LOC110527522 (LOC106575212)


Basic Information

Item Value
gene id LOC110527522
gene name LOC106575212
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 22609884 ~ 22620248 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608853.2
CTGCAATGTCCAACAAGTGCTTAATATTGAAGTCTGGTCCAAAACAGAAAAAGGCGGAAATAGTCACGAAACTTTCCCAGCGGATCACTTGAGGCACGTCTGAGTTGAAAGGTTGAACGCAGTTGCGCTCTCGCGAGATTCGTTGTCTGTTTTCACAACAGaaacatatttttatattttacgAAACGTTTTTCTAAAATATCCAAGCGCTGCATAGAATGCTGGCTACAGGAGCAGCTGTAACCACGGCTCTGGCCCAAGTGGATAGGGAAAAGATCTACCAGTGGATCAACGAGCTGTCCAGCCCAGAGACCCGCGAGAATGCCCTGCTCGAGCTCAGTAAAAAACGGGAGTCCGTGCCAGATTTGGCTCCAATGCTATGGCACTCCTGTGGGACTATAGCTGCTCTCCTGCAGGAAATAGTCAACATCTACCCCTCAATAAACCCCCCAACCCTCACCGCTCACCAGTCCAACAGAGTATGCAATGCATTAGCACTTCTGCAATGCGTGGCCTCTCATCCAGAGACAAGATCGGCATTTCTGGCAGCACACATTCCTCTATTCCTGTACCCCTTTTTACACACTGTCAGCAAAACACGACCATTTGAGTACCTCCGACTCACCAGCCTAGGAGTCATCGGTGCCTTGGTCAAAACAGATGAGCAGGAAGTGATCAACTTCCTGTTGACGACAGAAATCATTCCCCTGTGCCTTCGCATAATGGAGTCTGGCAGTGAGCTTTCCAAAACGGTAGCAACTTTTATACTACAGAAAATCCTACTTGATGACACAGGGCTGGCATACATTTGCCAAACGTATGAACGCTTCTCCCATGTGGCCATGATACTTGGCAAAATGGTTCTTCAGCTCTCCAAAGAGCCCTCTGCTCGTCTTTTGAAACATGTTGTCCGCTGTTACCTACGCCTGTCAGACAACTCCAGCCCCCACACCAGAGCCCGAGAGGCCCTCCGTCAGTGTCTACCAGACCAGCTTAAAGATACCACGTTTGCCCAGGTCTTGAAAGACGACACCACCACCAAACGCTGGTTGGCACAGCTGGTGAAGAACTTACAGGAAGGCCAAGTCACAGACCCCAGGGGCATCCCTCTGCCCGCACAGTAGCTCTCCTCACTTCTCCAGCAGGGTTGCACAATTATGGTAACTTTCCCATGATTCCCAGGTTTACGAAGACTTTCCTGGAATCCGTGTGGAATAATCAGAAAATCTGGGAATTTTCCAAATGGGATTTATGTCAAACCTGGGTATTTTGccaaagttactggaattttgcaaccctacttacCATGCAGCTGCACTGAGTGATACCCACCAGCAAGGACCCAGCTTCCAGAAATAGGAAAAAGCCACCAGTTTGAATGACAGACGGTCTCATAAAGGGCTGCATATTTTGTGAAGAAAGACTCTATTGAATGAAAGACCTCTACTCAGCCGTTTTCTCACGGTATCTTTCATTCGGATCAAACTGTCTGCCCTATCTCCAGCAGTATATGGATGCGTTTTCACTTGTCCTCAAACTATTAGttctatatttttttctcaaGGAAATTTTGGAGTCTTCACTAAGTGTTCTGAGATTGAAGTGTACGACAGAGTAAAATGTTACACCTTGACGTATGCGATACTGTTTATGTGACATACTTTCTCTTGTGTAATAACATATTACAAAGTAACTGCTTTGTGGTTACATGCATGTGTTATAGATATGCACATCTCAAATGGGCTAGTGAATGAAAATCAACTGAAATCAAGCTGCTCCTGTGTTGTGTATATTACAGAGGTTGCTGCAAGGTAAACGTGTTGGCGTGCTTCAGTGTTAACAGATAAGGGACCCCCCCCCCATTTGAGCCTTGGCCCTGTCTATCTATGTGAAACCTGAGCTGCTGCAGTGTATTATTGATGCTCTGGAACCTGAGTGGAGACTCGGTCAGAAAAAATAAGTTGTTCTCAGTGCTAAACTGTAGAGGTAACTCCGGCCTCAACACAGCCTTGTTCTCTGTCAGTGgcaaagcaggtagcctagtggttagagctttgggccagtaactgaaaggttgctcggtcgaatccctgagctgacaaggtataagtctgtcattctgcccgtgaacaaggcagttaacccactgttccctggtaggctgtcattgtaaataagaatttgttcttaactgacttgcctagttaaataaaggtaaaaaacaacatttgagtaATGCCTCTTCTCTTTAAACTCTCCTCCTCTGACCTGGCTTATTCATAATTTATAAAAACACTGACCTGATGTGCCAAGTGTGAGTGTACTGCATCTTTGATGAGTACGGTGTCTCCCTTTAGGTAATTGTCCCCTGTTCACTTGGGCTCATTGCAGCAGGTTTAGTTGTCTTTATCTTGAACAAATCCCAAATCATTTC
>XM_021608854.2
GTCCAACAAGTGCTTAATATTGAAGTCTGGTCCAAAACAGAAAAAGGCGGAAATAGTCACGAAACTTTCCCAGCGGATCACTTGAGGCACGTCTGAGTTGAAAGGTTGAACGCAGTTGCGCTCTCGCGAGATTCGTTGTCTGTTTTCACAACAGaaacatatttttatattttacgAAACGTTTTTCTAAAATATCCAAGCGCTGCATAGAATGCTGGCTACAGGAGCAGCTGTAACCACGGCTCTGGCCCAAGTGGATAGGGAAAAGATCTACCAGTGGATCAACGAGCTGTCCAGCCCAGAGACCCGCGAGAATGCCCTGCTCGAGCTCAGTAAAAAACGGGAGTCCGTGCCAGATTTGGCTCCAATGCTATGGCACTCCTGTGGGACTATAGCTGCTCTCCTGCAGGAAATAGTCAACATCTACCCCTCAATAAACCCCCCAACCCTCACCGCTCACCAGTCCAACAGAGTATGCAATGCATTAGCACTTCTGCAATGCGTGGCCTCTCATCCAGAGACAAGATCGGCATTTCTGGCAGCACACATTCCTCTATTCCTGTACCCCTTTTTACACACTGTCAGCAAAACACGACCATTTGAGTACCTCCGACTCACCAGCCTAGGAGTCATCGGTGCCTTGGTCAAAACAGATGAGCAGGAAGTGATCAACTTCCTGTTGACGACAGAAATCATTCCCCTGTGCCTTCGCATAATGGAGTCTGGCAGTGAGCTTTCCAAAACGGTAGCAACTTTTATACTACAGAAAATCCTACTTGATGACACAGGGCTGGCATACATTTGCCAAACGTATGAACGCTTCTCCCATGTGGCCATGATACTTGGCAAAATGGTTCTTCAGCTCTCCAAAGAGCCCTCTGCTCGTCTTTTGAAACATGTTGTCCGCTGTTACCTACGCCTGTCAGACAACTCCAGAGCCCGAGAGGCCCTCCGTCAGTGTCTACCAGACCAGCTTAAAGATACCACGTTTGCCCAGGTCTTGAAAGACGACACCACCACCAAACGCTGGTTGGCACAGCTGGTGAAGAACTTACAGGAAGGCCAAGTCACAGACCCCAGGGGCATCCCTCTGCCCGCACAGTAGCTCTCCTCACTTCTCCAGCAGGGTTGCACAATTATGGTAACTTTCCCATGATTCCCAGGTTTACGAAGACTTTCCTGGAATCCGTGTGGAATAATCAGAAAATCTGGGAATTTTCCAAATGGGATTTATGTCAAACCTGGGTATTTTGccaaagttactggaattttgcaaccctacttacCATGCAGCTGCACTGAGTGATACCCACCAGCAAGGACCCAGCTTCCAGAAATAGGAAAAAGCCACCAGTTTGAATGACAGACGGTCTCATAAAGGGCTGCATATTTTGTGAAGAAAGACTCTATTGAATGAAAGACCTCTACTCAGCCGTTTTCTCACGGTATCTTTCATTCGGATCAAACTGTCTGCCCTATCTCCAGCAGTATATGGATGCGTTTTCACTTGTCCTCAAACTATTAGttctatatttttttctcaaGGAAATTTTGGAGTCTTCACTAAGTGTTCTGAGATTGAAGTGTACGACAGAGTAAAATGTTACACCTTGACGTATGCGATACTGTTTATGTGACATACTTTCTCTTGTGTAATAACATATTACAAAGTAACTGCTTTGTGGTTACATGCATGTGTTATAGATATGCACATCTCAAATGGGCTAGTGAATGAAAATCAACTGAAATCAAGCTGCTCCTGTGTTGTGTATATTACAGAGGTTGCTGCAAGGTAAACGTGTTGGCGTGCTTCAGTGTTAACAGATAAGGGACCCCCCCCCCATTTGAGCCTTGGCCCTGTCTATCTATGTGAAACCTGAGCTGCTGCAGTGTATTATTGATGCTCTGGAACCTGAGTGGAGACTCGGTCAGAAAAAATAAGTTGTTCTCAGTGCTAAACTGTAGAGGTAACTCCGGCCTCAACACAGCCTTGTTCTCTGTCAGTGgcaaagcaggtagcctagtggttagagctttgggccagtaactgaaaggttgctcggtcgaatccctgagctgacaaggtataagtctgtcattctgcccgtgaacaaggcagttaacccactgttccctggtaggctgtcattgtaaataagaatttgttcttaactgacttgcctagttaaataaaggtaaaaaacaacatttgagtaATGCCTCTTCTCTTTAAACTCTCCTCCTCTGACCTGGCTTATTCATAATTTATAAAAACACTGACCTGATGTGCCAAGTGTGAGTGTACTGCATCTTTGATGAGTACGGTGTCTCCCTTTAGGTAATTGTCCCCTGTTCACTTGGGCTCATTGCAGCAGGTTTAGTTGTCTTTATCTTGAACAAATCCCAAAT
>TU668953
GCGAGATTCGTTGTCTGTTTTCACAACAGaaacatatttttatattttacgAAACGTTTTTCTAAAATATCCAAGCGCTGCATAGAATGCTGGCTACAGGAGCAGCTGTAACCACGGCTCTGGCCCAAGTGGATAGGGAAAAGATCTACCAGTGGATCAACGAGCTGTCCAGCCCAGAGACCCGCGAGAATGCCCTGCTCGAGCTCAGTAAAAAACGGGAGTCCGTGCCAGATTTGGCTCCAATGCTATGGCACTCCTGTGGGACTATAGCTGCTCTCCTGCAGGTAAGATTGTGGACGACACTAACTGGCCAGTCTCCAGCAAGATGGAGCATGGTTTTCCTCTGTGAGTGTGGCTCTAAACTTGATGATGACCCGCTTCATACTCTTTCATAAATAGGAAATAGTCAACATCTACCCCTCAATAAACCCCCCAACCCTCACCGCTCACCAGTCCAACAGAGTATGCAATGCATTAGCACTTCTGCAATGCGTGGCCTCTCATCCAGAGACAAGATCGGCATTTCTGGCAGCACACATTCCTCTATTCCTGTACCCCTTTTTACACACTGTCAGCAAAACACGACCATTTGAGTACCTCCGACTCACCAGCCTAGGAGTCATCGGTGCCTTGGTCAAAACAGATGAGCAGGAAGTGATCAACTTCCTGTTGACGACAGAAATCATTCCCCTGTGCCTTCGCATAATGGAGTCTGGCAGTGAGCTTTCCAAAACGGTAGCAACTTTTATACTACAGAAAATCCTACTTGATGACACAGGGCTGGCATACATTTGCCAAACGTATGAACGCTTCTCCCATGTGGCCATGATACTTGGCAAAATGGTTCTTCAGCTCTCCAAAGAGCCCTCTGCTCGTCTTTTGAAACATGTTGTCCGCTGTTACCTACGCCTGTCAGACAACTCCAGAGCCCGAGAGGCCCTCCGTCAGTGTCTACCAGACCAGCTTAAAGATACCACGTTTGCCCAGGTCTTGAAAGACGACACCACCACCAAACGCTGGTTGGCACAGCTGGTGAAGAACTTACAGGAAGGCCAAGTCACAGACCCCAGGGGCATCCCTCTGCCCGCACAGTAGCTCTCCTCACTTCTCCAGCAGGGTTGCACAATTATGGTAACTTTCCCATGATTCCCAGGTTTACGAAGACTTTCCTGGAATCCGTGTGGAATAATCAGAAAATCTGGGAATTTTCCAAATGGGATTTATGTCAAACCTGGGTATTTTGccaaagttactggaattttgcaaccctacttacCATGCAGCTGCACTGAGTGATACCCACCAGCAAGGACCCAGCTTCCAGAAATAGGAAAAAGCCACCAGTTTGAATGACAGACGGTCTCATAAAGGGCTGCATATTTTGTGAAGAAAGACTCTATTGAATGAAAGACCTCTACTCAGCCGTTTTCTCACGGTATCTTTCATTCGGATCAAACTGTCTGCCCTATCTCCAGCAGTATATGGATGCGTTTTCACTTGTCCTCAAACTATTAGttctatatttttttctcaaGGAAATTTTGGAGTCTTCACTAAGTGTTCTGAGATTGAAGTGTACGACAGAGTAAAATGTTACACCTTGACGTATGCGATACTGTTTATGTGACATACTTTCTCTTGTGTAATAACATATTACAAAGTAACTGCTTTGTGGTTACATGCATGTGTTATAGATATGCACATCTCAAATGGGCTAGTGAATGAAAATCAACTGAAATCAAGCTGCTCCTGTGTTGTGTATATTACAGAGGTTGCTGCAAGGTAAACGTGTTGGCGTGCTTCAGTGTTAACAGATAAGGGACCCCCCCCCCATTTGAGCCTTGGCCCTGTCTATCTATGTGAAACCTGAGCTGCTGCAGTGTATTATTGATGCTCTGGAACCTGAGTGGAGACTCGGTCAGAAAAAATAAGTTGTTCTCAGTGCTAAACTGTAGAGGTAACTCCGGCCTCAACACAGCCTTGTTCTCTGTCAGTGgcaaagcaggtagcctagtggttagagctttgggccagtaactgaaaggttgctcggtcgaatccctgagctgacaaggtataagtctgtcattctgcccgtgaacaaggcagttaacccactgttccctgg

Function

NR:

description
CCR4-NOT transcription complex subunit 9 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608853.2 False 2434 mRNA 0.46 8 22609884 22620248
XM_021608854.2 False 2409 mRNA 0.45 8 22609890 22620241
TU668953 True 2128 TUCP 0.46 7 22610161 22620116

Neighbor

gene id symbol gene type direction distance location
plcd4a LOC106575211 coding downstream 415 22587846 ~ 22609469 (-)
fam207a cu070 coding downstream 22216 22563281 ~ 22587668 (-)
LOC110527519 LOC106575210 coding downstream 94711 22487885 ~ 22515173 (-)
cep70 LOC106575208 coding downstream 130994 22470835 ~ 22478890 (-)
LOC110527516 LOC106575207 coding downstream 149674 22456193 ~ 22460210 (-)
stat1-2 stat1-2 coding upstream 17842 22638090 ~ 22668102 (-)
mstn2a mstn2a coding upstream 58200 22678448 ~ 22679952 (-)
glsa LOC106575215 coding upstream 105031 22725279 ~ 22746080 (-)
LOC110527525 clcc1 coding upstream 127362 22747610 ~ 22768921 (-)
LOC110527526 LOC106575217 coding upstream 167309 22787557 ~ 22792363 (-)
G586488 NA non-coding downstream 4851 22564482 ~ 22605033 (-)
G586398 NA non-coding downstream 66303 22486284 ~ 22543581 (-)
G586414 LOC106574278 non-coding downstream 144443 22463208 ~ 22470518 (-)
G586411 NA non-coding downstream 155060 22454261 ~ 22454824 (-)
G586405 NA non-coding downstream 163703 22445948 ~ 22446181 (-)
G586522 NA non-coding upstream 751 22620999 ~ 22624553 (-)
G586539 NA non-coding upstream 65317 22685565 ~ 22685824 (-)
G586541 NA non-coding upstream 67451 22687699 ~ 22703875 (-)
G586543 NA non-coding upstream 71433 22691681 ~ 22692118 (-)
G586485 NA non-coding upstream 103622 22723870 ~ 22724435 (-)
LOC110527506 LOC106575199 other downstream 515545 22089741 ~ 22163995 (-)
LOC110527499 LOC106575189 other downstream 1091011 21513832 ~ 21583054 (-)
G585240 LOC106575179 other downstream 1185299 21421454 ~ 21424585 (-)
LOC110527470 LOC103366558 other downstream 1770548 20838415 ~ 20839399 (-)
LOC110527529 ngl1 other upstream 188405 22807676 ~ 22812906 (-)
G586878 NA other upstream 464242 23084490 ~ 23087137 (-)
LOC110527533 s100b other upstream 541646 23161894 ~ 23165209 (-)
G587242 NA other upstream 754764 23375012 ~ 23377701 (-)
G588987 NA other upstream 2208240 24828488 ~ 24828700 (-)

Expression


Co-expression Network