LOC110527533 (s100b)


Basic Information

Item Value
gene id LOC110527533
gene name s100b
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 23161894 ~ 23165209 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608876.2
ACTGGCAGGGTGGTTGACCAGAGGCACTAGGCCCTCCCCACACCAACTATAAAAGCCTATAGTCTTTGTTCCTCCACAGCCACTACTCACTCTCATCTGCAGATAACCTTTGTCTCAGTCCGAGACACACTGATCACATTACAAACCACAATGACTGACCTGGAGAGTTCACTTGCCACCATCATGGAGGTGTTCCACAGGTACACAGAGAAAGAAGGAGACAAGCACAAACTGAAGAAAAGTGAACTGAAAGACTTGATCAATGAGGAGCTGCCAGCCCTTACAGGGCAAGTGAAGGACCAGGCCACTATGGACAGTTTGATGGAGAGCCTGGACACGGACGGAGACTCGGAATTGGACTTCCAAGAGTTCATGACATTTATCACCATGGTAACTGTCTGTTGCCATGATTTCTGCGAGCACCATGAAGACGAGTAGCTAGGCACCAGttaaacaagagagagagagagagaaagccagtaAATTATAAAGTAGGAACTTTAGTTTGATAAAATACTGAAATGTCAATGCAAActttgtatttttccatttgGTCCCATTTAGATTCAATAGGTTTCTTATACCCTGTTTGCCTACAAATGGTTAACGCACTTTGTTTCATTGCCTGTGATTTGTCAGAGTTGACAAAGCCAAATTGGTTTAGTCCTGAAACGTCATAGAATAGTTTTTGCCAACAAAGCTTAGAGCACTTTTCTTGTATACTGTAAAGCTAAGAGCCAATGTAATATATTCATGCATTTCTGCGGCTCTAAAATGGTTCAATTGTTATCACTAACAATGCATGTGTAATCAGCTACCCCATTCATTGGACATGGTCTGGCAAGTAAAACAAGTATTCTCCagtttgattttgacccccccccccaaaaaaaaaatgttgaattcCAGGCAATACCTTGAATTGAATTCTGTTTTTACGAAAATTGTTTTCAAATTGAACTGTGCTTTGCGAGATGCTATTAAACATATAACATAGATAATCAATAAAGATGATCAAATGAATACAAGGACATACTTTTCACCAGTTACACCATGTTCATTTTACTTGAGATTCATACCATTCACATTTCTGTCTCCTGTAGAAAAGTTGTGATGTGTACCCCTGAGTGGCAGTGTTGCTCCGTGACAAAAGCATTGGCATCTACTGGATGTACGTAAAAGATATTGAATcggtgaaacagagaatgtatCAATCTCCCTGATGCATCCTCAGTAAACATCTCTATACTATCGTAA
>TU669359
GGGGATTGTGGAAACCAGAAGGTCCTAAGTCTGAGGGATCAATACAAATGGCCATTGCATAGAAAATCCTCTTTACAATCACAGTCTTTGTTCCTCCACAGCCACTACTCACTCTCATCTGCAGATAACCTTTGTCTCAGTCCGAGACACACTGATCACATTACAAACCACAATGACTGACCTGGAGAGTTCACTTGCCACCATCATGGAGGTGTTCCACAGGTACACAGAGAAAGAAGGAGACAAGCACAAACTGAAGAAAAGTGAACTGAAAGACTTGATCAATGAGGAGCTGCCAGCCCTTACAGGGCAAGTGAAGGACCAGGCCACTATGGACAGTTTGATGGAGAGCCTGGACACGGACGGAGACTCGGAATTGGACTTCCAAGAGTTCATGACATTTATCACCATGGTAACTGTCTGTTGCCATGATTTCTGCGAGCACCATGAAGACGAGTAGCTAGGCACCAGttaaacaagagagagagagagagaaagccagtaAATTATAAAGTAGGAACTTTAGTTTGATAAAATACTGAAATGTCAATGCAAActttgtatttttccatttgGTCCCATTTAGATTCAATAGGTTTCTTATACCCTGTTTGCCTACAAATGGTTAACGCACTTTGTTTCATTGCCTGTGATTTGTCAGAGTTGACAAAGCCAAATTGGTTTAGTCCTGAAACGTCATAGAATAGTTTTTGCCAACAAAGCTTAGAGCACTTTTCTTGTATACTGTAAAGCTAAGAGCCAATGTAATATATTCATGCATTTCTGCGGCTCTAAAATGGTTCAATTGTTATCACTAACAATGCATGTGTAATCAGCTACCCCATTCATTGGACATGGTCTGGCAAGTAAAACAAGTATTCTCCagtttgattttgacccccccccccaaaaaaaaaatgttgaattcCAGGCAATACCTTGAATTGAATTCTGTTTTTACGAAAATTGTTTTCAAATTGAACTGTGCTTTGCGAGATGCTATTAAACATATAACATAGATAATCAATAAAGATGATCAAATGAATACAAGGACATACTTTTCACCAGTTACACCATGTTCATTTTACTTGAGATTCATACCATTCACATTTCTGTCTCCTGTAGAAAAGTTGTGATGTGTACCCCTGAGTGGCAGTGTTGCTCCGTGACAAAAGCATTGGCATCTACTGGATGTACGTAAAAGATATTGAATcggtgaaacagagaatgtatCAATCTCCCTGATGCATCCTCAGTAAACATCTCTATACTATCGTAACTACCTGCCTCTTGATGTCTCTTGCCAATTCTGGGTTTCAACTGTATTGGGAATGAAGAGACAGTGAAAGCAATAAAACTGAGTGGTCTACTGAGCCAATGGCAACGCTCTCCTGGGAGACCATGCTCTCCGAAAGTATATACACACGGGCTGACACAAGATGAGATTTTTCTCTCTGAAAAAAGAGTAAATCAAAACAGTGGAAACCTTTTAGAGTGGAGACACGAAAGGGGGCAATAGATTTGGGATACGATGGGTTAAACATGGACCACATTGATCGGTTTACTGTAGTAGAAGCACAATTGCTGTAGATACATGATCCACAAATACACAGACATGTAGCCACAGACAATAGATTCTTCTATCACTCCGAATAAATGGTACAGTCAGCTGCGTCATGCACCCCAAAAATCtgaggagggcaggagggacaAAATACGTGAGAAtggctggggagggaggggggtagttcGCACGGGTGTTATGCTCCCCGTCCGTAAGTTAGAGAATTtcgcatttttcaaacacctgaaacagcaaTTTCCTggaatctagagccataatcctTACGCTTGATTCtacgtaaaaaaataaataataataataataatattttaatGCACATCTACGCATACCCCTTGAACTGTCTGTGTCCCTCTAAATGGTGGTTCTTTTTTCAAAGAAACAAAATGTGCA

Function

symbol description
s100b Predicted to enable several functions, including RAGE receptor binding activity; S100 protein binding activity; and calcium-dependent protein binding activity. Predicted to be involved in positive regulation of I-kappaB kinase/NF-kappaB signaling and positive regulation of cell population proliferation. Predicted to be active in cytoplasm; extracellular space; and nucleus. Is expressed in several structures, including digestive system; heart; integument; nervous system; and renal system. Human ortholog(s) of this gene implicated in Alzheimer's disease; Parkinson's disease; aspergillosis; and schizophrenia. Orthologous to human S100B (S100 calcium binding protein B).

NR:

description
protein S100-B-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608876.2 False 1257 mRNA 0.40 3 23162590 23164706
TU669359 True 1975 TUCP 0.41 4 23161894 23165209

Neighbor

gene id symbol gene type direction distance location
LOC110527532 LOC106575221 coding downstream 28946 23106642 ~ 23133644 (-)
LOC118965271 NA coding downstream 63980 23065989 ~ 23098610 (-)
LOC118965270 NA coding downstream 109497 23048031 ~ 23053093 (-)
ahr2 ahr2g coding downstream 126616 22915782 ~ 23035974 (-)
ahr1b ahr1b coding downstream 254452 22832299 ~ 22908138 (-)
LOC110527539 LOC106575227 coding upstream 152883 23317589 ~ 23320557 (-)
LOC118965272 NA coding upstream 162340 23327046 ~ 23329616 (-)
LOC110528816 LOC106575230 coding upstream 228416 23392907 ~ 23552928 (-)
LOC110527541 LOC106575232 coding upstream 693802 23858508 ~ 23934010 (-)
LOC110527544 LOC106574304 coding upstream 1234158 24394807 ~ 24447012 (-)
G586908 NA non-coding downstream 17345 23144981 ~ 23145245 (-)
G586890 NA non-coding downstream 58117 23104177 ~ 23104473 (-)
G586877 NA non-coding downstream 79426 23073349 ~ 23083164 (-)
G586876 NA non-coding downstream 80210 23072543 ~ 23082380 (-)
G586872 NA non-coding downstream 99919 23062179 ~ 23062671 (-)
G587004 NA non-coding upstream 77624 23242330 ~ 23242569 (-)
G587174 NA non-coding upstream 85251 23249957 ~ 23250214 (-)
G587186 NA non-coding upstream 101886 23266592 ~ 23266797 (-)
G587342 NA non-coding upstream 384072 23548778 ~ 23549113 (-)
G586878 NA other downstream 75453 23084490 ~ 23087137 (-)
LOC110527529 ngl1 other downstream 350087 22807676 ~ 22812906 (-)
LOC110527522 LOC106575212 other downstream 542474 22609884 ~ 22620248 (-)
G586414 LOC106574278 other downstream 692072 22463208 ~ 22470518 (-)
LOC110527506 LOC106575199 other downstream 1068251 22089741 ~ 22163995 (-)
G587242 NA other upstream 210306 23375012 ~ 23377701 (-)
G588987 NA other upstream 1663782 24828488 ~ 24828700 (-)
G589093 NA other upstream 1806907 24971613 ~ 24979107 (-)
G589529 NA other upstream 2036700 25201406 ~ 25278874 (-)
LOC110527565 LOC106575142 other upstream 2083974 25215219 ~ 25290844 (-)

Expression


Co-expression Network