stat1-2 (stat1-2)


Basic Information

Item Value
gene id stat1-2
gene name stat1-2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 22638090 ~ 22668102 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608237.2
CCGCATGTGGGCGTCATCATCAGATTTACGCAACAGATAGAAGCGTAAGATTCGTTTTAAAAATCGATATATTTGGTTATGCTGTTTGATGTTGTGAATACTTTGCAGCGATCTGCAACAGCAAACCATACTTTATTCAAGTCTTTCGTTCGTGATTTGTTGTCCATAGTCAAAGTAAAAGATGGCCCAGTGGTGCCAGCTGCAACTACTGGAGTCTAAATACCTGGAGCAAGTCGACCAGATCTATGATGACTCCTTCCCCATGGACATCAGACAGTACCTCAGCAAGTGGATTGAGAGCATCGATTGGGAAAATGTGGCTGTTCAGGACTCCTTAGCAACAGTACGTTTCCATGACCTCCTAGCCCAGCTGGATGACCAACACAGCCGCTTCGCACTGGAAAACAACTTCCTGCTACAACACAACATCCGCAAGATCAAGAGAAACCTCCAGGACCGCTTTCAGGAGGACCCCGTTCACATGGCCATGATCATCTCCAGAAACctgaaggaggagcagaggattTTGGCTGCTGCCAAAAGCATAGAGACCgacagagaaaacacacagaccaGCATGGTTCTGGAGAAGCAAAAgctggacaacaaagtcaaagacATGAAAAACAAGGTTCAGGAAGCGGATCAGAATATAAAGTCTCTGGAATACCTTCAAGACGAGCGTGACTTTAAGGAAAATATTCTTAAGAACAGAGAACATGAAATTAACGGGCTGACACCCAAACAGCTGGAACACGAGAAGCTGCAGATTGTAGAGATGTGTTTCAAGCTGAAGTTCAAGAGAGTGGAAGTGGTTGGCCAGTTGGCGGAGGTGCTCAACATGGCCGAGGCGGTCCAATCAGACTTGATCTCAGAGGAGCTGCCTGAGTGGAAGAAGAGGCAGCAGAGCTCCTGTATTGGAGGACCACCCAACGCATGTCTGGACCAACTGCAGAACTGGTTCACAGCGGTGGCAGAAAGCCTGCAGCAGGTGAGGCAGCAGCTGAAGGAGCTCCAGGAACTAGAGCAGAAGTACACATACGACAACGACCCAATCAAACAGCAGAAAGGCTTCCTGGAGGGGCGGGCCCTGGCACTGTTCCGGAACCTCCTAGAACATTCCTTGGTGGTAGAGAGACAGCCCTGTATGCCCACACATCCACAGAGAACTCTGGTGCTGAAGACACAGGTGCAGTTCACTGTCAAGCTCAGatttcttgtGAAGCTCCCGGAATTCAACTATCAACTCAAAGTGAAAGCTTTGTTTGACAAGGACGTTACAGAAAAGAAAGGGTTTCGTAAGTTTAACATATTGGGCACCAACACAAAAGTTATGAATATGGAGGAGTCAAATGGAAGCTTGGCTGCAGAGTTTCGGCACTTGCAACTGAAAGAGCAGAAAGTAGCTGGCAACCGAACAAATGAGGGGCCTCTCATTGTGACAGAGGAGCTGCACTGCATCTGCTTTGAGTCGGAACTCAACCAGTCAGGTTTGGAAATCAAACTAGAGACCATCTCCCTGCCCATCGTGGTCATCTCCAACGTCAGCCAGCTGCCCAGTGGCTGGGCCTCCATCCTGTGGTACAACATGCTGACCAGCGAGCCCAAGAACCTGAAGTTCTTCCTGAGCCCTCCTGTAGCGTCCTGGGGTCAGCTGTCCGAGGTGCTGAGCTGGCAGTTCTCCTCTGTCACCAAGAGGGGACTCAATGAAGAGCAGCTAGGCATGCTGGCCGACAAACTACTGGGCCAGAAAGCACAGAGGAATCCTGAGGGCCTTATCCCCTGGACCAAGTTCTGTAAGAGTCTCAGTGAGAAGAGCTTTCCCTTCTGGCTGTGGATCGAAGCTATCCTGGATCTCATCAAGAGACACCTGCTGTCCCTGTGGAACGATGGTTGCATCCTGGGCTTTGTGagtaaggagagggagaaggccaTGCTGACTGGGAAGTGTCCAGGCACGTTCCTGCTGCGCTTCAGTGAGAGTAGCAGAGACGGAGCCATCACATTCACTTGGGTGGAACACGACCTATACGATAAGCCTGTATTCCATGCAGTGGAGCCCTACACCAAGAAGGAGCTGTCTGCCGTCTCTCTGCCTGACATCATCCGAACCTACAAGGTGATGGCAGCTGAGAACATCCCAGAGAACCCACTCCGTTTCCTCTACCCAGACATCCCCAAAGACAAGTCCTTCGGGAAGTACTACACCAGGGCCTCCGAGGCATCGGAGCCCATGGATGTGGAGGGTTCCAGCGTCACAGGATACATGAAGACAGAACTCATATCAGTGTCCGAAGTTCACCCGTCTAGACTGCAAGACAACATGATGCCCATGTCGCCAGACGTGTTCGGAGAGCTGAAGAGGAGCGTTGCACCAGTGCTCCAGTGTTGGAGTAGTCCTAAGGATATTGATGCTGTGGCGTCTGATCTCAGAGAGTTTTTAGCTGAAGACTTTCAGATGACACCTGACTCGGACTGCAACTGAGCCAACAGACATGTGGGACCAGATCTTTTAGTCCAGGAAATGTTTTACACTGAAGCCTATTTCATTCTCATCCTTTACTCTCCTTGAGCTTCAGTAGTCACGTTTCAGAACAAATACTTTTGTACCGAGTCAGTTTAgaaatatacattatatatatatattacactttACTAAACTGGAAACAATTCATAATTTAGTGATATGTATAAACTTAAAGCACTTAACTACATTGCCTTTAGAAGGTATTCCCAcacgttgttgtgttacagcctgaatataaaattgattaaattgatatTTTTGTGTTACTGGTTTACACACCCTATCCTGTAAtctcaaagtggaattgtttttacaaatgaataaaaaatgaaaaaatgaa
>NM_001124746.1
ATGGCCCAGTGGTGCCAGCTGCAACTACTGGAGTCTAAATACCTGGAGCAAGTCGACCAGATCTATGATGACTCCTTCCCCATGGACATCAGACAGTACCTCAGCAAGTGGATTGAGAGCATCGATTGGGAAAATGTGGCTGTTCAGGACTCCTTAGCAACAGTACGTTTCCATGACCTCCTAGCCCAGCTGGATGACCAACACAGCCGCTTCGCACTGGAAAACAACTTCCTGCTACAACACAACATCCGCAAGATCAAGAGAAACCTCCAGGACCGCTTTCAGGAGGACCCCGTTCACATGGCCATGATCATCTCCAGAAACctgaaggaggagcagaggattTTGGCTGCTGCCAAAAGCATAGAGACCgacagagaaaacacacagaccaGCATGGTTCTGGAGAAGCAAAAgctggacaacaaagtcaaagacATGAAAAACAAGGTTCAGGAAGCGGATCAGAATATAAAGTCTCTGGAATACCTTCAAGACGAGCGTGACTTTAAGGAAAATATTCTTAAGAACAGAGAACATGAAATTAACGGGCTGACACCCAAACAGCTGGAACACGAGAAGCTGCAGATTGTAGAGATGTGTTTCAAGCTGAAGTTCAAGAGAGTGGAAGTGGTTGGCCAGTTGGCGGAGGTGCTCAACATGGCCGAGGCGGTCCAATCAGACTTGATCTCAGAGGAGCTGCCTGAGTGGAAGAAGAGGCAGCAGAGCTCCTGTATTGGAGGACCACCCAACGCATGTCTGGACCAACTGCAGAACTGGTTCACAGCGGTGGCAGAAAGCCTGCAGCAGGTGAGGCAGCAGCTGAAGGAGCTCCAGGAACTAGAGCAGAAGTACACATACGACAACGACCCAATCAAACAGCAGAAAGGCTTCCTGGAGGGGCGGGCCCTGGCACTGTTCCGGAACCTCCTAGAACATTCCTTGGTGGTAGAGAGACAGCCCTGTATGCCCACACATCCACAGAGAACTCTGGTGCTGAAGACACAGGTGCAGTTCACTGTCAAGCTCAGatttcttgtGAAGCTCCCGGAATTCAACTATCAACTCAAAGTGAAAGCTTTGTTTGACAAGGACGTTACAGAAAAGAAAGGGTTTCGTAAGTTTAACATATTGGGCACCAACACAAAAGTTATGAATATGGAGGAGTCAAATGGAAGCTTGGCTGCAGAGTTTCGGCACTTGCAACTGAAAGAGCAGAAAGTAGCTGGCAACCGAACAAATGAGGGGCCTCTCATTGTGACAGAGGAGCTGCACTGCATCTGCTTTGAGTCGGAACTCAACCAGTCAGGTTTGGAAATCAAACTAGAGACCATCTCCCTGCCCATCGTGGTCATCTCCAACGTCAGCCAGCTGCCCAGTGGCTGGGCCTCCATCCTGTGGTACAACATGCTGACCAGCGAGCCCAAGAACCTGAAGTTCTTCCTGAGCCCTCCTGTAGCGTCCTGGGGTCAGCTGTCCGAGGTGCTGAGCTGGCAGTTCTCCTCTGTCACCAAGAGGGGACTCAATGAAGAGCAGCTAGGCATGCTGGCCGACAAACTACTGGGCCAGAAAGCACAGAGGAATCCTGAGGGCCTTATCCCCTGGACCAAGTTCTGTAAGAGTCTCAGTGAGAAGAGCTTTCCCTTCTGGCTGTGGATCGAAGCTATCCTGGATCTCATCAAGAGACACCTGCTGTCCCTGTGGAACGATGGTTGCATCCTGGGCTTTGTGagtaaggagagggagaaggccaTGCTGACTGGGAAGTGTCCAGGCACGTTCCTGCTGCGCTTCAGTGAGAGTAGCAGAGACGGAGCCATCACATTCACTTGGGTGGAACACGACCTATACGATAAGCCTGTATTCCATGCAGTGGAGCCCTACACCAAGAAGGAGCTGTCTGCCGTCTCTCTGCCTGACATCATCCGAACCTACAAGGTGATGGCAGCTGAGAACATCCCAGAGAACCCACTCCGTTTCCTCTACCCAGACATCCCCAAAGACAAGTCCTTCGGGAAGTACTACACCAGGGCCTCCGAGGCATCGGAGCCCATGGATGTGGAGGGTTCCAGCGTCACAGGATACATGAAGACAGAACTCATATCAGTGTCCGAAGTTCACCCGTCTAGACTGCAAGACAACATGATGCCCATGTCGCCAGACGTGTTCGGAGAGCTGAAGAGGAGCGTTGCACCAGTGCTCCAGTGTTGGAGTAGTCCTAAGGATATTGATGCTGTGATGACACCTGACTCGGACTGCAACTGA

Function

NR:

description
signal transducer/activator of transcription

GO: NA

KEGG:

id description
K11220 STAT1; signal transducer and activator of transcription 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608237.2 False 2867 mRNA 0.48 24 22638090 22668102
NM_001124746.1 True 2265 mRNA 0.52 22 22638472 22657391

Neighbor

gene id symbol gene type direction distance location
LOC110527522 LOC106575212 coding downstream 17842 22609884 ~ 22620248 (-)
plcd4a LOC106575211 coding downstream 28621 22587846 ~ 22609469 (-)
fam207a cu070 coding downstream 50422 22563281 ~ 22587668 (-)
LOC110527519 LOC106575210 coding downstream 122917 22487885 ~ 22515173 (-)
cep70 LOC106575208 coding downstream 159200 22470835 ~ 22478890 (-)
mstn2a mstn2a coding upstream 10346 22678448 ~ 22679952 (-)
glsa LOC106575215 coding upstream 57177 22725279 ~ 22746080 (-)
LOC110527525 clcc1 coding upstream 79508 22747610 ~ 22768921 (-)
LOC110527526 LOC106575217 coding upstream 119455 22787557 ~ 22792363 (-)
LOC110527527 LOC106575218 coding upstream 129822 22797924 ~ 22807497 (-)
G586522 NA non-coding downstream 13537 22620999 ~ 22624553 (-)
G586488 NA non-coding downstream 33057 22564482 ~ 22605033 (-)
G586398 NA non-coding downstream 94509 22486284 ~ 22543581 (-)
G586414 LOC106574278 non-coding downstream 172649 22463208 ~ 22470518 (-)
G586411 NA non-coding downstream 183266 22454261 ~ 22454824 (-)
G586539 NA non-coding upstream 17463 22685565 ~ 22685824 (-)
G586541 NA non-coding upstream 19597 22687699 ~ 22703875 (-)
G586543 NA non-coding upstream 23579 22691681 ~ 22692118 (-)
G586485 NA non-coding upstream 55768 22723870 ~ 22724435 (-)
G586570 NA non-coding upstream 105305 22773407 ~ 22773606 (-)
LOC110527506 LOC106575199 other downstream 543751 22089741 ~ 22163995 (-)
LOC110527499 LOC106575189 other downstream 1119217 21513832 ~ 21583054 (-)
G585240 LOC106575179 other downstream 1213505 21421454 ~ 21424585 (-)
LOC110527529 ngl1 other upstream 140551 22807676 ~ 22812906 (-)
G586878 NA other upstream 416388 23084490 ~ 23087137 (-)
LOC110527533 s100b other upstream 493792 23161894 ~ 23165209 (-)
G587242 NA other upstream 706910 23375012 ~ 23377701 (-)
G588987 NA other upstream 2160386 24828488 ~ 24828700 (-)

Expression


Co-expression Network