LOC110527523 (stat1-2)


Basic Information

Item Value
gene id LOC110527523
gene name stat1-2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 22684527 ~ 22722539 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983009.1
TGCCGTTGTTCAACAATTTAGCAAGTTAGACATTTCCTAGTTCCGGCAAGTATGGGGATGCTGCATAAAACCTGGGGAATTCCTGAGGAAAAACTTATTTCCGCATTTCGAGACTGTTGTGTTTGCGATTTGTGTAGCCTACTGGCCGTACATTTTAACAGAGAAGACTGTTCTTTGTGATTTATTccctcatcaaagATGGCCCAGTGGTGCCAGCTGACACTACTGGAGTCTAAATACCAGGAGCAGATCCACCAGCTCTATGATGACTCCTTCCCCATGGACATCAGACAGAACCTCAGCAAGTGGATTGAGAGCATCGACTGGGATAATGTGGCTGTTGACGAATCACTGGCCACTGTCCGCTTCCACGATCTCTTAGCACGTCTTGATGACCAACACAGCCGCTTCGCGCTGGAGAAAAACCTCCTGCGACAACATAACATCCGCAAGTTCAAGGGAAACCTCCAGGACCACTTTCAGGAGGACCCCGTTCACATGGCCATGATCATCTCCAGAAACCTGAAGGAGGAGCGGAGGATTCTGGCTGCTGCCAAAAGCATAGAGACCgacagagaaaacacacagaccaGCATGGTTCTGGAGAAGCAAAAgctggacaacaaagtcaaagacATGAAAAACAAGGTTCAGGAAGCGGATCAGAATATAAAGTCTCTGGAATACCTTCAAGACGAGCGTGACTTTAAGGAAAATATTCTTAAGAACAGAGAACATGAAATGAACGGGCTGACACCCAAACAGCTGGAACACGAGAAGCTGCAGATTGTAGAGATGTGTTTCAAGCTGAAGTTCAAGAGAGTGGAAGTGGTTGGCCAGTTGGCGGAGGTGCTCAACATGGCCGAGGCGATCCAATCAGACTTGATCTCAGAGGAGCTGCCTGAGTGGAAGAAGAGGCAGCAGAGCTCCTGTATTGGAGGACCACCCAACGCATGTCTGGACCAACTGCAGAACTGGTTCACAGCGGTGGCAGAAAGCCTGCAGCAGGTGAGGCAGCAGCTGAAGGAGCTCCAGGAACTAGAGCAGAAGTACACATACGACAACGACCCAATCAAACAGCAGAAAGGCTTCCTGGAGGGGCGGGCCCTGGCACTGTTCCGGAACCTCTTAGAACATTCCTTGGTGGTAGAGAGACAGCCCTGTATGCCCACATATCCACAGAGACCTCTGGTGCTGCAGACAAAGAGGCCCTTCACTGTCAAGCTCAGATTTCTTGTGAAGCTCCAGGAATTCAACTATCAACTCAAAGTGAAAGCTTTGTTTGACAAGTAAGTAAAGGAGTGTGGTGGACGTTACAGAAAATTTAACATATTGGGTACCAACACAAAAGTTATGGAGGAGTCAAATGGAAGCTTGGCTGCAGAGTTTGTCCAGTTGAATCTGCAAGAGCAGAGAGTGACTGGAAGAGGAAAGAAAGAGGGGCCTCTTATTGTGACAGAGGAGCTGCACTGCATCTGCTTTGAGTCGGAACTCCGCCAGTCAGGTCTGGAAATCAAACTAGGGACCATCTCCCTGCCCATCGTGGTCATCTCCAACTGCAGCCAGCTGCCCAGTGGCTGGGCCTCCATCCTGTGGTACAACATGCTGACCAGCGAGCCCCAGGACCTGGAGTTCTTCCTGAACCCTCCGGCAGTGTCCTGGGGTCAGCTATCTGAGGTGCTGAGCTGGCAGTTTTCCTCTGTCACCAAGAGGGGGCTCAATGATGAGCAGCTAGGCATGCTGGCTGACAAACTACTGGGCCAGAAAGCACAGAGGAATCCTGAGGGCCTTATCTCCTGGACCATGTTCGGTGCTGTCAAGAGCCTCAGTGAGAAGAGGTTTCCCTTCTGTCTGTGGATCGAAAACATCCTTGACCTCATCAAGAGACACCTGCTGTCCCTGTGGAACGATGGTTGCATCCTGGGCTTTGTGAGTAAGAGGAGGGCAAAGGCCATGCTGACTGGGAAGTGTCCAGGCACGTTCCTTCTGCGCTTCAGTGAGAGTAGCAGAGACGGAGCCATCACATTCACTTGGGTGGAACACGACCTAAACGATAAGCCTGTATTCCATGCAGTGGAGCCCTACACCAAGGAAGAGCTGTCTGCCGTCTCTCTGCCTGACATCATCCAAACCTACAAGGTGATGGTAGCTGAGAACATCCCAGAGAACCCACTCTGTTTCCTCTACCCAGACATCCCCAAAGACAAGTCCTTCGGGAAGTACTACACCAGGGCCTCTGAGGCATCAGAGCCCATGGATGTGGAGAGTCCCATCGGCACAGGATACGTAAAGACCGATATCATATCAGTGTCAGTTGACCCATCTAGACAGCAAGACGAGATGATCATGTTGCCAGAAGAGCATGAAAGTGGACCAGTGCTCCATTGTTGGAGTGGAAGTCCTAAGAATATTGATACTGCTGTGATGGCCCAGTGGTGCCAGCTGAAACTACTGGAGCCTAAATACCAGGAGCAGATCCACCAGCTCTATGATGACTCCTTCCCCATGGACATCAGACAGTACCTCAGCGAGTGGATTGAGAGCATCGACTGGGATAATGTGGCTGTTGACGAATCACTGGCCACTGTCCGCTTCCACGATCTCTTAGCACGTCTTGATGACCAACACAGCCGCTTCGCGCTGGAGAAAGACCTCCTGCGACAACATAACATCCGCAAGTTCAAGGGAAACCTCCAGGACCACTTTCAGGAGGACCCCGTTCACATGGCCATGATCATCTCCAGAAACCTGAAGGAGGAGCGGAGGATTCTGGCTGCTGCCAAAAGCATAGAGACCgacagagaaaacacacagaccaGCATGGTTCTGGAGAAGCAAAAtctggacaacaaagtcaaagacATGAAAAACAAGGTTCAGGAAGCGGATCAGAATATAAAGTCTCTGGAATACCTTCAAGACGAGCGTGACTTTAAGGAAAATATTCTTAAGAACAGAGAACATGAAATGAACGGGCTGACACCCAAACAGCTGGAACACGAGAAGCTGCAGATTGTAGAGATGTGTTTCAAGCTGAAGTTCAAGAGAGTGGAAGTGGTTGGCCAGTTGGCGGAGGTGCTCAACATGGCCGAGGCGGTCCAGTCACACTTGATCTCAGAGGAGCTGCCTGAGTGGAAGAAGAGGCAGCAGAGCTCCTGTATTGGAGGACCACCCAACGCATGTCTGGACCAACTGCAGAACTGGTTCACAGCGGTGGCAGAAAGCCTGCAGCAGGTGAGGCAGCAGCTGAAGGAGCTCCAGGAACTAGAGCAGAAGTACACATACGACAACGACCCAATCAAACAGCAGAAAGGCTTCCTGGAGGGGCGGGCCCTGGCACTGTTCCGGAACCTCCTAGAACATTCCTTGGTGGTAGAGAGACAGCCCTGTATGCCCACATATCCACAGAGACCTCTGGTGCTGCAGACAAAGAGCCCGTTCACTGTCAAGCTCAGATTTCTTGTGAAGCTCCAGGAATTCAACTATCAACTCAAAGTGAAAGCTTTGTTTGACAAGGATGTTACAGAAAAGAAAGGGTTTCGTAAGTTTAACATATTGGGTACCAACACAAAAGTTATGGAGGAGTCAAATGGAAGCTTGGCTGCAGAGTTTGTCCAGTTGAATCTGCAAGAGCAGAGAGTGACTGGAAGAGGAAAGAAAGAGGGGCCTCTTATTGTGACAGAGGAGCTGCACTGCATCTGCTTTGAGTCGGAACTCCGCCAGTCAGGTCTGGAAATCAAACTAGGGACCATCTCCCTGCCCATCGTGGTCATCTCCAACTGCAGCCAGCTGCCCAGTGGCTGGGCCTCCATCCTGTGGTACAACATGCTGACCAGCGAGCCCCAGGACCTGGAATTCTTCCTGAACCCTCCGGCAGTGTCCTGGGGTCAGCTGTCTGAGGTGCTGAGCTGGCAGTTTTCCTCTGTCACCAAGAGGGGGCTCAATGATGAGCAGCTAGGCATGCTGGCTGACAAACTACTGGGCCAGAAAGCACAGAGGAATCCTGAGGGCCTTATCTCCTGGACCATGTTCGGTGCTGTCAAGAGCCTCAGTGAGAAGAGGTTTCCCTTCTGTCTGTGGATCGAAAACATCCTTGACCTCATCAAGAGACACCTGCTGTCCCTGTGGAACGATGGTTGCATCCTGGGCTTTGTGAGTAAGGAGAGGGCAAAGGCCATGCTGACTGGGAAGTGTCCAGGCACGTTTCTGCTGCGCTTCAGTGAGAGTAGCAGAGACGGAGCCATCACATTCACTTGGGTGGAACACGACCTAAACGATAAGCCTGTATTCCATGCTGTGGAGCCTTATACCAAGAAGAAGCTGTCTGTCATCGCTCTACCTAAAATCATCCGCAACTACAAGGTGATGGCAGCTGGGAACATCCCAGAGAACCCACTCTGCTTCCTCTACCCAGACATCCCCAAAGACGAGGCCTTCGGAAAGTTCTACACCAGGGCCTCAGAGGCATCAGAGCCCATGGATGTGGAGAGTCCCACTGACACTGGATACATACAGAAATATTTCATATCAGTGTCGGAAGTTCACCCATCTAGACTGCAAGACAAGATGATGCTCATGCCGCCAGAAGTGTTTGAAGTGCTGGAAAGTGGGCTAGTGCTCCATTGTTGGAATGGAAGTCCTAAGAATATTTATACTGCTGTGATGACTGCAGTTTGAGAACACACTGGACTTGGACCGCAACTGAGCCGATGGACAGGCaggatgtcacgttctgacctttatttcctttgttttgtcattatttagtatggtcagggtgtgagttggggtgggcagtctgtttgtttttctatgatttggatatttctatgtttcggcctagtatggttctcaatcagaggcaggtgtcattagttgtctctgattgagaaccatacttaggtagcctgggtttcactgtgtgtttgtgggtgattgttcctgtccctgtgtttgcaccagataggactgttttggggttttcacggttcttgtttttgtagtcagttgttcatgtgtacatttacttattaaaagaaccatggaca
>TU668616
CCTGAAGGAGGAGCGGAGGATTCTGGCTGCTGCCAAAAGCATAGAGACCgacagagaaaacacacagaccaGCATGGTTCTGGAGAAGCAAAAgctggacaacaaagtcaaagacATGAAAAACAAGGTTCAGGAAGCGGATCAGAATATAAAGTCTCTGGAATACCTTCAAGACGAGCGTGACTTTAAGGAAAATATTCTTAAGAACAGAGAACATGAAATGAACGGGCTGACACCCAAACAGCTGGAACACGAGAAGCTGCAGATTGTAGAGATGTGTTTCAAGCTGAAGTTCAAGAGAGTGGAAGTGGTTGGCCAGTTGGCGGAGGTGCTCAACATGGCCGAGGCGATCCAATCAGACTTGATCTCAGAGGAGCTGCCTGAGTGGAAGAAGAGGCAGCAGAGCTCCTGTATTGGAGGACCACCCAACGCATGTCTGGACCAACTGCAGAACTGGTTCACAGCGGTGGCAGAAAGCCTGCAGCAGGTGAGGCAGCAGCTGAAGGAGCTCCAGGAACTAGAGCAGAAGTACACATACGACAACGACCCAATCAAACAGCAGAAAGGCTTCCTGGAGGGGCGGGCCCTGGCACTGTTCCGGAA
>TU668622
CTTGCTAGGAAGCGGATCAGAATATAAAGTCTCTGGAATACCTTCAAGACGAGCGTGACTTTAAGGAAAATATTCTTAAGAACAGAGAACATGAAATGAACGGGCTGACACCCAAACAGCTGGAACACGAGAAGCTGCAGATTGTAGAGATGTGTTTCAAGCTGAAGTTCAAGAGAGTGGAAGTGGTTGGCCAGTTGGCGGAGGTGCTCAACATGGCCGAGGCGGTCCAGTCACACTTGATCTCAGAGGAGCTGCCTGAGTGGAAGAAGAGGCAGCAGAGCTCCTGTATTGGAGGACCACCCAACGCATGTCTGGACCAACTGCAGAACTGGTTCACAGCGGTGGCAGAAAGCCTGCAGCAGGTGAGGCAGCAGCTGAAGGAGCTCCAGGAACTAGAGCAGAAGTACACATACGACAACGACCCAATCAAACAGCAGAAAGGCTTCCTGGAGGGGCGGGCCCTGGCACTGTTCCGGAACCTCCTAGAACATTCCTTGGTGGTAGAGAGACAGCCCTGTATGCCCACA

Function

NR:

description
signal transducer/activator of transcription

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983009.1 False 5048 mRNA 0.50 42 22684527 22722539
TU668616 False 603 TUCP 0.51 6 22686489 22687846
TU668622 True 527 TUCP 0.52 5 22701194 22703821

Neighbor

gene id symbol gene type direction distance location
LOC110528815 ftcd coding upstream 49969 22621003 ~ 22634558 (+)
LOC110527515 LOC106575209 coding upstream 214005 22460310 ~ 22470522 (+)
LOC118936317 LOC106574274 coding upstream 268377 22385870 ~ 22416150 (+)
c7h10orf53 cssa17h10orf53 coding upstream 324295 22356500 ~ 22360232 (+)
mxra5a LOC106574270 coding upstream 337490 22327571 ~ 22347037 (+)
LOC110527535 LOC106575222 coding downstream 471035 23193574 ~ 23221003 (+)
LOC110527536 LOC106575223 coding downstream 504814 23227353 ~ 23230734 (+)
aox6 LOC106575224 coding downstream 549264 23271803 ~ 23289814 (+)
LOC110527538 LOC106575225 coding downstream 584277 23306816 ~ 23317470 (+)
LOC110527540 LOC106533352 coding downstream 886981 23609520 ~ 23621369 (+)
G586262 NA non-coding upstream 2295 22681692 ~ 22682232 (+)
G586257 NA non-coding upstream 7820 22676497 ~ 22676707 (+)
G586256 NA non-coding upstream 8095 22675474 ~ 22676432 (+)
G586236 NA non-coding upstream 57255 22617943 ~ 22627272 (+)
G586229 LOC106575212 non-coding upstream 72838 22609961 ~ 22611689 (+)
G586291 NA non-coding downstream 47162 22769701 ~ 22769988 (+)
G586297 NA non-coding downstream 62986 22785525 ~ 22787785 (+)
G586299 NA non-coding downstream 73439 22795978 ~ 22796187 (+)
G586579 ngl1 non-coding downstream 85129 22807668 ~ 22808526 (+)
G586633 NA non-coding downstream 186028 22908567 ~ 22908837 (+)
G585573 NA other upstream 731258 21953029 ~ 21953269 (+)
G584643 NA other upstream 1601912 21080828 ~ 21082615 (+)
G583605 NA other upstream 2444730 20238911 ~ 20239797 (+)
LOC110528807 LOC106574429 other upstream 2662800 20017855 ~ 20028775 (+)
G586685 NA other downstream 287522 23010061 ~ 23015120 (+)
G587660 NA other downstream 1085183 23807722 ~ 23808000 (+)
G588755 NA other downstream 2181792 24904331 ~ 24905581 (+)
G589734 NA other downstream 2881066 25587088 ~ 25608606 (+)

Expression


Co-expression Network