LOC110527557 (pknx1)


Basic Information

Item Value
gene id LOC110527557
gene name pknx1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 24811375 ~ 24820304 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608924.2
TACGTAGTGACGACACACGAAAACTGCGGGCCCGGATTGCAGCAGCCCCTTGTCACTGTGACGAAGATTGGCACTAAGGACTGGTAGCCACACAGGTCTTAGGTCTTGGACTGGAATGCCTGTGTATTGGCATCATTGGCAGCGACCATGATGGAAGCCCAGTCGGCATCTCTAGATGAGTACCCGGAGGTAGATCAGGTCTTGGTGCAGATGCGCGTGGGAGCAGATGTGGAGGGGGATCCGGAGCAGAGTCTGACCGAGGGAAGCGAGGGGGGAGCAGGCAGCCCCTCTGCCATGCAGCCCCAGATGCCCATGGACACAGACAAGCAGGCCATCTACAGGCACCCCCTGTTCCCTCTGCTGGCCCTGCTCTTTGAGAAGTGTGAGCAGTCGACTCAGAGCTCGGACTGCGTCAGCTCTGCCAGCTTCAACGTGGACATTGAGAACTTTGTCCGCAGCCAGAAGAAAGAGGGCAAGGGCTTCTTCTGTGACGACCCAGACGTGGACAACCTGATGGTGAAGGCCATCCAGGTGCTGCGTATCCACCTCCTGGAGCTGGAGAAAGTGAGCGACTTGTGTAAGGACTTCTGTAGCCGCTACATCGCCTGCCTGCGCACCAAGATGAACAGTGAGACCCTGCTGAGTGGAGGAGAAACTGACagcccctgttcccctgtccagatacagacCTCCAGCCCACTCACAGGAACCCTCAGCCCTCAAGGCATTGTGATGTCAGCCTCGGCCCTGCAGCAAGGCAACGTTACCCTGACAACAGTCAATTCTGCTGGCCAAGTGTTAGCAGGTGGTACAGTGTACCAGCCCATCACAGTAGTCACTCCTCAGGGACAGGTGGTGGGACAAGCTATCTCACCCCAGACAATACGCATCAACAACACACAGctccAGTTGCAGCTCAATCAGGACCTAAGCAGTTTCTTCACCCAGGAGGACAGCTCATCCAAGAGCAACAAGAGGGGGGTCCTGCCCAAATCAGCCACCAACATCATGCGCACCTGGCTCTTCCAACACATAGGGcatCCCTATCCCACAGAGGACGAGAAGAAACAGCTCGCCATACAGACCAACCTGACCCTGCTGCAGGTCAACAACTGgttCATTAATGCTAGGAGGCGTATCCTCCAGCCCATGATGGACAGCAGTGCTTCAGACACGCCCAAGAGCAGGAAGAGGACTCCCCAGAGCCGGCCCACCCAGCGTTTCTGGCCCATGGCCAACAACGTTGCCTCGGCCGGTGTAGGGCAAGAGGTGGCCATGGACGATGACGTGACCATGGTGACGATGGGCATGAGTGTAGACGAGCTGCAGACGCTGACCTCAGATGGTGCAACACTGGCCATGCAGCAGGTGATGATGGGAGGAcacagcgaggaggaggagggcgagagcgaggaggaggaggaagaggaggaggaggggggtgacATGGCCGGATTGGAGTGACATACCACTACTGCGGGATGTGACGTCACACCCTCATGCATGCCTATGTTTGACTATAATACTCAACACTCATCACAGTGTCCAAGACAACCCACACTAGGCCTTTAAGGCCCTTCtagaaacagaaaaaaaatgCTATTTTTATATGTAAAATGTTTGGAATGAAGGCTGTTTAATTTTTTTCATTTGGCTTTTTTGCTtagtgtttt
>XM_021608923.2
TACGTAGTGACGACACACGAAAACTGCGGGCCCGGATTGCAGCAGCCCCTTGTCACTGTGACGAAGATTGGCACTAAGGACTGGTAGCCACACAGGTCTTAGGTCTTGGACTGGAATGCCTGTGTATTGGCATCATTGGCAGCGACCATGATGGAAGCCCAGTCGGCATCTCTAGATGAGTACCCGGAGGTAGATCAGGTCTTGGTGCAGATGCGCGTGGGAGCAGATGTGGAGGGGGATCCGGAGCAGAGTCTGACCGAGGGAAGCGAGGGGGGAGCAGGCAGCCCCTCTGCCATGCAGCCCCAGATGCCCATGGACACAGACAAGCAGGCCATCTACAGGCACCCCCTGTTCCCTCTGCTGGCCCTGCTCTTTGAGAAGTGTGAGCAGTCGACTCAGAGCTCGGACTGCGTCAGCTCTGCCAGCTTCAACGTGGACATTGAGAACTTTGTCCGCAGCCAGAAGAAAGAGGGCAAGGGCTTCTTCTGTGACGACCCAGACGTGGACAACCTGATGGTGAAGGCCATCCAGGTGCTGCGTATCCACCTCCTGGAGCTGGAGAAAGTGAGCGACTTGTGTAAGGACTTCTGTAGCCGCTACATCGCCTGCCTGCGCACCAAGATGAACAGTGAGACCCTGCTGAGTGGAGGAGAAACTGACagcccctgttcccctgtccagatacagacCTCCAGCCCACTCACAGGAACCCTCAGCCCTCAAGGCATTGTGATGTCAGCCTCGGCCCTGCAGCAAGGCAACGTTACCCTGACAACAGTCAATTCTGCTGGCCAAGTGTTAGCAGGTATGTCTCCGTGGCATACCACCTCTACAGGTGGTACAGTGTACCAGCCCATCACAGTAGTCACTCCTCAGGGACAGGTGGTGGGACAAGCTATCTCACCCCAGACAATACGCATCAACAACACACAGctccAGTTGCAGCTCAATCAGGACCTAAGCAGTTTCTTCACCCAGGAGGACAGCTCATCCAAGAGCAACAAGAGGGGGGTCCTGCCCAAATCAGCCACCAACATCATGCGCACCTGGCTCTTCCAACACATAGGGcatCCCTATCCCACAGAGGACGAGAAGAAACAGCTCGCCATACAGACCAACCTGACCCTGCTGCAGGTCAACAACTGgttCATTAATGCTAGGAGGCGTATCCTCCAGCCCATGATGGACAGCAGTGCTTCAGACACGCCCAAGAGCAGGAAGAGGACTCCCCAGAGCCGGCCCACCCAGCGTTTCTGGCCCATGGCCAACAACGTTGCCTCGGCCGGTGTAGGGCAAGAGGTGGCCATGGACGATGACGTGACCATGGTGACGATGGGCATGAGTGTAGACGAGCTGCAGACGCTGACCTCAGATGGTGCAACACTGGCCATGCAGCAGGTGATGATGGGAGGAcacagcgaggaggaggagggcgagagcgaggaggaggaggaagaggaggaggaggggggtgacATGGCCGGATTGGAGTGACATACCACTACTGCGGGATGTGACGTCACACCCTCATGCATGCCTATGTTTGACTATAATACTCAACACTCATCACAGTGTCCAAGACAACCCACACTAGGCCTTTAAGGCCCTTCtagaaacagaaaaaaaatgCTATTTTTATATGTAAAATGTTTGGAATGAAGGCTGTTTAATTTTTTTCATTTGGCTTTTTTGCTtagtgtttttattttgtttagtttgttttttaaagaatattTATGTATGAACATTGAATGTCCAATATGGCTGACCTGCTTTTCAAGGTCTGTTGGATTTCTCTAATAATAAAATGTTCAAGAAAGA
>XM_021608922.2
TCGCCCATCAATCTAACAATCGACGCAACATGCTTGAATGCAGTGGCTCGCCATGGAATGAGCCAATGTGCACTTTGCAGAATGGACAGTGAGCCAAAAAGACTGATCACACATAAAGGCAAGCTGTTGTGgcgagagaaaaaaaagatgTCCGCTTGTTTGGAAAAGGCGCATTGGAAATGGACTGGTAGCCACACAGGTCTTAGGTCTTGGACTGGAATGCCTGTGTATTGGCATCATTGGCAGCGACCATGATGGAAGCCCAGTCGGCATCTCTAGATGAGTACCCGGAGGTAGATCAGGTCTTGGTGCAGATGCGCGTGGGAGCAGATGTGGAGGGGGATCCGGAGCAGAGTCTGACCGAGGGAAGCGAGGGGGGAGCAGGCAGCCCCTCTGCCATGCAGCCCCAGATGCCCATGGACACAGACAAGCAGGCCATCTACAGGCACCCCCTGTTCCCTCTGCTGGCCCTGCTCTTTGAGAAGTGTGAGCAGTCGACTCAGAGCTCGGACTGCGTCAGCTCTGCCAGCTTCAACGTGGACATTGAGAACTTTGTCCGCAGCCAGAAGAAAGAGGGCAAGGGCTTCTTCTGTGACGACCCAGACGTGGACAACCTGATGGTGAAGGCCATCCAGGTGCTGCGTATCCACCTCCTGGAGCTGGAGAAAGTGAGCGACTTGTGTAAGGACTTCTGTAGCCGCTACATCGCCTGCCTGCGCACCAAGATGAACAGTGAGACCCTGCTGAGTGGAGGAGAAACTGACagcccctgttcccctgtccagatacagacCTCCAGCCCACTCACAGGAACCCTCAGCCCTCAAGGCATTGTGATGTCAGCCTCGGCCCTGCAGCAAGGCAACGTTACCCTGACAACAGTCAATTCTGCTGGCCAAGTGTTAGCAGGTATGTCTCCGTGGCATACCACCTCTACAGGTGGTACAGTGTACCAGCCCATCACAGTAGTCACTCCTCAGGGACAGGTGGTGGGACAAGCTATCTCACCCCAGACAATACGCATCAACAACACACAGctccAGTTGCAGCTCAATCAGGACCTAAGCAGTTTCTTCACCCAGGAGGACAGCTCATCCAAGAGCAACAAGAGGGGGGTCCTGCCCAAATCAGCCACCAACATCATGCGCACCTGGCTCTTCCAACACATAGGGcatCCCTATCCCACAGAGGACGAGAAGAAACAGCTCGCCATACAGACCAACCTGACCCTGCTGCAGGTCAACAACTGgttCATTAATGCTAGGAGGCGTATCCTCCAGCCCATGATGGACAGCAGTGCTTCAGACACGCCCAAGAGCAGGAAGAGGACTCCCCAGAGCCGGCCCACCCAGCGTTTCTGGCCCATGGCCAACAACGTTGCCTCGGCCGGTGTAGGGCAAGAGGTGGCCATGGACGATGACGTGACCATGGTGACGATGGGCATGAGTGTAGACGAGCTGCAGACGCTGACCTCAGATGGTGCAACACTGGCCATGCAGCAGGTGATGATGGGAGGAcacagcgaggaggaggagggcgagagcgaggaggaggaggaagaggaggaggaggggggtgacATGGCCGGATTGGAGTGACATACCACTACTGCGGGATGTGACGTCACACCCTCATGCATGCCTATGTTTGACTATAATACTCAACACTCATCACAGTGTCCAAGACAACCCACACTAGGCCTTTAAGGCCCTTCtagaaacagaaaaaaaatgCTATTTTTATATGTAAAATGTTTGGAATGAAGGCTGTTTAATTTTTTTCATTTGGCTTTTTTGCTtagtgtttt
>XM_021608921.2
TCATCTACAGACTATTGGATATTCGAATGTTATTATGAGAGATACCTAGTGATGACCGCAATGTAGATGGGATGTGTGCTGTTGACAGTTTTATTTGTTCAACATTTGAAAGCACCAATATTATCTGCTACATGTAGCCTGAGCCGCTATACGATCTTTAGACAGCGAGGGTATGATACACTGGTAATCAAATTAACACGAAATTGTATGcacttttttgtttgttatggAAACACATTTGATTTTTTTCCCCTTATTTATTTTTGCCAATGGATACGGCTTGCTAAGGAGAGATTCGTGGGCCTAGTGTCCCAGTTTAGGATGATGCTTGGTGAACATTACGAACTGTAGATGCACAACTACTGCGTTAAAAAAAATGCTTTATTTAATCAAAATGTGTGCCCGGAAGTTAGGGCTACTGACTGTACAACATACCTCCCACCCTGCACGCGCGTGAATTGATAACTGCACTGTCTGAATTCCATTCTGATACACGCATACAGTGACCAAGCATTTACCACACTCCAAAAAAGATGAATCATCCTACCCCAGAATGAAAGGCCCTGTGTTGGCATAGTACCCTGACTCTACGTTCTTCATTGGCTATGACTGGTAGCCACACAGGTCTTAGGTCTTGGACTGGAATGCCTGTGTATTGGCATCATTGGCAGCGACCATGATGGAAGCCCAGTCGGCATCTCTAGATGAGTACCCGGAGGTAGATCAGGTCTTGGTGCAGATGCGCGTGGGAGCAGATGTGGAGGGGGATCCGGAGCAGAGTCTGACCGAGGGAAGCGAGGGGGGAGCAGGCAGCCCCTCTGCCATGCAGCCCCAGATGCCCATGGACACAGACAAGCAGGCCATCTACAGGCACCCCCTGTTCCCTCTGCTGGCCCTGCTCTTTGAGAAGTGTGAGCAGTCGACTCAGAGCTCGGACTGCGTCAGCTCTGCCAGCTTCAACGTGGACATTGAGAACTTTGTCCGCAGCCAGAAGAAAGAGGGCAAGGGCTTCTTCTGTGACGACCCAGACGTGGACAACCTGATGGTGAAGGCCATCCAGGTGCTGCGTATCCACCTCCTGGAGCTGGAGAAAGTGAGCGACTTGTGTAAGGACTTCTGTAGCCGCTACATCGCCTGCCTGCGCACCAAGATGAACAGTGAGACCCTGCTGAGTGGAGGAGAAACTGACagcccctgttcccctgtccagatacagacCTCCAGCCCACTCACAGGAACCCTCAGCCCTCAAGGCATTGTGATGTCAGCCTCGGCCCTGCAGCAAGGCAACGTTACCCTGACAACAGTCAATTCTGCTGGCCAAGTGTTAGCAGGTATGTCTCCGTGGCATACCACCTCTACAGGTGGTACAGTGTACCAGCCCATCACAGTAGTCACTCCTCAGGGACAGGTGGTGGGACAAGCTATCTCACCCCAGACAATACGCATCAACAACACACAGctccAGTTGCAGCTCAATCAGGACCTAAGCAGTTTCTTCACCCAGGAGGACAGCTCATCCAAGAGCAACAAGAGGGGGGTCCTGCCCAAATCAGCCACCAACATCATGCGCACCTGGCTCTTCCAACACATAGGGcatCCCTATCCCACAGAGGACGAGAAGAAACAGCTCGCCATACAGACCAACCTGACCCTGCTGCAGGTCAACAACTGgttCATTAATGCTAGGAGGCGTATCCTCCAGCCCATGATGGACAGCAGTGCTTCAGACACGCCCAAGAGCAGGAAGAGGACTCCCCAGAGCCGGCCCACCCAGCGTTTCTGGCCCATGGCCAACAACGTTGCCTCGGCCGGTGTAGGGCAAGAGGTGGCCATGGACGATGACGTGACCATGGTGACGATGGGCATGAGTGTAGACGAGCTGCAGACGCTGACCTCAGATGGTGCAACACTGGCCATGCAGCAGGTGATGATGGGAGGAcacagcgaggaggaggagggcgagagcgaggaggaggaggaagaggaggaggaggggggtgacATGGCCGGATTGGAGTGACATACCACTACTGCGGGATGTGACGTCACACCCTCATGCATGCCTATGTTTGACTATAATACTCAACACTCATCACAGTGTCCAAGACAACCCACACTAGGCCTTTAAGGCCCTTCtagaaacagaaaaaaaatgCTATTTTTATATGTAAAATGTTTGGAATGAAGGCTGTTTAATTTTTTTCATTTGGCTTTTTTGCTtagtgtttt

Function

NR:

description
homeobox protein PKNOX1-like isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608924.2 False 1673 mRNA 0.55 11 24811375 24820186
XM_021608923.2 False 1821 mRNA 0.53 11 24811375 24820304
XM_021608922.2 False 1807 mRNA 0.54 11 24811486 24820186
XM_021608921.2 True 2232 mRNA 0.51 11 24811697 24820186

Neighbor

gene id symbol gene type direction distance location
itsn1 LOC100286499 coding upstream 10931 24738197 ~ 24800444 (+)
setd4 setd4 coding upstream 78477 24723626 ~ 24732898 (+)
gja5b LOC106574307 coding upstream 227761 24573406 ~ 24583614 (+)
LOC110527543 LOC106575235 coding upstream 435623 24358668 ~ 24426341 (+)
LOC110527542 LOC106574301 coding upstream 459374 24309838 ~ 24352001 (+)
pdxkb LOC106574311 coding downstream 16980 24837284 ~ 24870911 (+)
LOC110527559 plcc coding downstream 52117 24872421 ~ 24902570 (+)
LOC110527561 LOC106575089 coding downstream 177618 24997922 ~ 25115994 (+)
LOC110527563 alg11 coding downstream 378862 25199166 ~ 25278853 (+)
spp2 spp2 coding downstream 382816 25203120 ~ 25213611 (+)
G588687 NA non-coding upstream 8508 24800584 ~ 24802867 (+)
G588622 cbr1 non-coding upstream 88268 24694821 ~ 24723107 (+)
G588676 NA non-coding upstream 100311 24710319 ~ 24711064 (+)
G588665 NA non-coding upstream 117500 24693590 ~ 24693875 (+)
G588664 NA non-coding upstream 119809 24691356 ~ 24691566 (+)
G588716 NA non-coding downstream 9784 24830088 ~ 24830298 (+)
G588717 NA non-coding downstream 12451 24832755 ~ 24833011 (+)
G588720 NA non-coding downstream 15294 24835598 ~ 24835868 (+)
G588764 NA non-coding downstream 101973 24922277 ~ 24922579 (+)
G588765 NA non-coding downstream 103345 24923649 ~ 24924230 (+)
G587660 NA other upstream 1003375 23807722 ~ 23808000 (+)
LOC110527540 LOC106533352 other upstream 1190006 23609520 ~ 23621369 (+)
G586685 NA other upstream 1796255 23010061 ~ 23015120 (+)
LOC110527523 stat1-2 other upstream 2107554 22684527 ~ 22722539 (+)
c7h10orf53 cssa17h10orf53 other upstream 2451148 22356500 ~ 22360232 (+)
G588755 NA other downstream 84027 24904331 ~ 24905581 (+)
G589734 NA other downstream 783301 25587088 ~ 25608606 (+)
G589933 NA other downstream 1183626 26003930 ~ 26025309 (+)
G590936 gart other downstream 1732250 26552554 ~ 26553542 (+)
G590949 LOC106575121 other downstream 1757103 26577407 ~ 26577933 (+)

Expression


Co-expression Network