LOC110527529 (ngl1)


Basic Information

Item Value
gene id LOC110527529
gene name ngl1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 22807676 ~ 22812906 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608869.2
TTCACTTAGGTCCCTCGTTATTTCTACTGACACGTCCATTGCCCCTACAGGTCTGGCAGCACGGTGTGTAGAGGTGTATCCTACTACAGAACCATGATATAGAATGTCTAGAGAGGTCATCCCGGCACCTGTGAGCTTCCATGGGACGTTCTCTCAATCCAACTGCTCCAGCTGTTGGTCAAAATCATGTCTTTAATCAATCATGTATCCCACAGCTAGGCTGGAGCAGGTGACAGGTGTCTCCATGACAACCCCTGTTCCATCACACCGCAGTGACAGATGAGACTCTGGGACACTGGGACAGATCAAGGGCAATGTGGAGCACGGTGACGTCACCATCACTGCGGTCTGTGTAATCCGGGGCGGGGATGACAAATTCATCAGTGGTATTCTTGCAGTAATTCACAAGTCTTCTGATGCTGCTGACTACTTATAGAGATATTTACATTGATTTGGCCCCTGTGAGGTTGTCTTCTTGCAGCTGTAGTCTTGTGGCTCTGACAGAGACCATCCTTTGTTTATAGGACTTATAAGGGGGAGGCTTACCGATGCACTCCTTCCAGTACcggccctctctctgttcttACATGTGGACAACAGATAAAACCCTGGATGTCACTGGATGTACAACACTGTTCAAAGGACAAGCAGGAAAAGcaaCAGCCCTGAACAATAGGGCCACCCTTCTGTCTGCGTTCTGAGGGCCATCTGGTTCCCTCGGTACGTTTTCCACCTGCCTCAGACAGGTTGTTGATAGAACAACAGCGGGGTGAATAAAGACAGATCTGCTGCTCCTCACACATGTGTAAGGGGCCAAAATGCAGTACTTCTTTTGTCTCCTACTGTTGATGGCGGTTTACTCCAAGTCTCGCAGCAGCCCGTGCGAGAAAGGCTGCGACTGTCACGAGGAACTGAAACTCACCACGTGCACTAACGCCCTCTTTACCCAACTGCCCAACCACATCCCTCCTTCCACGGAACACCTGGACCTATCTATGAACCTTCTAACCTTTATTCCGAAGAGTTCCTTCCAAATGGAACGCAAACTGAGGGTTCTGCTTATAAAGGACAACAACATCAGCGCTGTAGCCGACGGGGCCTTCACCCAGCTAGAGTTCCTTCAGAAGTTGGACCTGAGTTGTAACAGGATCTCGTCCCTGAGCGAGAGCTTCTCCCTGGGCCTGAATGCTCTGAGAGAGCTGCAGCTGAGCCACAACCACCTGCACACCCTGCACAGCAAGAGCTTCATGCACCTGGATGGCCTACAGAGGCTCAACCTTACTGGCAACGCCATCCATAACATCCAGGTGAGGTCCTTTGGCTCCATGTCCACCTTGCGGCAGCTCCACCTGGAGGGCAACCATCTCGTCTCCCTGAACAATGGGGTGTTCTCCATGCTGAAGTCCCTGGAGGTCCTCAACCTGCAGGGGAACCAGATCAACAAGACCCAAGAGGGTGTCTTCACACCCATGACCTCCCTGGCCTTGCTCAACCTAGCCCACAACCAGATGAGCACCATCTACTTCAAGACCTTCCTAAGCATCCACACCTACAGTACCCATATCCTGTTGGAAGGAAACCCCTGGGACTGCAATTGTGACCTGCAGAAAGTGTTCCACAAGCTTAGAAGTGTTCAAAGGCTGTTCTTGGATGATTACTATAATCTTAGCTGTAATGCTCCGCCAGAACTAGCGAACTACAGGTTGATGGATGTGGATACGGAGCTGTGTATCGCCGAGGTGGTTATTGTGCTGATTATCACGATCACCGTGATGATAACAGTGTTGGGGGCCATCGTCATggcggagaggaagagaaagaagaagaagaggggaaaGCATTGGACGGAGCAGGGCAACTTGTCTGACTCAGATCACTAGGGATTGACTTTTTCTCGGCAACACAAtccttttaatacatttgtacagTAACACGAAGAAAATATCTGAGACAGTTATAAGCGTCATATTTTAAAGGGCTATTGTACAATTTCACCAAGTATTTATTGTACACAAATGCATTAATCAATTACTCAATATGTACACTTTTTGCATTTGTAATAATACCAGAATTTGTAGTGTTCTATTAGATACTTTAAAATACAATATGAACAATACTAACGGTGTGAAAAATAATAAATTCAACGCAATTGAAATGTG
>TU669045
CAATTGTGACCTGCAGAAAGTGTTCCACAAGCTTAGAAGTGTTCAAAGGCTGTTCTTGGATGATTACTATAATCTTAGCTGTAATGCTCCGCCAGAACTAGCGAACTACAGGTTGATGGATGTGGATACGGAGCTGTGTATCGCCGAGGTGGTTATTGTGCTGATTATCACGATCACCGTGATGATAACAGTGTTGGGGGCCATCGTCATggcggagaggaagagaaagaagaagaagaggggaaaGCATTGGACGGAGCAGGGCAACTTGTCTGACTCAGATCACTAGGGATTGACTTTTTCTCGGCAACACAAtccttttaatacatttgtacagTAACACGAAGAAAATATCTGAGACAGTTATAAGCGTCATATTTTAAAGGGCTATTGTACAATTTCACCAAGTATTTA
>TU669046
CACAAGTCTTCTGATGCTGCTGACTACTTATAGAGATATTTACATTGATTTGGCCCCTGTGAGGTTGTCTTCTTGCAGCTGTAGTCTTGTGGCTCTGACAGAGACCATCCTTTGTTTATAGGACTTATAAGGGGGAGGCTTACCGATGCACTCCTTCCAGTACcggccctctctctgttcttACATGTGGACAACAGATAAAACCCTGGATGTCACTGGATGTACAACACTGTTCAAAGGACAAGCAGGAAAAGcaaCAGCCCTGAACAATAGGGCCACCCTTCTGTCTGCGTTCTGAGGGCCATCTGGTTCCCTCGGTACGTTTTCCACCTGCCTCAGACAGGTTGTTGATAGAACAACAGCGGGGTGAATAAAGACAGATCTGCTGCTCCTCACACATGTGTAAGGGGCCAAAATGCAGTACTTCTTTTGTCTCCTACTGTTGATGGCGGTTTACTCCAAGTCTCGCAGCAGCCCGTGCGAGAAAGGCTGCGACTGTCACGAGGAACTGAAACTCACCACGTGCACTAACGCCCTCTTTACCCAACTGCCCAACCACATCCCTCCTTCCACGGAACACCTGGACCTATCTATGAACCTTCTAACCTTTATTCCGAAGAGTTCCTTCCAAATGGAACGCAAACTGAGGGTTCTGCTTATAAAGGACAACAACATCAGCGCTGTAGCCGACGGGGCCTTCACCCAGCTAGAGTTCCTTCAGAAGTTGGACCTGAGTTGTAACAGGATCTCGTCCCTGAGCGAGAGCTTCTCCCTGGGCCTGAATGCTCTGAGAGAGCTGCAGCTGAGCCACAACCACCTGCACACCCTGCACAGCAAGAGCTTCATGCACCTGGATGGCCTACAGAGGCTCAACCTTACTGGCAACGCCATCCATAACATCCAGGTGAG

Function

symbol description
ngl1 Predicted to enable endonuclease activity and poly(A)-specific ribonuclease activity. Predicted to be involved in nuclear-transcribed mRNA poly(A) tail shortening. Located in mitochondrion. Orthologous to human CNOT6L (CCR4-NOT transcription complex subunit 6 like).

NR:

description
insulin-like growth factor-binding protein complex acid labile subunit

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608869.2 False 2159 mRNA 0.48 5 22807676 22812906
TU669045 False 414 lncRNA 0.43 1 22807830 22808243
TU669046 True 909 TUCP 0.51 4 22808653 22812503

Neighbor

gene id symbol gene type direction distance location
LOC110527527 LOC106575218 coding downstream 179 22797924 ~ 22807497 (-)
LOC110527526 LOC106575217 coding downstream 15313 22787557 ~ 22792363 (-)
LOC110527525 clcc1 coding downstream 38755 22747610 ~ 22768921 (-)
glsa LOC106575215 coding downstream 61596 22725279 ~ 22746080 (-)
mstn2a mstn2a coding downstream 127724 22678448 ~ 22679952 (-)
ahr1b ahr1b coding upstream 19393 22832299 ~ 22908138 (-)
ahr2 ahr2g coding upstream 102876 22915782 ~ 23035974 (-)
LOC118965270 NA coding upstream 235125 23048031 ~ 23053093 (-)
LOC118965271 NA coding upstream 253083 23065989 ~ 23098610 (-)
LOC110527532 LOC106575221 coding upstream 293736 23106642 ~ 23133644 (-)
G586577 NA non-coding downstream 12750 22794682 ~ 22794926 (-)
G586574 NA non-coding downstream 27413 22780042 ~ 22780263 (-)
G586570 NA non-coding downstream 34070 22773407 ~ 22773606 (-)
G586485 NA non-coding downstream 83241 22723870 ~ 22724435 (-)
G586590 NA non-coding upstream 6637 22819543 ~ 22819782 (-)
G586844 NA non-coding upstream 140436 22953342 ~ 22958668 (-)
G586843 NA non-coding upstream 146756 22959662 ~ 22987542 (-)
G586845 NA non-coding upstream 179516 22992422 ~ 22994686 (-)
G586872 NA non-coding upstream 249273 23062179 ~ 23062671 (-)
LOC110527522 LOC106575212 other downstream 187560 22609884 ~ 22620248 (-)
G586414 LOC106574278 other downstream 337158 22463208 ~ 22470518 (-)
LOC110527506 LOC106575199 other downstream 713337 22089741 ~ 22163995 (-)
LOC110527499 LOC106575189 other downstream 1288803 21513832 ~ 21583054 (-)
G585240 LOC106575179 other downstream 1383091 21421454 ~ 21424585 (-)
G586878 NA other upstream 271584 23084490 ~ 23087137 (-)
LOC110527533 s100b other upstream 348988 23161894 ~ 23165209 (-)
G587242 NA other upstream 562106 23375012 ~ 23377701 (-)
G588987 NA other upstream 2015582 24828488 ~ 24828700 (-)
G589093 NA other upstream 2158707 24971613 ~ 24979107 (-)
LOC110527529 ngl1 other upstream 410 22807676 ~ 22812906 (-)

Expression


Co-expression Network