Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110527522 |
| gene name | LOC106575212 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048571.1 |
| NCBI id | CM023225.2 |
| chromosome length | 90918291 |
| location | 22609884 ~ 22620248 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| CCR4-NOT transcription complex subunit 9 isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021608853.2 | False | 2434 | mRNA | 0.46 | 8 | 22609884 | 22620248 |
| XM_021608854.2 | False | 2409 | mRNA | 0.45 | 8 | 22609890 | 22620241 |
| TU668953 | True | 2128 | TUCP | 0.46 | 7 | 22610161 | 22620116 |
22,602,000
22,604,000
22,606,000
22,608,000
22,610,000
22,612,000
22,614,000
22,616,000
22,618,000
22,620,000
22,622,000
22,624,000
22,626,000
NC_048571.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| plcd4a | LOC106575211 | coding | downstream | 415 | 22587846 ~ 22609469 (-) |
| fam207a | cu070 | coding | downstream | 22216 | 22563281 ~ 22587668 (-) |
| LOC110527519 | LOC106575210 | coding | downstream | 94711 | 22487885 ~ 22515173 (-) |
| cep70 | LOC106575208 | coding | downstream | 130994 | 22470835 ~ 22478890 (-) |
| LOC110527516 | LOC106575207 | coding | downstream | 149674 | 22456193 ~ 22460210 (-) |
| stat1-2 | stat1-2 | coding | upstream | 17842 | 22638090 ~ 22668102 (-) |
| mstn2a | mstn2a | coding | upstream | 58200 | 22678448 ~ 22679952 (-) |
| glsa | LOC106575215 | coding | upstream | 105031 | 22725279 ~ 22746080 (-) |
| LOC110527525 | clcc1 | coding | upstream | 127362 | 22747610 ~ 22768921 (-) |
| LOC110527526 | LOC106575217 | coding | upstream | 167309 | 22787557 ~ 22792363 (-) |
| G586488 | NA | non-coding | downstream | 4851 | 22564482 ~ 22605033 (-) |
| G586398 | NA | non-coding | downstream | 66303 | 22486284 ~ 22543581 (-) |
| G586414 | LOC106574278 | non-coding | downstream | 144443 | 22463208 ~ 22470518 (-) |
| G586411 | NA | non-coding | downstream | 155060 | 22454261 ~ 22454824 (-) |
| G586405 | NA | non-coding | downstream | 163703 | 22445948 ~ 22446181 (-) |
| G586522 | NA | non-coding | upstream | 751 | 22620999 ~ 22624553 (-) |
| G586539 | NA | non-coding | upstream | 65317 | 22685565 ~ 22685824 (-) |
| G586541 | NA | non-coding | upstream | 67451 | 22687699 ~ 22703875 (-) |
| G586543 | NA | non-coding | upstream | 71433 | 22691681 ~ 22692118 (-) |
| G586485 | NA | non-coding | upstream | 103622 | 22723870 ~ 22724435 (-) |
| LOC110527506 | LOC106575199 | other | downstream | 515545 | 22089741 ~ 22163995 (-) |
| LOC110527499 | LOC106575189 | other | downstream | 1091011 | 21513832 ~ 21583054 (-) |
| G585240 | LOC106575179 | other | downstream | 1185299 | 21421454 ~ 21424585 (-) |
| LOC110527470 | LOC103366558 | other | downstream | 1770548 | 20838415 ~ 20839399 (-) |
| LOC110527529 | ngl1 | other | upstream | 188405 | 22807676 ~ 22812906 (-) |
| G586878 | NA | other | upstream | 464242 | 23084490 ~ 23087137 (-) |
| LOC110527533 | s100b | other | upstream | 541646 | 23161894 ~ 23165209 (-) |
| G587242 | NA | other | upstream | 754764 | 23375012 ~ 23377701 (-) |
| G588987 | NA | other | upstream | 2208240 | 24828488 ~ 24828700 (-) |
