LOC110527547 (LOC106575076)


Basic Information

Item Value
gene id LOC110527547
gene name LOC106575076
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 24547022 ~ 24552025 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608896.2
TCAGACTCAATTCATTCACTTCTGCTCAGTGGTGCGACAAGGACTAGGGGCCTtaggtgggaaagagagaggaaaaaagttCACTTCACACCATTGGGTGCCAAGAGAAGGGGAACACAACTACACTGGAGCTCTCACTGTGCGCTGATTGTTGATCATGGGTGACTGGAGCTTCTTGGGAAACATATTAGAGGAAGTAAATGAACACTCAACGGTGATTGGGAGGGTGTGGCTCACAGTGCTCTTCATCTTCCGGATCCTCATCCTGGGCACAGCCGCTGAGTTTGTGTGGGGCGACGAGCAGTCGGATTACGTGTGCAACACCCAGCAGCCCGGTTGCGAGAACGTGTGCTACGACGAGGCTTTCCCCATCTCGCACATCCGTCTGTGGGTTCTCCAGATCATCTTTGTGTCTACACCCTCGCTGGTGTACGTGGGCCACGCTGTGCACTATGTCCACATGGAGGAGAAGCGCAAGGAGCGCGAGGAGGCTGAGTTGAACCGCCAGCAGGAGCTGTGTGAGGAGAGGTTGCCGCTCGCGCCTGACCAGGGCAGTGTGCGCACCACCAAGGAGACCAGCACCAAGGGCAGCAAGAAGTTCAGGCTAGAGGGCACCCTGCTGAGGACCTACATCTGCCACATCATCTTCAAGACGCTATTCGAGGTGGGATTCGTGGTGGGCCAGTACTTCCTGTACGGCTTCCGCATCCTGCCGCTGTACCAGTGCAGCCGCTGGCCCTGCCCCAACACCGTGGACTGCTTCGTGTCGCGCCCCACCGAGAAGACTGTCTTCATCATCTTCATGTTGGCCGTGGCATGCGTCTCGCTCTTCCTCAACTTTGTGGAGATCAGCCACCTGGGCCTGAAGAAGATCCGCTTTGTGTTCCGCAAGCCGCCGCCCCAGACCCAGGGCGGACAAGACGGCGAAGACCAGAGCCCCCCTGAGGAAAAGAGCCTGCACTCCATGGCCGTGTCGTCCATCCAGAAGGCCAAGGGCTACCGGCAGCTGGAGGAGGACAAGCCCGCATCGCACTTCTTCCCCTTAACAGAGGTGGGCATGGAGGCAGGCAGGCTGCCCGTACCTTACCAGATGGAAAGTGAGAACGTCTCTAAAGTGTACGACGAGTCTTTGCCTTCCTACATCCAGACCACTGGGGCGGAGGTGAGGGTCCTACCGGAAAGCGGCGAGGACGAGGGCCCCGCGGAACCCGACATTGAGGCTACCGACACGATAGCAGACACCAGACCACTCAGCAGTTTAAGCAAAGCCAGCAGCAGGGCAAGGTCAGATGATTTGACAGTATGAACGTGAAATCAATGTGAAAAAGCATGGGAGCAAAGCCTCACAGAGCCTTAACTCTCGCTGTGAGGGAAGTTAACATCAGCTTGTTATTCAGTAAAAAGAGTTTAAAATGCTGTGCAATGTGCAAGGAGCCCTTAGTTTTCAAAGAAAGATAAACCTGTATTTTATAAGACAGCATTTTTTGTACTGTTTTTATCAATCTATTTAAAAAGGTAACAGAAAGAAAAAAGGTCATTTTCAGCATGATTTGTATCGTACAAGAGGAGGTTATTATTTAACACAAATGTGCTGTTTTTTAATTCACATATTTTCTATCAAGAGTTTTAACCAAAAATTATCAAACGCTTCCGATGTTTACATTTTTTGACTAGCCATTTAGCTTGATGTtaaatgttatatttctattGAACAAGTTATTTTTGCAGTACTGTCAGGGTTACACTtgagcgtgtgtgtatgtattacaATCATTTCACCTCATCTACTCAAACATATACAACTCATTTATTTCACCTAATAGACCTACAGTATGTGTGCAAGCTGTGTAATGTCCattagatttatttattttttatctgtgaGGTGAAACATCACATTCTCGTAGAATTGCCAACaacataaaaaaaagaaaaaagaaaggaCTACTGGTTAAATGCAAATTGACATCAATCTTGGCATTTACGTTTTTAATCCACAACATGTATCGAAAAACCTTGATAAACGTATTTCATTGATAACTATGGGAACCATGGAAGCTTACCGAGGGCCAAATACTTTCTTCCGCCATGATGATAAAGATCTTGCCCTATCAGCACAAAGTATTGTTGAACAAGAGAGAAACAAATAAATAACTCATATTCACAAAACAGGACTTCCTTGACAAAGTTTGAAAGAAAACAACTTTTTTGATTCCATCTCATGAAACGTAGCAACCATAAGCAGTGTAGCCAAAGTGCTCAGTTCACAATGTATATTTCAAAACTAGAATGAGGGCCTCGCAATGAATTAATTTACACAGTGGTCAACACACTAACGTCTATCATGTCGGTCAGGTGTCGACACAGATCAACCAAGAGTCATATTGTCAGGCAATATGCCATCTTGCTTTACCGATGTTCATATGTACAAATATATGATGAAGAGGTATTTCAATTGTATTGGTTATCCAGTTGATTGATTTGTACCACAAATGAAAACTATACATATCAGAAACCCATTGACACTAATTCTGCTAACTGGACAGTGGCAGAACCTAAATGCTGAAGTGAAACAATTTACGGGCCTTAAAATCAACCTTGCTTTTAAACTATGGAAACATTTATTACTGTAAGTGCCTTAAAGATATACTTTCTGATACTTGTCTTCAGTCTGTCTGAGCCCTTCTATATTGTGACGTTGAAACATCATATTGTGAAATTGAAGGTGGAATTGTGTGTCTAAATGGAATGTCTGTAATGTTTTTTATGAGCGTGTTAGTGTTGTCGATTTAATTTCTATTTTCATTATTTTACAAAAAATGCTATTTAAAACGGTGTAGTGGTTAAGGCATTGTTGCTCTGGGAACTGCTCTACTGTCGTTAACTTGAATTAAATCACAATTCTATGTTAGGTTATTCAAACATACAGTTTAGAGAAATAGAATCCCCCTCCTATCTCCTAACGGacaaaaacagacaaacagaaaggaAGTACTGTAACTGGTTTGTTTTCATTTGCTTTggcaaaaacattttaaaacgtgTTCCGTTGTGTGCCCAAATGAACAGGACCCACACCAGAGATCACCACGCTCCAGACAATGTGCCTTTTAAGACTGATTCGAAACACTGATTTTTCTCTGATAAACATTTCAATGGTGCTTTCATTCCGACTAAGTCCTACCATTTCGCCAGAGGCCGAATGATTCAGCAATCAGTATCGCCATGAACACATTGCAACAAATAATGAGAGGTGTTTAGCACAATCACCAGCCAGAGGAGGTAAAGCAAACATTTCTGAGTGCTGATATATTTGGGAAAGTAATGCTTCCATGGAGGGGGGAGTATTGAGCCTTGTTCAACCAACAAACGCAAACCATTTCAGTATAGTGCAAAGGCCCCTCAACCCCCTGTCCTAGACAAGACGCTACAAGCTGCACGGTTATCAACTTAGCCCAAAGCTCAGATATGTGTGTAATGTGAACAGGGCAGACATTCCCTTCCGAGGGCTGCTCCAGATGGGGTGCTGTTCATTTGGATTAAATCTCATTTAAAAATGAAATCCAAAACTAATTCATGACATTGGCAAGGTATCCAGTTAAACATTGAGCCATGCTGAAAGTCATCGGCCTTGCTGCCCTGCTCATCTGAATGTCAGTAGGTGTAACGAGATTTTTTATCCCAATGTTCTAACTGAACTATTTTATAGCTTTGACCAATTCTCCAGAGGTTGTAAGGCCCTACCAGCTCATATTgcgaaatagtaacacaatggtCTAGTCACACACATGATTAAATTATGACTAACaaatttcatacaattatatgatTACAGGGTGGAATACTTTAATCATTACTTTAAACATATAAATTCCTTTATCAGTAGGGAATATCTGAGATATTAGGGAATATCGGGAATATCAGTAGGAAATATTAGTTTATTATCAAGCTGTGTTCATTTCCAATAATCAAGAGACAGACGAGGGCCGTGTGACTTCAAACCTCAACATAGGGTTCAGTGTCCTAGCGGTATCAAAGTCATTCTTTTATTCCGTTTTTACAATAAAAATAAGTATTCTTAGTCttagaaaaaaaataaacgttttacTAACTTGTAGTCCTATTTGCTCATAGTTGTGTGCAAGTATCATCTTTTGAAACTGTGAACAAGGCCAATTAAAGGTCAGGTGTGGTCAAGAGATGCCGCCTCCTTGTCTTTTCTGCATCACACATACAGACTTGggttgcacacgcacacacacacacacacacacacacacagtatgtatTGTAATTTGCAAGTATAAAAGGCCATGACTTACATCAATTGTATCGGTGTGTAATACATTTCACCTGACCTAAACACTTACATTTCACAGATTCGATGGTACTCCGAGTGTCTGCTTGTCAAATACTGTGATAATGcaacacatttttggttattaCTGTCGGCCAAATATACTCCACAAAAAGCTTGTATTGAGAAGCATGTTACTATACATGTGAAAAGACAATATGTCTCATCACAGCAGCACAAAACTAAACTCTTGACAAGCCTAGATTGTTGTAGTCGTGTAGTCATAGCAAGCAACATGATGGCTGGGCATAGAGCATAGTATGCTTT

Function

NR:

description
gap junction alpha-8 protein-like

GO: NA

KEGG:

id description
K07617 GJA8, CX50; gap junction alpha-8 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608896.2 True 4624 mRNA 0.43 2 24547022 24552025

Neighbor

gene id symbol gene type direction distance location
LOC110527104 NA coding downstream 19310 24519145 ~ 24527712 (-)
LOC110527546 fstl1 coding downstream 54598 24467842 ~ 24492424 (-)
LOC110527545 LOC106575074 coding downstream 79798 24463088 ~ 24467224 (-)
LOC110527544 LOC106574304 coding downstream 100010 24394807 ~ 24447012 (-)
LOC110527541 LOC106575232 coding downstream 613012 23858508 ~ 23934010 (-)
LOC110527549 LOC106575079 coding upstream 33425 24585450 ~ 24691608 (-)
LOC110527556 LOC106575147 coding upstream 157196 24709221 ~ 24711160 (-)
cbr1 cbr1 coding upstream 169444 24721469 ~ 24723623 (-)
cryzl1 LOC106575083 coding upstream 180972 24732997 ~ 24737996 (-)
LOC110528817 LOC106575139 coding upstream 269170 24821195 ~ 24823487 (-)
G588793 NA non-coding downstream 2258 24544542 ~ 24544764 (-)
G588559 NA non-coding downstream 22071 24524685 ~ 24524951 (-)
G588537 NA non-coding downstream 38634 24508008 ~ 24508388 (-)
G588802 NA non-coding upstream 2733 24554758 ~ 24555025 (-)
G588803 NA non-coding upstream 3094 24555119 ~ 24555582 (-)
G588817 NA non-coding upstream 20363 24572388 ~ 24624923 (-)
G588882 NA non-coding upstream 115677 24667702 ~ 24667919 (-)
G588892 NA non-coding upstream 127385 24679410 ~ 24679698 (-)
G587242 NA other downstream 1169321 23375012 ~ 23377701 (-)
LOC110527533 s100b other downstream 1381813 23161894 ~ 23165209 (-)
G586878 NA other downstream 1459885 23084490 ~ 23087137 (-)
LOC110527529 ngl1 other downstream 1734519 22807676 ~ 22812906 (-)
LOC110527522 LOC106575212 other downstream 1926906 22609884 ~ 22620248 (-)
G588987 NA other upstream 276463 24828488 ~ 24828700 (-)
G589093 NA other upstream 419588 24971613 ~ 24979107 (-)
G589529 NA other upstream 649381 25201406 ~ 25278874 (-)
LOC110527565 LOC106575142 other upstream 696655 25215219 ~ 25290844 (-)
G589705 NA other upstream 992710 25544735 ~ 25545418 (-)

Expression


Co-expression Network