LOC110527104


Basic Information

Item Value
gene id LOC110527104
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 24519145 ~ 24527712 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474073.2
GACACACAGGTTCACATTCTCACAACCAAAACGAACATGGTGACAATGGAACCACTGGAACTGATGGGACAACAGATGAAAAAAAACATGAAAGGAGCCGACTTCCTGATTTTACTCGACTGTCGATCACGTGTCTGGGTTTGTCGATCATGCTCATTCTCTCATATGCTGTCATCACCCTCCTTCACAAACTGAAGATACACAGGACTGTCTCTCAACAGGATGTGGTAGAACACCAGCCCAAGGTCTCTGGTATGCACGAGAAGAAATTAGGCAGCTGGCACAGAAGCTACAACGAGAAGGTCAACTCTATCTACATGTGCATGCCTGACAAATTACCAGCACAGGGAGCAGGACATGACCTTTGACCTAGAAGCTCTCTATCTTTGTGCGTCCCAAAAGCCTCCACACTTGTACTTTTTGATCACTTCATATAGTGTCTAAATGTGTTTGCTATAGCCTGTTAATTGGAATGCTGTATAAGGTCCACCTTTTGGCATCGCCTATGTTCACCACACTGAGACTGTGCCATATAAAAACACCCTTTGGATAATTGTAGAGGAATGCACacctgactgtaagtcactttggataaatgCTGTGGATAAAAGCGtatgctaaatggcatatattattattattattctattacGAAACGCTCATTACGTGGTCATATAAAGGTACAGGGCTCATCATGTAATCATATAAACAAACAATGCCTTATACCTTACACACCAAGCCATACTGCCCACTTAACatggaagccagcagcaccaatgttttggaggaaacaccatacagctGGCAACCGAAGTCAGCATGCATGCACCCGGCCaccacactgggccaattgtgccctgcTTCATGTGTCTCCCGGTCGTGGCTGGCTGTGACACAGCACGGTATCAAActcggatctgtagtgacgcctctagcactgcagtgcagtgccttagactgctacaCTACTCAGGAGGCACATGCCAGTTACTTGACAAGACCTTTAAGAAATAAAAAATCTTTGGACAAAAAACAGTTAGATTGTGAGCGGAAGGCCAACATAAAACATGATTATAAATAATACAAGGTAGGCTAAATTGATTCATAGAACATACACAAACctgtctcagagcatttcgtatcaTTCTTTACGTAAATCCGATACACCACATTTAGTATGacatgttacgtttcgtatggtgtgttttcatttgtggatgtccatcatccaa
>TU671229
AGTAACATTCATGCTATGCAGTAGAATTGCCATTAAGCAACAAGTAAAAGCATATTTTTATTTCCTTCTTGTCCTTCAGAAAGGAGCCGACTTCCTGATTTTACTCGACTGTCGATCACGTGTCTGGGTTTGTCGATCATGCTCATTCTCTCATATGCTGTCATCACCCTCCTTCACAAACTGAAGATACACAGGTAGGTGATCGTGGCCCTGTTCTGATTTTAGCAGTACAATATCATGAATGACCGTTAACAAAAACAAACTGGATTTGATAAATGAATGCCTGGATTTTTTCAATTTCAGTGAGTCTCTTATTCAATAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474073.2 False 1232 mRNA 0.43 4 24519145 24527712
TU671229 True 322 lncRNA 0.39 1 24526993 24527314

Neighbor

gene id symbol gene type direction distance location
LOC110527546 fstl1 coding downstream 26721 24467842 ~ 24492424 (-)
LOC110527545 LOC106575074 coding downstream 51921 24463088 ~ 24467224 (-)
LOC110527544 LOC106574304 coding downstream 72133 24394807 ~ 24447012 (-)
LOC110527541 LOC106575232 coding downstream 585135 23858508 ~ 23934010 (-)
LOC110528816 LOC106575230 coding downstream 966217 23392907 ~ 23552928 (-)
LOC110527547 LOC106575076 coding upstream 19310 24547022 ~ 24552025 (-)
LOC110527549 LOC106575079 coding upstream 57738 24585450 ~ 24691608 (-)
LOC110527556 LOC106575147 coding upstream 181509 24709221 ~ 24711160 (-)
cbr1 cbr1 coding upstream 193757 24721469 ~ 24723623 (-)
cryzl1 LOC106575083 coding upstream 205285 24732997 ~ 24737996 (-)
G588537 NA non-coding downstream 10757 24508008 ~ 24508388 (-)
G588435 NA non-coding downstream 167154 24347560 ~ 24351991 (-)
G588414 NA non-coding downstream 216103 24302806 ~ 24303042 (-)
G588404 NA non-coding downstream 226148 24292769 ~ 24292997 (-)
G588793 NA non-coding upstream 16830 24544542 ~ 24544764 (-)
G588802 NA non-coding upstream 27046 24554758 ~ 24555025 (-)
G588803 NA non-coding upstream 27407 24555119 ~ 24555582 (-)
G588817 NA non-coding upstream 44676 24572388 ~ 24624923 (-)
G588882 NA non-coding upstream 139990 24667702 ~ 24667919 (-)
G587242 NA other downstream 1141444 23375012 ~ 23377701 (-)
LOC110527533 s100b other downstream 1353936 23161894 ~ 23165209 (-)
G586878 NA other downstream 1432008 23084490 ~ 23087137 (-)
LOC110527529 ngl1 other downstream 1706642 22807676 ~ 22812906 (-)
LOC110527522 LOC106575212 other downstream 1899029 22609884 ~ 22620248 (-)
G588987 NA other upstream 300776 24828488 ~ 24828700 (-)
G589093 NA other upstream 443901 24971613 ~ 24979107 (-)
G589529 NA other upstream 673694 25201406 ~ 25278874 (-)
LOC110527565 LOC106575142 other upstream 720968 25215219 ~ 25290844 (-)
G589705 NA other upstream 1017023 25544735 ~ 25545418 (-)
G588559 NA non-coding downstream 2042 24524685 ~ 24524951 (-)

Expression


Co-expression Network