LOC110527532 (LOC106575221)


Basic Information

Item Value
gene id LOC110527532
gene name LOC106575221
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 23106642 ~ 23133644 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608875.2
TGGAGTCGCGACGATGCTTGTGCGTCGGAACGCACCAGAAGTAACCACCAATCCTTGATGAAGAACGTAAAGCTATTGTCCTTATAAATAGCGACTTTTGTTGCCTTGGAAACAATGTCTTTAAGATTATATTTGTGAGAGGGTCTCTACGATTTAATCACATGGCTTTTACAAAAATATTTCGGGGGTAGAGCTGGAAAGCCACAGGAACATTCTGAGTCCTGGGGCACACACCGGATCTATATTCTGGAGACCACGGGCAGATGCTGTACCGCAACTTGGATATTATGCCTGCTGTGTTGGCGAACATGAGCTCGAGAAGCGCCTCGTGGTTCTATATATTCAGTTACTTTGTTTTAAGTATTTTTGGATCCATACATGCAGCAAATAATTGCAATGGACCATTGCTATCCGTTTTGCCTGAGTCCTCCTTCGAAAGCTCTTCAACATCCTCCAGCAGTCAGCTGCCTCACTCTGCTAAGCTGAACAGAAGAGAGGGCTGGGCCCCGGAGCGGTCAGACAGACAGCCGTGGCTCCAGCTGGACCTCAGGCAGAAGATGGAGGTCACGGCCATCGCTACACAGGGCCGCTCAGGGAGCTCTGACTGGGTGACCAGCTTTATGCTGCTGTTCAGTGACTCTGGCCTTGCTTGGAAGCAGTACGGACAGAGTGAAGACACTGGGACGTACACAGGGAACACTAACTCAGAGGGTGTGGTCCAACACAAGCTGGTCCATTCCATCGCAGCGAGGTTCCTACGCTTCGTGCCACTGGACTGGAGCACTACAGGATGGATCGGCCTCAGAGTGGAGGTCTATGGCTGTGTATACAAGTCAGATGTGGCAGACTTCAACGGCAGGAGTGCTCTGTTGTACCGGTTTAACCAGAAGTCCCAGAGAACGGTGAAAGATGTGATCTCCCTCAGGTTTAAGAGCTACGGGGCAGACGGGGTGCTGGTGCACGGGGAGGGACACAGAGGAGACTACCTGACATTGGAGCTGCACCACGCGACCCTGGCTCTGCACCTCAACCTGGacGACGCTAAGCTCTACCCCAGCAGTGCGAATGTGTCAGTGTTCCTGGGCTGTCTCCTGGATGACCAGCTCTGGCACTACGTCCTAGTTAAACGCTCCAACAAGCAGGTCAACCTCACCGTGGACGGGCACACACGTCACCTCAGCACCACAGGTGTGGAAGACTCACTGGAGGTGGACTATGAGCTCAGCTTCGGAGGGATTCCTATACCCGGTAAACCAGGAAGCTTCCTTAGGAAGAACTTCCATGGCTGCATAGAGAACCTCTACTATAATGGAGTCAACATTATCAACCTGGCCAAGCGACGCAAGCTCCAGATCCACAGTGTGGGCAACGTGACCTTCTCGTGCTCTGAGCCCCAGCCCCAGATGGTGTCCACCACCTTCCTGTCCTCTAGCAGTAGCTACCTGTCTCTACCCCTGGAGCCTCTTGGGGTGTGGGGGCTGGACGTACACTTCCACTTCAGGACCTGGAACCAGGAAGGACTTCTGTTCTCCACCGGCCTGGCACAGGGATCACAGCACCTGGTTTTGCAAATCAGCAGAGGCCAACTGCACCTAATGGTCCATGGAGCTGCTGAGCAGAAAACAAAAATTTCCATAGAAGGCAGTGTAACTGATGGACTGTGGCATTCTGTTAGTCTGAGCTACAGAGATTTGATGGTTTCCCTGGTCTTGGACAATGAGCCAACATCTACCATGGACGTACAAAGTCATGCAGACTCAGGCAATAGTGTATTTTTTGGAGGTTGTCCCCAATACAGTGATGGCTGTAAGAACCCTACTGTGGCCTTCCAGGGGTGCATGCGTCAGATCCTCCTAAACAACCAACTTATGGATCTACCCCGTGTGCAGCAAGGGCTTTTGGGTAATTACAGCAAGCTTCAGTTCGACATCTGTGGGATCCGCAACAGATGTCTGCCTAATTTTTGTGAGCATGACGGACGATGCACCCAATCATGGGATACTTTCTACTGTGATTGCTCAGGGACAGGCTACACTGGAGAAACCTGTCACAACTCTATTTATGAAGCGTCGTGTGAGGCACACCGACAAATGGGGAGTACGTCTGGCTACTTCTACATTGATCCAGATGGGAGTGGTCCTCTAAAGGCAACACTGGTCTACTGCAACATGACTGAGGACAAGGTATGGACAGTGGTGGGCCACAACAACAGTGGGTTTGTGAATGTGACTGGAGCCACAACAAAGAAGCCGTATGTGATGCGGTTCAACTACACAGCCTCCCTGGAGCAGCTCCGCACTCTGATCGGACGGTCTGAGCACTGTCAACAGGAAGTGGTCTACAGCTGCAGGAAGTCCCGTCTCTTCAATACTTGGGACGGGAGGCCCCTGTCGTGGTGGCTGGACGGGAGTGGAGAGAAACAGACCTACTGGGGAGGCTCTGTACCTGGGGTCCAACAGTGCTCCTGCAGCCTGGAGGAGAACTGCATCGACATGAACTACTTCTGCAACTGTGATGCAGACACTCACTTGTGGGTAAACGACACAGGATTGCTGTCCTACAAAGATCACCTACCACTGACTGAGATTGTAATAGGAGACACCAACAGGACAGGCTCAGCGGCTGTATACAGAGTCGGCTCCCTTCACTGCAACGGTGACAGGTTCCTGTGGAATTCAGCCTCTTTCTATCCTGGGTCGTCGTCCCTCCACTTCCCTAAGTTCCAGGCTGAGCTCAGTGCGGACATCTCCCTGTATTTCAAGACCACAGCTTCCTCTGGTGTTCTCCTGGAGAACCTGGGGACCGCTGACTTCATCACCCTGAAGTTGACCACTCCCTCAGCTATAACATTCATCTTTGACGTGGGGAATGGCCCGGTGGACTTGACGGTGACGTCCCCTGTCCCCTTGAATGATAAGCAGTGGCACTACGTTAGGGCTGAACGCAACCTGAAGGAGGCTTCCCTGCAAGTGGACCAGCTGCCCCTACACACTCTGGAGACCCCCTCTGAAGGGCACTACCGCCTGCAGCTCAAAAGCCTACTGTTCATAGGAGGATCCACCTTCAAAGAGAGCAGTTTCCTGGGCTGCATCCGTGCATTGACCCTGAACGGCGTGACCCTTGACCTGGAGGAGCAGGCCAAGTTGACCCCAGGAGTGACCCCAGGCTGCCCTGGCCACTGCAGCGGCTCTGCTAGTGTCTGTCATAACAGAGGGCGGTGTATGGAAAAAAACAGTGGATATGTCTGTGACTGTACACACTCTGCCTACAATGGACCACACTGCAAGAAAGAAGTGTCAATGTCCTTCGAGAGTGGCTCCTCGGTGACCCTTACCTTCCAGATGCCTTTCCCAGTCATGCACAACAGAGACAGAGGTAGCCAGTCGTCTAGCCGTCAGCCAATCCATAGCCAGTCCTCAGGCATCTATGCCCACGATGGCGAGTCCAGAGAAAACGTTGCCCTCAGCTTTCTGACGACTCGCACCCCTGCCATGTTACTCTGTGTCAGCACCTACCATCAACAGTACCTGGCTATCATCCTGGCTAACAACGGGAGTCTGCAGATCTGGTTCCGtctgaacagagaggagagagccgAGATCTTTACTCCCAAAGCCTCCAGCCTAGCCGATGGGCAGCTCCACCGTGTTCAAGTACACCGGGAAGGCAAAGACATTTATGTCCAGATTGACAAAGACATCAACCAGAAATACAACCTTTCTTCTGACCTGAAGATGAACACACTACGATCTCTGACTTTGGGTAAAGTCACAGCTACATCAGCAGGACATGCTGGTTTGGCTGAGGAGGTGCTTAGGGCAGGATCCAGGGGTTTCATTGGCTGCCTGTCGTCTGTCCAGTTCAATCATTTGACACCGCTGAAGACAGCCATTCTGAATCATGGAAGCTCATTAGTCCATGTTCTTGGCAATCTAGTTGAATCGAACTGTGGAGCCTTAGCTGATAGTACAACTTCACAATCAACATCTGAGGGCGTCGATAGGGGCATAGATCGACTGAAGAAGACAAGAAGTGATTCAGCAGTAATTGGAGGTCTCATCACAGCTGCGTTCCTCATCACCCTCTGTGCCGTGGCCGTGACGTCGTGCTTCCTGTACCGCCGCTGcagccacacccacacccacccccAGGAGAAGTCCTCTATCTCACAGAAGAAGGATCCCAGACACAGCCCGGAACACAGCTACCCTGCAGGCTTGGAGAACAGCTATCCTGTAGACTTGGTCTTGGATCTAAACCTGGACCTGCTCAGCTCTGTGAGTCACAGCAGAAAGGAGTACTACATCTGATGCCACCATAGCCTTCTTTGCCCAATCTCCTGCCTCCTGTTCCGCACACTGTTCTGCCTGGCCTCAAATACAGAACAGGCCCGCCTGGGTAGGTTAGTCACCTGCCTGTCCCTGGGCTTTCTATGAGCAGTGATCATTGGTGATCCATTCCCTGTGTGGCTCCAAGAATGACCCAACAGAGGATGGTCATTCCGCAGTTTTATATCTCAAAGGCTGTTTATTGGGGCATGGGAGCTGTACCACTTTTTATGTGCAATGACAATTGGAGAACATTTATTATATATCTACTTTATATTATATTGCCCTAACGTCGGGAGACAAAAAGCCTCAAAGAATCAGATCCACCCCAGTGACTTTATAAGCTCGCTTTATATAGCCTTCCATTCTGAATGTACAATTAAAGGGATTTATCCGTTTGGGGTTGGTTGGGCACCGGTACTCTAACTCACTTACTTGTATTCACTTGTGGATTGTGAATGTGATAACGACTGATTAATGATGTTCGCCCATCTGCCAAGGCAAGGTCTGAGCAAGAAATGCACCTGCTCATGCTCCCTGGCTAAACCACTGATCAAATCCCACTGAGAAGCATTGTGACTGTGTGCCAAGGACCTTGTGGCTGGCCCCTTTTTGTTCTCTGAACACATCGGTTTTCTGTTCCCAGTACGTTGTTTTGTTGGGCCCTCACTGCCAATAAccctttcatttttattttttttgcatctAAAGTCACTGACGTCCTGCGACATGTTATGAATCACCAAAGAGTGGTACAGTAAACGGATACTAGATGTCTGAAAGTCAAAGTGTAGTACAGTACAACGTTATGTGATTGTGCTAGTAACTTTTGAAATGAATTCTCTCATAGACCTTAAGAAGATAATCAGAGGGAGTTTAGGGTATAAAGGTCGTTTCATTCTCAGGAGAGCGCTTGTTCTGGTTGTCGTCGTTGTGAGTTTTGTTGAACGGAGAAGTACAGTGTTGTACACATTTGCTACGGTCTCCTCCAGAAACCATGTTACTTGCTCTTACGTTGGTAAAACGTCAAGTCTTCATATTTTGCACAATTAGCAAACCAACAGAACAAGTCAATTGTACAACAAATCTGTGTGGCAAGCTTGCTATACAAACGGAACATGTATTCGGGGGACGATTTTCTGTCATGAAAGACCCACGATAAAGGATTGTTATTGGCTGTTTATATTATTTCAAGTGCATTAGGTCATTTATCTACAGAATGTTATTGTAAAAGATGTACCTCACGGATACAATTAATTTGAATATTCTATTTATTTAGAATTTGTTTTATAGAATTATTCAGGTATATTGTAAACAAATGTAtatttaataaatacatttttacagcTTTA

Function

NR:

description
contactin-associated protein-like 5 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608875.2 True 5680 mRNA 0.50 23 23106642 23133644

Neighbor

gene id symbol gene type direction distance location
LOC118965271 NA coding downstream 8032 23065989 ~ 23098610 (-)
LOC118965270 NA coding downstream 53549 23048031 ~ 23053093 (-)
ahr2 ahr2g coding downstream 70668 22915782 ~ 23035974 (-)
ahr1b ahr1b coding downstream 198504 22832299 ~ 22908138 (-)
LOC110527529 ngl1 coding downstream 293736 22807676 ~ 22812906 (-)
LOC110527533 s100b coding upstream 28946 23161894 ~ 23165209 (-)
LOC110527539 LOC106575227 coding upstream 183945 23317589 ~ 23320557 (-)
LOC118965272 NA coding upstream 193402 23327046 ~ 23329616 (-)
LOC110528816 LOC106575230 coding upstream 259478 23392907 ~ 23552928 (-)
LOC110527541 LOC106575232 coding upstream 724864 23858508 ~ 23934010 (-)
G586890 NA non-coding downstream 2169 23104177 ~ 23104473 (-)
G586877 NA non-coding downstream 23478 23073349 ~ 23083164 (-)
G586876 NA non-coding downstream 24262 23072543 ~ 23082380 (-)
G586872 NA non-coding downstream 43971 23062179 ~ 23062671 (-)
G586845 NA non-coding downstream 111956 22992422 ~ 22994686 (-)
G586908 NA non-coding upstream 11337 23144981 ~ 23145245 (-)
G587004 NA non-coding upstream 108686 23242330 ~ 23242569 (-)
G587174 NA non-coding upstream 116313 23249957 ~ 23250214 (-)
G587186 NA non-coding upstream 132948 23266592 ~ 23266797 (-)
G586878 NA other downstream 19505 23084490 ~ 23087137 (-)
LOC110527522 LOC106575212 other downstream 486526 22609884 ~ 22620248 (-)
G586414 LOC106574278 other downstream 636124 22463208 ~ 22470518 (-)
LOC110527506 LOC106575199 other downstream 1012303 22089741 ~ 22163995 (-)
G587242 NA other upstream 241368 23375012 ~ 23377701 (-)
G588987 NA other upstream 1694844 24828488 ~ 24828700 (-)
G589093 NA other upstream 1837969 24971613 ~ 24979107 (-)
G589529 NA other upstream 2067762 25201406 ~ 25278874 (-)

Expression


Co-expression Network