LOC110527538 (LOC106575225)


Basic Information

Item Value
gene id LOC110527538
gene name LOC106575225
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 23306816 ~ 23317470 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608882.2
ACAATATAGAGCCGTATTTAAACACGCATGCGTACTTGCGAAAACCGGTCACTGGTTGGTTCCGGAAATAGTAATTTTGTTAGGTCGATAGAACTGAAATCGGGTGTTTTGAATTTGTTCTTTCTCTAACCGTTTTTTTATCTGCATACATTTCGAGTGTCTTTTATGAATAATCAAAAGCAGCAAAAGCCAACGCTAACCGGCCAGCGTTTCAAAACGAGGAAAAGAGATGAAAAGGAGAGATTTGACCCTACTCAGTTTCAAGAAAGTATCGTACAAGGCTTGAATCAAACTGGCTCTGATTTGGAAGCTGTTGCAAAATTCCTTGATGCCTCTGGCGCCAAGCTTGACTACCGCCGGTATGCAGAGACACTCTTTGACATCCTGGTGGCTGGCGGAATGCTTGCCCCAGGAGGTAGTATATCGGACGACCTGACCCGCACAGAGTTCTGCCTCTTCACGGCACAAGAGGACCTTGAGACAATGCAAGCATATGCTCAGGTTTTTAACAAGCTGATCCGGCGTTACAAGTACCTGGAGAAAGGGTTTGAGGAGGAGATCAAGAAGTTGCTGCTGTTTTTAAAAGGGTTCACCGAATCCGAACGCAACAAGCTGGCCATGCTCACTGGCATTCTGTTGGCCAATGGAAACATATCAGCCGCTGTCATTGGAAGTCTCTTCAACGAGAACGTGGTCAAAGAGGGAGTATCTGCAGCCTTTGCTGTGAAACTGTTCAAGTCCTGGATCTATGAAAGGGATATCAACGCTGTTGCTGTCGCTCTCCGCAAAGTCGGCATGGACAACAGGCTGATGGAACTCTTTCCCGCCAACAAGCGGAGCTGTGAGCATTTTTCTAAGTACTTCACTGACGCGGGACTGAAGGAGCTGTCGGACTTTGCCAGGAACCAGGAGGCCATCGGGTCCCGTAAGGAGCTGCAGAAAGAGCTCCAGGAGATGATGGCCCGCGGGGACAACTTCAAAGATATAATTGCCTATGTCAGGGAGGAGATGAAGAAGACTAGCATCTCTGAACAACTGATGATCGGCATCGTGTGGTCCAGTGTCATGAGCTGTGTGGAATGGAACAAGAAGGAAGAGCTGGTCTGCGAACAATCTATCAAACACTTGAAGCAATACAGTCCTCTCCTGAAGGCATTTACTTCCCAGGGAGCCTCTGAGATCATTCTGCTGGTGAAGATCCAGGAGTACTGCTATGACAACATCCACTTCATGAAGGCCTTCCAGAAGATTGTGGTGCTCCTCTACAAAGCGGATGTTTTGAGTGAAGAGGCCATTCTTAAGTGGTACACAGAGGCCCACGTTGCTAAAGGAAAGAGTGTTTTCCTCGAGCAGATGAAGAAATTTGTTGAGTGGCTGAAGCATGCAGAGGAAgAGTCTGAGtccgaggaggaggaagagaactGAGAACTCAACCCTCCGGGTGTGCATTTTAAACGGCACAGTAGGAGCAGTAGGATGTTACTGAAGTGCTCGTCTCTCCCAGTCCTGTTTTTCTATTTTACCCCTCTCCAACTTCAACATTTACATTTAATTCAAGAGCTGTGATGTCAACAGTACACTCCTTATTAGATTTTATTTGAAACTTACCCTTAGTAGTTCACATATATTGTGAATTAAAACCTCAATCATAAAATGAACAAATTATGTGTTGATTTGTTTGGAAAGATGCAGAAATGAACCCCCTTTTTTATTAGAATTTCATTCTACTTGATGATTAAGATACTCTATTGATGTTGCTGCATCCAGTCTAAAGTCTGATAAACCATGATATCCCCGATACTGCTGTACCTGTTAATATTGCAGTAGTGCGCCTTCTTGCCGCGTGACTTAAAGGCACCCTAAAATGACAAGTCATTTGCCTTCTCGCCAAAGGATTTACCGGTAGCCCTATCCTCATGTTAGCTCCTTTCCTTACCTTGGCCTTTTGGACAAACCTGTAATGAACAGTTGAATTGGTGATCAAATGAACGTTGTGCAGTGACTGTCATCTTGGTATAACCACCTTTTGACCTGACTGACATCCTCTCTGGAAGATGAATTGCCAGCTAAGTAATTAATATTGGTTACTACTTTCTTTAATCTGATTAAACCAATTGACTTTTTTAAAGAAATAAAAAGGACTAATTCA
>XM_021608883.1
ATGCCTCTGGCGCCAAGCTTGACTACCGCCGGTATGCAGAGACACTCTTTGACATCCTGGTGGCTGGCGGAATGCTTGGTTTTTAACAAGCTGATCCGGCGTTACAAGTACCTGGAGAAAGGGTTTGAGGAGGAGATCAAGAAGTTGCTGCTGTTTTTAAAAGGGTTCACCGAATCCGAACGCAACAAGCTGGCCATGCTCACTGGCATTCTGTTGGCCAATGGAAACATATCAGCCGCTGTCATTGGAAGTCTCTTCAACGAGAACGTGGTCAAAGAGGGAGTATCTGCAGCCTTTGCTGTGAAACTGTTCAAGTCCTGGATCTATGAAAGGGATATCAACGCTGTTGCTGTCGCTCTCCGCAAAGTCGGCATGGACAACAGGCTGATGGAACTCTTTCCCGCCAACAAGCGGAGCTGTGAGCATTTTTCTAAGTACTTCACTGACGCGGGACTGAAGGAGCTGTCGGACTTTGCCAGGAACCAGGAGGCCATCGGGTCCCGTAAGGAGCTGCAGAAAGAGCTCCAGGAGATGATGGCCCGCGGGGACAACTTCAAAGATATAATTGCCTATGTCAGGGAGGAGATGAAGAAGACTAGCATCTCTGAACAACTGATGATCGGCATCGTGTGGTCCAGTGTCATGAGCTGTGTGGAATGGAACAAGAAGGAAGAGCTGGTCTGCGAACAATCTATCAAACACTTGAAGCAATACAGTCCTCTCCTGAAGGCATTTACTTCCCAGGGAGCCTCTGAGATCATTCTGCTGGTGAAGATCCAGGAGTACTGCTATGACAACATCCACTTCATGAAGGCCTTCCAGAAGATTGTGGTGCTCCTCTACAAAGCGGATGTTTTGAGTGAAGAGGCCATTCTTAAGTGGTACACAGAGGCCCACGTTGCTAAAGGAAAGAGTGTTTTCCTCGAGCAGATGAAGAAATTTGTTGAGTGGCTGAAGCATGCAGAGGAAgAGTCTGAGtccgaggaggaggaagagaactGAGAACTCAACCCTCCGGGTGTGCATTTTAAACGGCACAGTAGGAGCAGTAGGATGTTACTGAAGTGCTCGTCTCTCCCAGTCCTGTTTTTCTATTTTACCCCTCTCCAACTTCAACATTTACATTTAATTCAAGAGCTGTGATGTCAACAGTACACTCCTTATTAGATTTTATTTGAAACTTACCCTTAGTAGTTCACATATATTGTGAATTAAAACCTCAATCATAAAATGAACAAATTATGTGTTGATTTGTTTGGAAAGATGCAGAAATGAACCCCCTTTTTTATTAGAATTTCATTCTACTTGATGATTAAGATACTCTATTGATGTTGCTGCATCCAGTCTAAAGTCTGATAAACCATGATATCCCCGATACTGCTGTACCTGTTAATATTGCAGTAGTGCGCCTTCTTGCCGCGTGACTTAAAGGCACCCTAAAATGACAAGTCATTTGCCTTCTCGCCAAAGGATTTACCGGTAGCCCTATCCTCATGTTAGCTCCTTTCCTTACCTTGGCCTTTTGGACAAACCTGTAATGAACAGTTGAATTGGTGATCAAATGAACGTTGTGCAGTGACTGTCATCTTGGTATAACCACCTTTTGACCTGACTGACATCCTCTCTGGAAGATGAATTGCCAGCTAAGTAATTAATATTGGTTACTACTTTCTTTAATCTGATTAAACCAATTGACTTTTTTAAAGAAATAAAAAGGACTAATTCA

Function

NR:

description
basic leucine zipper and W2 domain-containing protein 1-A isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608882.2 False 2149 mRNA 0.44 12 23306816 23317470
XM_021608883.1 True 1726 mRNA 0.45 9 23307926 23317470
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Neighbor

gene id symbol gene type direction distance location
aox6 LOC106575224 coding upstream 17002 23271803 ~ 23289814 (+)
LOC110527536 LOC106575223 coding upstream 76082 23227353 ~ 23230734 (+)
LOC110527535 LOC106575222 coding upstream 85813 23193574 ~ 23221003 (+)
LOC110527523 stat1-2 coding upstream 584277 22684527 ~ 22722539 (+)
LOC110528815 ftcd coding upstream 672258 22621003 ~ 22634558 (+)
LOC110527540 LOC106533352 coding downstream 292050 23609520 ~ 23621369 (+)
LOC110527542 LOC106574301 coding downstream 992368 24309838 ~ 24352001 (+)
LOC110527543 LOC106575235 coding downstream 1041198 24358668 ~ 24426341 (+)
gja5b LOC106574307 coding downstream 1255936 24573406 ~ 24583614 (+)
setd4 setd4 coding downstream 1406156 24723626 ~ 24732898 (+)
G587007 NA non-coding upstream 61842 23244719 ~ 23244974 (+)
G587001 NA non-coding upstream 64839 23241757 ~ 23241977 (+)
G586998 NA non-coding upstream 67238 23239256 ~ 23239578 (+)
G586917 NA non-coding upstream 139200 23167358 ~ 23167616 (+)
G586760 NA non-coding upstream 140656 23161633 ~ 23166160 (+)
G587061 NA non-coding downstream 49374 23366844 ~ 23425348 (+)
G587351 NA non-coding downstream 242150 23559620 ~ 23559956 (+)
G587423 NA non-coding downstream 288281 23605751 ~ 23606028 (+)
G587460 NA non-coding downstream 322729 23640199 ~ 23640452 (+)
G586685 NA other upstream 291696 23010061 ~ 23015120 (+)
c7h10orf53 cssa17h10orf53 other upstream 946589 22356500 ~ 22360232 (+)
G585573 NA other upstream 1353547 21953029 ~ 21953269 (+)
G584643 NA other upstream 2224201 21080828 ~ 21082615 (+)
G587660 NA other downstream 490252 23807722 ~ 23808000 (+)
G588755 NA other downstream 1586861 24904331 ~ 24905581 (+)
G589734 NA other downstream 2286135 25587088 ~ 25608606 (+)
G589933 NA other downstream 2686460 26003930 ~ 26025309 (+)

Expression

LOC110527538(LOC106575225) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 80.
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LOC110527538(LOC106575225) Expression in each Bioproject

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LOC110527538(LOC106575225) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
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Co-expression Network