LOC118965271


Basic Information

Item Value
gene id LOC118965271
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 23065989 ~ 23098610 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983016.1
TTGTCTACCAGGGGAATTAGCAGATCAGCTCACAGAGCAACAAATGTGGCCCACACCCattcaagggagagagagaaaaaaaacacattgcgCATGGGTCTCCAACTTAACACTCCTGTCAACTTAACAGCATAACAGTTGCACAAATTCATCACGGAAAGGGAGTTGAAGGAAAACGTATTGCTTGACTTGGACTTGTATTGACTGTTCATCATGGAGGCACCAACAACAGCAGGTACAATAAGCCCCTCGTCATCGGGAGAGGCCTTCAGCCACATGGTCAGTCACATTTTCGGAGAACTCTTCACACAGGCCCCCGTAGCTGAAGTTCTGACAACAACTTCTGCACATATGACTGAAACAATCTCAGACGCTTCTGTGGGAGTTCTGACAACAACTTCTGTACATATGACTGAAACAACCTCAGATGCTTTTTTAGAAGTTCTGACAACAACTTCTGCACATATGACTGAAACAACCTCAGATGCTTTTATAGTGGGAGCCGCCGCCGTAAAAGGTGTATCCTTTGAAGTCCTTTTCGCAGGAGgaGTCATTGTGGTGGTACTGGTGGTGGTACTGGTGCTGGTACTGTGCCACAAGGGCAAGCATAAGGGCACTTACCACACCAACGAGGCCGAGTGTGGTGATTCTGTCGACACGTATGGCGTTGCCTCTTAAAGCGAACTAGAGATTTTGATTGAGGAAGAATAGAAAGAAGTACACTTCATTTGAAACAGGACTTTTTCCGATTCTAAACCGGGGCCAGTTGCCAAATATTTTCTACGGAATTGGTAATGCCTATGATGGTCATCTAATTTCAAGGCAACATTTATATGGGGCATACGACCAtctcagctctgcagattttgccaCGAAGAGACAGAATCGTTAGATCACTTATTTTTGTATTGcccatatatacactatatatacaaaattatgtggacacccattagtggatttggctatttcagccacattacagccttatttccctcatcaatcaatATACAGAAGCACTTTAATAAACAATTAATATTCATTACATGTGACTAACTTCAAGCTTACAATTAGTACAGTAGTTAAACCAATATTAGATTGTTGAGGTTTTCGAAAAGATGTAAAAACTCGAGAAATTTTACAATCCTTTTtgttttcctttaaaaaaaaaatgtatactcaAAAGATAGTACCTTGTTTGAATTTCTATTATGAGGGTGTTGAGTGAGCTTAATGTATAATAATGTATAGCATTGCTGAATGTAATATCTGTTTTCAATTTTTTTCTAAATTGACGTCCAGTAGTAATCTGAGCTTGTAAAATTAAATCAAGGCACAGGCATCTTTcctaacgcctgaaggtaccaataACTGAGAAAAGGAAATGCTTCGGCGAGGACCATAGGAACACAAAAAATTACTTTCATGAAACTTGACAGACATTTCACCCATGACAATACTGGGAACAAAACAGTCAAAAAAAATGTCAATTCTCCTTCTTCTCATGCAAGTCTCTGTAACTAATATATTACCATGTGATTAAAGAGAAGCAACCTTG
>XM_036983018.1
TTGTCTACCAGGGGAATTAGCAGATCAGCTCACAGAGCAACAAATGTGGCCCACACCCattcaagggagagagagaaaaaaaacacattgcgCATGGGTCTCCAACTTAACACTCCTGTCAACTTAACAGCATAACAGTTGCACAAATTCATCACGGAAAGGGAGTTGAAGGAAAACGTATTGCTTGACTTGGACTTGTATTGACTGTTCATCATGGAGGCACCAACAACAGCAGGTACAATAAGCCCCTCGTCATCGGGAGAGGCCTTCAGCCACATGGTCAGTCACATTTTCGGAGAACTCTTCACACAGGCCCCCGTAGCTGAAGTTCTGACAACAACTTCTGCACATATGACTGAAACAATCTCAGACGCTTCTGTGGAAGTTCTGACAACAACTTCTGCACATATGACTGAAACAACCTCAGATGCTTTTATAGTGGGAGCCGCCGCCGTAAAAGGTGTATCCTTTGAAGTCCTTTTCGCAGGAGgaGTCATTGTGGTGGTACTGGTGGTGGTACTGGTGCTGGTACTGTGCCACAAGGGCAAGCATAAGGGCACTTACCACACCAACGAGGCCGAGTGTGGTGATTCTGTCGACACGTATGGCGTTGCCTCTTAAAGCGAACTAGAGATTTTGATTGAGGAAGAATAGAAAGAAGTACACTTCATTTGAAACAGGACTTTTTCCGATTCTAAACCGGGGCCAGTTGCCAAATATTTTCTACGGAATTGGTAATGCCTATGATGGTCATCTAATTTCAAGGCAACATTTATATGGGGCATACGACCAtctcagctctgcagattttgccaCGAAGAGACAGAATCGTTAGATCACTTATTTTTGTATTGcccatatatacactatatatacaaaattatgtggacacccattagtggatttggctatttcagccacattacagccttatttccctcatcaatcaatATACAGAAGCACTTTAATAAACAATTAATATTCATTACATGTGACTAACTTCAAGCTTACAATTAGTACAGTAGTTAAACCAATATTAGATTGTTGAGGTTTTCGAAAAGATGTAAAAACTCGAGAAATTTTACAATCCTTTTtgttttcctttaaaaaaaaaatgtatactcaAAAGATAGTACCTTGTTTGAATTTCTATTATGAGGGTGTTGAGTGAGCTTAATGTATAATAATGTATAGCATTGCTGAATGTAATATCTGTTTTCAATTTTTTTCTAAATTGACGTCCAGTAGTAATCTGAGCTTGTAAAATTAAATCAAGGCACAGGCATCTTTcctaacgcctgaaggtaccaataACTGAGAAAAGGAAATGCTTCGGCGAGGACCATAGGAACACAAAAAATTACTTTCATGAAACTTGACAGACATTTCACCCATGACAATACTGGGAACAAAACAGTCAAAAAAAATGTCAATTCTCCTTCTTCTCATGCAAGTCTCTGTAACTAATATATTACCATGTGATTAAAGAGAAGCAACCTTG
>XM_036983019.1
TTGTCTACCAGGGGAATTAGCAGATCAGCTCACAGAGCAACAAATGTGGCCCACACCCattcaagggagagagagaaaaaaaacacattgcgCATGGGTCTCCAACTTAACACTCCTGTCAACTTAACAGCATAACAGTTGCACAAATTCATCACGGAAAGGGAGTTGAAGGAAAACGTATTGCTTGACTTGGACTTGTATTGACTGTTCATCATGGAGGCACCAACAACAGCAGGTACAATAAGCCCCTCGTCATCGGGAGAGGCCTTCAGCCACATGGTCAGTCACATTTTCGGAGAACTCTTCACACAGGCCCCCGTAGCTGAAGTTCTGACAACAACTTCTGCACATATGACTGAAACAATCTCAGACGCTTCTGTGGGAGTTCTGACAACAACTTCTGTACATATGACTGAAACAACCTCAGATGCTTTTTTAGTGGGAGCCGCCGCCGTAAAAGGTGTATCCTTTGAAGTCCTTTTCGCAGGAGgaGTCATTGTGGTGGTACTGGTGGTGGTACTGGTGCTGGTACTGTGCCACAAGGGCAAGCATAAGGGCACTTACCACACCAACGAGGCCGAGTGTGGTGATTCTGTCGACACGTATGGCGTTGCCTCTTAAAGCGAACTAGAGATTTTGATTGAGGAAGAATAGAAAGAAGTACACTTCATTTGAAACAGGACTTTTTCCGATTCTAAACCGGGGCCAGTTGCCAAATATTTTCTACGGAATTGGTAATGCCTATGATGGTCATCTAATTTCAAGGCAACATTTATATGGGGCATACGACCAtctcagctctgcagattttgccaCGAAGAGACAGAATCGTTAGATCACTTATTTTTGTATTGcccatatatacactatatatacaaaattatgtggacacccattagtggatttggctatttcagccacattacagccttatttccctcatcaatcaatATACAGAAGCACTTTAATAAACAATTAATATTCATTACATGTGACTAACTTCAAGCTTACAATTAGTACAGTAGTTAAACCAATATTAGATTGTTGAGGTTTTCGAAAAGATGTAAAAACTCGAGAAATTTTACAATCCTTTTtgttttcctttaaaaaaaaaatgtatactcaAAAGATAGTACCTTGTTTGAATTTCTATTATGAGGGTGTTGAGTGAGCTTAATGTATAATAATGTATAGCATTGCTGAATGTAATATCTGTTTTCAATTTTTTTCTAAATTGACGTCCAGTAGTAATCTGAGCTTGTAAAATTAAATCAAGGCACAGGCATCTTTcctaacgcctgaaggtaccaataACTGAGAAAAGGAAATGCTTCGGCGAGGACCATAGGAACACAAAAAATTACTTTCATGAAACTTGACAGACATTTCACCCATGACAATACTGGGAACAAAACAGTCAAAAAAAATGTCAATTCTCCTTCTTCTCATGCAAGTCTCTGTAACTAATATATTACCATGTGATTAAAGAGAAGCAACCTTG
>XM_036983020.1
TTGTCTACCAGGGGAATTAGCAGATCAGCTCACAGAGCAACAAATGTGGCCCACACCCattcaagggagagagagaaaaaaaacacattgcgCATGGGTCTCCAACTTAACACTCCTGTCAACTTAACAGCATAACAGTTGCACAAATTCATCACGGAAAGGGAGTTGAAGGAAAACGTATTGCTTGACTTGGACTTGTATTGACTGTTCATCATGGAGGCACCAACAACAGCAGGTACAATAAGCCCCTCGTCATCGGGAGAGGCCTTCAGCCACATGGTCAGTCACATTTTCGGAGAACTCTTCACACAGGCCCCCGTAGCTGAAGTTCTGACAACAACTTCTGCACATATGACTGAAACAATCTCAGACGCTTCTGTGGTGGGAGCCGCCGCCGTAAAAGGTGTATCCTTTGAAGTCCTTTTCGCAGGAGgaGTCATTGTGGTGGTACTGGTGGTGGTACTGGTGCTGGTACTGTGCCACAAGGGCAAGCATAAGGGCACTTACCACACCAACGAGGCCGAGTGTGGTGATTCTGTCGACACGTATGGCGTTGCCTCTTAAAGCGAACTAGAGATTTTGATTGAGGAAGAATAGAAAGAAGTACACTTCATTTGAAACAGGACTTTTTCCGATTCTAAACCGGGGCCAGTTGCCAAATATTTTCTACGGAATTGGTAATGCCTATGATGGTCATCTAATTTCAAGGCAACATTTATATGGGGCATACGACCAtctcagctctgcagattttgccaCGAAGAGACAGAATCGTTAGATCACTTATTTTTGTATTGcccatatatacactatatatacaaaattatgtggacacccattagtggatttggctatttcagccacattacagccttatttccctcatcaatcaatATACAGAAGCACTTTAATAAACAATTAATATTCATTACATGTGACTAACTTCAAGCTTACAATTAGTACAGTAGTTAAACCAATATTAGATTGTTGAGGTTTTCGAAAAGATGTAAAAACTCGAGAAATTTTACAATCCTTTTtgttttcctttaaaaaaaaaatgtatactcaAAAGATAGTACCTTGTTTGAATTTCTATTATGAGGGTGTTGAGTGAGCTTAATGTATAATAATGTATAGCATTGCTGAATGTAATATCTGTTTTCAATTTTTTTCTAAATTGACGTCCAGTAGTAATCTGAGCTTGTAAAATTAAATCAAGGCACAGGCATCTTTcctaacgcctgaaggtaccaataACTGAGAAAAGGAAATGCTTCGGCGAGGACCATAGGAACACAAAAAATTACTTTCATGAAACTTGACAGACATTTCACCCATGACAATACTGGGAACAAAACAGTCAAAAAAAATGTCAATTCTCCTTCTTCTCATGCAAGTCTCTGTAACTAATATATTACCATGTGATTAAAGAGAAGCAACCTTG
>XM_036983017.1
CTTGTCTACCAGGGGAATTAGCAGATCAGCTCACAGAGCAACAAATGTGGCCCACACCCattcaagggagagagagaaaaaaaacacattgcgCATGGGTCTCCAACTTAACACTCCTGTCAACTTAACAGCATAACAGTTGCACAAATTCATCACGGAAAGGGAGTTGAAGGAAAACGTATTGCTTGACTTGGACTTGTATTGACTGTTCATCATGGAGGCACCAACAACAGCAGGTACAATAAGCCCCTCGTCATCGGGAGAGGCCTTCAGCCACATGGTCAGTCACATTTTCGGAGAACTCTTCACACAGGCCCCCGTAGCTGAAGTTCTGACAACAACTTCTGCACATATGACTGAAACAATCTCAGACGCTTCTGTGGGAGTTCTGACAACAACTTCTGTACATATGACTGAAACAACCTCAGATGCTTTTTTAGAAGTTCTGACAACAACTTCTGCACATATGACTGAAACAACCTCAGATGCTTTTATAGTGGGAGCCGCCGCCGTAAAAGGTGTATCCTTTGAAGTCCTTTTCGCAGGAGgaGTCATTGTGGTGGTACTGGTGGTGGTACTGGTGCTGGTACTGTGCCACAAGGGCAAGCATAAGGGCACTTACCACACCAACGAGGCCGATTAAAGCGAACTAGAGATTTTGATTGAGGAAGAATAGAAAGAAGTACACTTCATTTGAAACAGGACTTTTTCCGATTCTAAACCGGGGCCAGTTGCCAAATATTTTCTACGGAATTGGTAATGCCTATGATGGTCATCTAATTTCAAGGCAACATTTATATGGGGCATACGACCAtctcagctctgcagattttgccaCGAAGAGACAGAATCGTTAGATCACTTATTTTTGTATTGcccatatatacactatatatacaaaattatgtggacacccattagtggatttggctatttcagccacattacagccttatttccctcatcaatcaatATACAGAAGCACTTTAATAAACAATTAATATTCATTACATGTGACTAACTTCAAGCTTACAATTAGTACAGTAGTTAAACCAATATTAGATTGTTGAGGTTTTCGAAAAGATGTAAAAACTCGAGAAATTTTACAATCCTTTTtgttttcctttaaaaaaaaaatgtatactcaAAAGATAGTACCTTGTTTGAATTTCTATTATGAGGGTGTTGAGTGAGCTTAATGTATAATAATGTATAGCATTGCTGAATGTAATATCTGTTTTCAATTTTTTTCTAAATTGACGTCCAGTAGTAATCTGAGCTTGTAAAATTAAATCAAGGCACAGGCATCTTTcctaacgcctgaaggtaccaataACTGAGAAAAGGAAATGCTTCGGCGAGGACCATAGGAACACAAAAAATTACTTTCATGAAACTTGACAGACATTTCACCCATGACAATACTGGGAACAAAACAGTCAAAAAAAATGTCAATTCTCCTTCTTCTCATGCAAGTCTCTGTAACTAATATATTACCATGTGATTAAAGAGAAGCAACCTTG

Function

NR:

description
cell adhesion molecule 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983016.1 False 1558 mRNA 0.40 7 23065989 23098609
XM_036983018.1 False 1501 mRNA 0.40 6 23065989 23098609
XM_036983019.1 False 1501 mRNA 0.40 6 23065989 23098609
XM_036983020.1 False 1444 mRNA 0.40 5 23065989 23098609
XM_036983017.1 True 1523 mRNA 0.39 8 23065989 23098610

Neighbor

gene id symbol gene type direction distance location
LOC118965270 NA coding downstream 12896 23048031 ~ 23053093 (-)
ahr2 ahr2g coding downstream 30015 22915782 ~ 23035974 (-)
ahr1b ahr1b coding downstream 157851 22832299 ~ 22908138 (-)
LOC110527529 ngl1 coding downstream 253083 22807676 ~ 22812906 (-)
LOC110527527 LOC106575218 coding downstream 258492 22797924 ~ 22807497 (-)
LOC110527532 LOC106575221 coding upstream 8032 23106642 ~ 23133644 (-)
LOC110527533 s100b coding upstream 63980 23161894 ~ 23165209 (-)
LOC110527539 LOC106575227 coding upstream 218979 23317589 ~ 23320557 (-)
LOC118965272 NA coding upstream 228436 23327046 ~ 23329616 (-)
LOC110528816 LOC106575230 coding upstream 294512 23392907 ~ 23552928 (-)
G586872 NA non-coding downstream 3318 23062179 ~ 23062671 (-)
G586845 NA non-coding downstream 71303 22992422 ~ 22994686 (-)
G586843 NA non-coding downstream 78447 22959662 ~ 22987542 (-)
G586844 NA non-coding downstream 107321 22953342 ~ 22958668 (-)
G586590 NA non-coding downstream 246207 22819543 ~ 22819782 (-)
G586890 NA non-coding upstream 5567 23104177 ~ 23104473 (-)
G586908 NA non-coding upstream 46371 23144981 ~ 23145245 (-)
G587004 NA non-coding upstream 143720 23242330 ~ 23242569 (-)
G587174 NA non-coding upstream 151347 23249957 ~ 23250214 (-)
G587186 NA non-coding upstream 167982 23266592 ~ 23266797 (-)
LOC110527522 LOC106575212 other downstream 445873 22609884 ~ 22620248 (-)
G586414 LOC106574278 other downstream 595471 22463208 ~ 22470518 (-)
LOC110527506 LOC106575199 other downstream 971650 22089741 ~ 22163995 (-)
LOC110527499 LOC106575189 other downstream 1547116 21513832 ~ 21583054 (-)
G587242 NA other upstream 276402 23375012 ~ 23377701 (-)
G588987 NA other upstream 1729878 24828488 ~ 24828700 (-)
G589093 NA other upstream 1873003 24971613 ~ 24979107 (-)
G589529 NA other upstream 2102796 25201406 ~ 25278874 (-)

Expression


Co-expression Network