGACCAGATGAACAAgcaggagagCTACCAGCATGTTGTGGACTACATTGACACCCAGTTCGAGTCGTATCTACAGGAGGAGTTGAAGATCAAGCGGTCCCTCCACAACTACCACGACTCCCGTATCCATGCCTGTCTCTACTTCATCGCCCCTTCAGGACACTCTCTCAAGTCCCTGGACCTGGTCACTATGAAGAAACTGGACAGCAAGgTCAACATCATTCCTGTCATCGCCAAAGCAGACACCATCTCCAAGAGCGAGCTCCACAAGTTTAAGATCAAGATCATGAGCGAGTTGGTCAGTAACGGTGTCCAGATCTACCAGTTCCCTACCGACGACGAGACGGTCTCCAAGATCAACACTGCCATGAATGGTATCCTGCCTTTTGCTGTTGTGGGGAGCTCCGAGGAGGTGAAGATTGGAAATAAAATGGTCAAAGCTCGGCAGTATCCCTGGGGTGTGGTGCAAGTGGAGAACGAGAACCACTGTGACTTTGTGAAGCTGAGGGAGATGCTGATCTGTGTGAACATGGAGGACCTGAGGGAGCAGACCCACACGCGCCACTACGAGCTCTACCGCCGCTGTAAACTGGAGGAGATGGGGTTCACGGACACAAACCCGGAGAGCAAGCCAGTCAGCCTGCAGGAGACCTATGAAGCCAAGCGTCACGAGTTCCTGGGAGACTTGCagcggagagaggaggagatgaggcaGATGTTTGTCCAGAGAGTCAAGGAGAAGGAGACTGAGCTGAAGGAAGCTGAGAGAGAGTTGCAAGGTAAGTTTGAGCAGCTGAAGAGACTGCACTCTGAGGAGAAGAGCAAGCTGGATGAGAAGAGAAGGTCTCTGGAGGACGAGATCAACACCTTCAGCAAGAAGAAAACAGCTGCCGAGCTGCTCCAAGGCCAGTCCTTCAACACTAACGCCAACCTCAAGAAGGACAAAGACCGTAAAAACTCTGGGTTCATGTGAAGAAATAAAATGGACAAAGACCCCCCTCCCATCAGACAGAagagaaataaatacaaaatggagTACATTCACCGATAGTCGTCATTGTTTTGGCTTATTAGTCAAATCACAAATGTTAGTTAAATTCCAGCCAGACTATTGATAATTCTATTTAATACTGGTAACCCTTTTGTATTACTTTACTTTTCACTTCTACAGCTAGAGGGCGCCAAATGATCAAGGTCTGGTTAGGGTTATCATTGAAAATACTGTACTTCACACCAAACAGAAATACAATTTGTTTGATGGTCAACAGTACATTGACATTCAAGATGTATTTAATTGTCCAATCTCGGAATTAGTTGTGTTACCGGGTTGTCTTGAGTGTTCACTTTTAAATGGGATATCAGATAATGTGTGGAAACTTGACTTGAACTTGTTCAACTTTAATTCTGCAGAtagtagaatatatatatttgcatGTCTTTTAAAAAATATGCTGTTCACCACTAGTGTGTATTATATAGCTTGATATTTATTCTATGCATTATTATTGTAGACTCATGGGTTTCTGGATGGATTCCATGCGTAGTAATACCGAACTCTGGTCCAGGACGTTCCTCACATGTTACATTAGCGGAACACGCACCATCAACCAGAGCTACGTTATATCCACGCATGTGTTACATTCCAATCACTGAGGTGTTAttgatttgtatttttaatacttATTGTATGCCTTACTGCCACATACCTTGTATTTTATTCAAATGCTTAAGAATGAAGCAGCTGCTCAATGACCTTTCTGAATTGAACACtacatcaaatggttttgacaCAAGGCACCTCGGgatatattgccaatataccacggctaagggctgtgtccaggcactccacgttgcgtcaTACGCATGAACATTCCtttgccatggtatattggccatataccacacttcTTTGGTCCTTTTTGCGTAGAAATAGTATGTCGTGTGTGGAATGATTGACGTTACAATTGCCAGACATTTTCCCTCTCAAAGGATATCTTGTGTAATTTAAGCGTTTTTTGTACACAGCTTTTTTTCTTAACTCTCAAATATGAACTGACGTTTGTTCTTAGGTGTGAAGGGTTTATATCaccaaaaataaaacatgtttgtcGTAA
>XM_021608839.2
AACGAATTTCCGGAAAAGTGGTTTATACCATTCATTCTATGGGGGTCGCTATATAGTAACTAACAATCCTGCAGTTCAAAATAACTACTCTGTACTCAGAATTTGATGAATACATACCACAAAATCAGAAGATGTAGTACTTAATATATATAGTTTATTTTGTTAAACACAAACATAACGGTCACTCGTGTCTCCCCAACCACGAGAAAAGTGTGAAAGCCTACATTCCTTTCATGGCTACGTAGATAGTCGATTTTTCAACTTTTTTAGTTGAGCCTATTTTCTTTACAGCCTGTTAGTATTTGTAGCTATTTGCTGCTTTATTCCGAGATGACTACGTCGGATGTTGCTCAGGGGGACAAAAATGCCCGGCCCCTGTCCTTGTCTGGCCATGTTGGCTTCGacagcctacctcaccagctgGTCAACAAATCAACATGTCAAGGTTTCTGCTTCAATATCCTCTGTATTGGCGAAACGGGTATTGGCAAATCCACCCTAATGGACACACTGTTCAACACTAACTTTGAGAACTTTGAGTCGTCTCACTTCGAGCCCAAGGTGAAGCTGCGAGCGCAGACCTATGACCTGCAGGAGAGCAACGTGCGACTCAAGCTGACCATCGTCAACACAGTGGGCTTTGGGGACCAGATGAACAAgcaggagagCTACCAGCATGTTGTGGACTACATTGACACCCAGTTCGAGTCGTATCTACAGGAGGAGTTGAAGATCAAGCGGTCCCTCCACAACTACCACGACTCCCGTATCCATGCCTGTCTCTACTTCATCGCCCCTTCAGGACACTCTCTCAAGTCCCTGGACCTGGTCACTATGAAGAAACTGGACAGCAAGgTCAACATCATTCCTGTCATCGCCAAAGCAGACACCATCTCCAAGAGCGAGCTCCACAAGTTTAAGATCAAGATCATGAGCGAGTTGGTCAGTAACGGTGTCCAGATCTACCAGTTCCCTACCGACGACGAGACGGTCTCCAAGATCAACACTGCCATGAATGGTATCCTGCCTTTTGCTGTTGTGGGGAGCTCCGAGGAGGTGAAGATTGGAAATAAAATGGTCAAAGCTCGGCAGTATCCCTGGGGTGTGGTGCAAGTGGAGAACGAGAACCACTGTGACTTTGTGAAGCTGAGGGAGATGCTGATCTGTGTGAACATGGAGGACCTGAGGGAGCAGACCCACACGCGCCACTACGAGCTCTACCGCCGCTGTAAACTGGAGGAGATGGGGTTCACGGACACAAACCCGGAGAGCAAGCCAGTCAGCCTGCAGGAGACCTATGAAGCCAAGCGTCACGAGTTCCTGGGAGACTTGCagcggagagaggaggagatgaggcaGATGTTTGTCCAGAGAGTCAAGGAGAAGGAGACTGAGCTGAAGGAAGCTGAGAGAGAGTTGCAAGGTAAGTTTGAGCAGCTGAAGAGACTGCACTCTGAGGAGAAGAGCAAGCTGGATGAGAAGAGAAGGTCTCTGGAGGACGAGATCAACACCTTCAGCAAGAAGAAAACAGCTGCCGAGCTGCTCCAAGGCCAGTCCTTCAACACTAACGCCAACCTCAAGAAGGACAAAGACCGTAAAAACTCTGGGTTCATGTGAAGAAATAAAATGGACAAAGACCCCCCTCCCATCAGACAGAagagaaataaatacaaaatggagTACATTCACCGATAGTCGTCATTGTTTTGGCTTATTAGTCAAATCACAAATGTTAGTTAAATTCCAGCCAGACTATTGATAATTCTATTTAATACTGGTAACCCTTTTGTATTACTTTACTTTTCACTTCTACAGCTAGAGGGCGCCAAATGATCAAGGTCTGGTTAGGGTTATCATTGAAAATACTGTACTTCACACCAAACAGAAATACAATTTGTTTGATGGTCAACAGTACATTGACATTCAAGATGTATTTAATTGTCCAATCTCGGAATTAGTTGTGTTACCGGGTTGTCTTGAGTGTTCACTTTTAAATGGGATATCAGATAATGTGTGGAAACTTGACTTGAACTTGTTCAACTTTAATTCTGCAGAtagtagaatatatatatttgcatGTCTTTTAAAAAATATGCTGTTCACCACTAGTGTGTATTATATAGCTTGATATTTATTCTATGCATTATTATTGTAGACTCATGGGTTTCTGGATGGATTCCATGCGTAGTAATACCGAACTCTGGTCCAGGACGTTCCTCACATGTTACATTAGCGGAACACGCACCATCAACCAGAGCTACGTTATATCCACGCATGTGTTACATTCCAATCACTGAGGTGTTAttgatttgtatttttaatacttATTGTATGCCTTACTGCCACATACCTTGTATTTTATTCAAATGCTTAAGAATGAAGCAGCTGCTCAATGACCTTTCTGAATTGAACACtacatcaaatggttttgacaCAAGGCACCTCGGgatatattgccaatataccacggctaagggctgtgtccaggcactccacgttgcgtcaTACGCATGAACATTCCtttgccatggtatattggccatataccacacttcTTTGGTCCTTTTTGCGTAGAAATAGTATGTCGTGTGTGGAATGATTGACGTTACAATTGCCAGACATTTTCCCTCTCAAAGGATATCTTGTGTAATTTAAGCGTTTTTTGTACACAGCTTTTTTTCTTAACTCTCAAATATGAACTGACGTTTGTTCTTAGGTGTGAAGGGTTTATATCaccaaaaataaaacatgtttgtcGTAA

Function

NR:

description
septin-10-like isoform X2

GO: NA

KEGG:

id description
K16940 SEPT10; septin 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983006.1 False 2452 mRNA 0.45 10 22460310 22470522
XM_021608838.2 False 2818 mRNA 0.44 11 22460715 22470522
XM_021608839.2 True 2761 mRNA 0.44 10 22460721 22470522

Neighbor

gene id symbol gene type direction distance location
LOC118936317 LOC106574274 coding upstream 44160 22385870 ~ 22416150 (+)
c7h10orf53 cssa17h10orf53 coding upstream 100078 22356500 ~ 22360232 (+)
mxra5a LOC106574270 coding upstream 113273 22327571 ~ 22347037 (+)
LOC110527508 LOC106574269 coding upstream 148472 22290515 ~ 22312038 (+)
sts sts coding upstream 634285 21812987 ~ 21826025 (+)
LOC110528815 ftcd coding downstream 150481 22621003 ~ 22634558 (+)
LOC110527523 stat1-2 coding downstream 214005 22684527 ~ 22722539 (+)
LOC110527535 LOC106575222 coding downstream 723052 23193574 ~ 23221003 (+)
LOC110527536 LOC106575223 coding downstream 756831 23227353 ~ 23230734 (+)
aox6 LOC106575224 coding downstream 801281 23271803 ~ 23289814 (+)
G586086 LOC106574277 non-coding upstream 2133 22455087 ~ 22458177 (+)
G586111 NA non-coding upstream 7749 22452319 ~ 22452561 (+)
G586105 NA non-coding upstream 14045 22445957 ~ 22446265 (+)
G586104 NA non-coding upstream 16122 22443876 ~ 22444188 (+)
G586148 NA non-coding downstream 55357 22525879 ~ 22526520 (+)
G586229 LOC106575212 non-coding downstream 139439 22609961 ~ 22611689 (+)
G586236 NA non-coding downstream 147421 22617943 ~ 22627272 (+)
G586256 NA non-coding downstream 204952 22675474 ~ 22676432 (+)
G586257 NA non-coding downstream 205975 22676497 ~ 22676707 (+)
G585573 NA other upstream 507041 21953029 ~ 21953269 (+)
G584643 NA other upstream 1377695 21080828 ~ 21082615 (+)
G583605 NA other upstream 2220513 20238911 ~ 20239797 (+)
LOC110528807 LOC106574429 other upstream 2438583 20017855 ~ 20028775 (+)
G586685 NA other downstream 539539 23010061 ~ 23015120 (+)
LOC110527540 LOC106533352 other downstream 1140830 23609520 ~ 23621369 (+)
G587660 NA other downstream 1337200 23807722 ~ 23808000 (+)
G588755 NA other downstream 2433809 24904331 ~ 24905581 (+)

Expression


Co-expression Network