LOC110527561 (LOC106575089)


Basic Information

Item Value
gene id LOC110527561
gene name LOC106575089
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 24997922 ~ 25115994 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608927.2
ACCAACATTCAGAGGATCCCTGAATAGCCTTCGCGTTAGGACAAGGTGCTGGAAGTGACAGAGCGAAAGAAAAGACTCCAGCGCTAGAGCGGAAAAACCGTAGCAAGCTACAGTAACTGGCCATTCATTCGGAATCCTGTAGCATCTGTTATCATATCAGCATAAAACAAAACCTGAGCCCCGAAGTCAACTCGGAGCACTCTACTATCCGAAAGAATGCAGCTTGGCAAGTCAACCCGGTGGGAGTGACTGATGAAGATGGGCCAAAAAAGTAGAGTCCACTGGTGAGGAGTGGTGAAGAGTCCAAACAGAACCATAGCGGCTAAACTACCCCGAGCGCCACCATGCCCCGCCTCCCCTTCTGAACTCTCCTGCCAATCCGACTCCACCCCCTgtccctcacacacagacacagtcactcttgCCAGTCGAGCTGCGGGCCGCGCTCGCCATGGCCTCGGCCTACCTGTGGAAGCTGTCGTCCCAGAAGCTGGGCTTTTTCCTGGTGAGCTTTGGCTTCATCTGGGGCATGATGCTGCTCCACTTCACCATCCAGCAGCGGGCCACGCACGAGAGCAGCACCATGCTGCGACAGCAGATCCTGGAGCTCAGCAAGCGCTACATCAAGGCCCTGGCCGAGGAGAACCAGAGTGTCATGGACGGGCCCTACGTGGGAACCATGACGGCCTATGATCTGAAGAAGACCCTGGCGGTGCTCCTGGACAACATCATGGTACGGCTGGGCAAGCTGGAGTCCAAGGTGGAGAACATCTACAACAGCACGGGGGCTAACCTGACCAACGGCACCAGCACGGCCACCCCCAGCGCCTCCAATGCGGAGAAGGTCAACGTGGCAGaTCTGCTGAACGGCGCTCAGGAGAAATGTGAGCTTCCCCCCATGGACGGCTTCCCTCACTGTGAGGGCAAAGTCAAGtggATGAAGGACATGTGGCGGTCAGACTCATGCTACACTAACTACGGTGTGGACGGCTCCACCTGCTCCTTCTTCATATATCTCAGCGAGGTGGAGAACTGGTGCCCGCACCTGCCGTGGAGGACCAAGACACTGGACGAGGAGGCCGACCGGAGGGGCCAGACGGAGATCCGGACGAGCTTCGAGGAGCTATACCGGGTCACGTCTCGGCGAGAGGAGTTCCGCTGGATGATGCTCCGGATCAAGCGCATGGAAGACCCCTGGATCAACGCCATCCGCGCCCTGGCTGCCAAGCAGAACCTGGCCAAGCGCAAGAGGAAGAAGATCCTGGTGCACCTGGGCCTGTTGACCAAGGAGTCGGGCTTCAAGATCGCAGAGAACGCCTTCAGTGGGGGGCCCCTGGGGGAGCTGGTGCAATGGAGCGACCTCATCACCACCCTCTACCTGCTGGGCCACGACGTACGCATCTCCGCCTCCTTGGCCGAGCTCaaagaGATCATGAGGAGAGTGATGGGGAACAAGTCCAGCTGCCCCACCCAGGGGGACAAGGTGGTGGAGCTCATCTACATTGACATTGTGGGCCTGACCCAGTTCAAGAAGACACTGGGGCCCTCCTGGGTCCACTACCAGTGTATGCTGCGGGTTTTGGATTCCTTCGGCACAGAGCCCGAGTTCAACCACGCCCACTATGCTCAGTCCAAGGGCCACAAGACCCCCTGGGGCAAGTGGAACCTCAACCCCCAGCAGTTCAACACCATGTTCCCCCACACGCCAGACAACAGCTTCCTGGGCTTTGTGGTGGAGCAGCACCTGAACGCCAGCGACATCCGCCACATTGACGAAGTCAAGCGGCAGAACCAGTCGCTGGTCTACGGCAAGGTGGACAACTTCTGGAAGGACAAGAAGACCTACCTAGACATCATCCACACCTACACGGAGGTGCACGCCACCGTGCACGGTACCAGCACTGTGCACTTGCCCAGCTACGTGAGAAACTACGGCATCCTGAGCGGCCGGGACCTGCAGTTCCTCCTCAGGGAGACCAAGCTTTTTGTTGGCCTGTCCTTCCCCTACGAAGGCCCCGCCCCCCTAGAGGCCATAGCCAATGGCTGTGCCTTCCTCAACCCCAAGTTCACCCCGCCCAAGAGCAGCAAGAACACGGACTTCTTCAAGGGCAAGCCCACCCTGAGAGAGTTGACCTCCCAGCACCCGTATGCTGAGGTGTATATTGGCCAGCCTCACGTGTGGACGGTGAACATCGACAACCCTGCGGAGGTGGACAGAGCCATCCGCTCGATCCTCAGTcagaagATCGAGCCCTACCTGCCCTACGAGTTCACCTGTGAGGGGATGCTGCAAAGAGTCAACGCCTTCATTGAGAATCAGGATTTCTGCCATGGCCAGGTGATGTGGCCTCCCCTCAGTGCTCTGCAGGTGAGGCTGGCTGAGCCGGGGAGCTCCTGTAAGCAGGTGTGTCAGGCGGAGCAGCTCATCTGCGAGCCCTCCTTCTTCCAGCACCTCAACAAGGACAAGGACCTGGCCCGGTTCGGCATGGACTGCCAGACGGTGGAGTCGTCGGGCGACACGGTGGTGCCTGCGTACAGCGACGCACGTCACCACTGCGTCTTCCAGTCGGACCTGCTGCTGTTCAGCTGCGCCGGCGCCCACCCCTCCCTCAAACGCGTCTGCCCCTGCCGGGACTACATGAAGGGCCAGGTGGCGCTGTGCAAAGGCTGCCTATAgcccctgtctgtctgggtgtgtggAGAGGATCGAACTGGAGTGGATTGGACCCCCGTACCCTTCCAGAGAGCTGCAGGGAATGGGGGGGTTGGGGATCTCTAGCTCTAACCACTCAGATGGCTTGACTCCTCTCCCTGGCTCCACACCTGCAGTCCTGCAGCCTAACTCCTCCCACAGCCAGGCCtctggagggaggaagagcagcCTGGGAACCAGACAACCAGGAGACATCTGTATTATTTATGTCTGTTTTTAATCGCCTGAACTTTGACCTTTTAAGGCATGTTGATCAGCTCGTCAGACAGACACAGCATCGGCAGCAAACTGTGGAAATTCAAATGGTGGACAGAAAGAGGCCAGTGAGCTATATACATACTCTGGGAACTAGGAATGTCAATGGAAAAGTTTTCAGTAAGGCACCTGGCAGGAGGAAAGGAGGGTACAGAAAAAAGAGACATTGCGCATCGGCCTGAATTACTTGAATCAATGGGAGTCGCTGTATATTTGAGGCAGAGCGCATAGCAACAGAGCTCACTACTGCCCCTAGGATGTGTGAGAGTGGGTGGTACTGGAGCCGGTGGGCCAGTGACTCCACCCACTGTATCTCTCCAAGCTTGTAGTCGCATCGTGGGACCAACGAGCTGGTGTGTCGCTACACTCGGCATGCTTTCCTCTCTGCCCCCCTGTCCCCTTTTTATCTTTGAACTCTTTTAGCTATGTAGGTTTGCACTGGAGACCCATAAGAGGCCGTCCCCAGGCAGTAAGGCTCTGTTTCAATGTCCACACTAGCGTACTACTTAGGATGAAGCAATGCACAGGGCATGTATTCTGAATGGTATGCTCCAATGGAAAGTTTCCCATAGACCCTGATCtatggtcagttttgcatttcccttATTTATGGTTATGATTGGGGGagtggaagctgatcctagatctgtacctaggggaaacttgaCCAAAAGGAAGTTAAGTGTGAAGAACAAGACGAAGCAGAGCCAGTTTTACACTGTAACTGTACCGCTCCCCATCGTCGCGTCTGGACAGGGGAGCGGGTCAGATGTAGATATAATGTTGATTTTGAAATGTTCTAAATCGCAAATCATTTTTAATCCTGAGGCATTGTCCCTCGTGGTCATTCCCAactacacctcacacacacacacaccgtccagCATGGCTCCTCTGTAGCCCTGCATGGTAGATTGCCCCTCCTCATGCTCCCAATGTACAGACTAGAGGCTGAGTTTTCGAAAtcgcacacattcacacacacacctgactgacCGGTTGGAATGTGCTGGGGATAAGAGGTGTGTGCCAAATAATTGCCAGTGGCTAATGAAAATAATAATTAGTCATTGATCaatttcaatcaaatgtaaaaaaaaaaatttaacagGATTATCAGGTCAGATCAGTCACATGTGACAGTGATGACATAGTGTGGTACTGTTCTGTAGACAGTAGAACACCATCACAGCTGTAGTGGGAAAGGGCCCCTCTGGCAGATCAAACATCAGTATGCTCAATCACCAGTATCACATAGGACCGTTGCTTTGACCACAATAGATTTATCGGGAACGTATTCTAGATTCTAAAGAGATATATTGACCATGAGTACTTGTATTATAGATATTTAAAACCTTTATGTATACAGTCGACCcgaaagatacacacacacacacacaaacatcattTCTATGGATGCACTGTAAGTTATAGCTCTTGAcaagagcaacacacacacctgcaactTTACTTGTTTCCTTCATTTGGAGATCGTTTAGGATCCTAATTTGCCTGCcaattatttttctttttttttacgtGTCAATAAAAGCTTGAATTAGTAGTCCTTGTTGTGAATGGaaataatgcactactttaaccTAATTTACTGAAGTTTAACAACATATATGACTAATACTGTATATTCTTCATATgggttttaaattatttttaaatgtgttttatatacagATCTTTCTCTGTGTTTGCTGAATTGTTTCTTTTTATTTATAGAAAAGGAGATTTTACAGAGGGTCATTTTATTTATGGAAGAAATAATATAACGTGTACATTCAAGTGGATGGATTAGACGGGAGTTGTTTGTCCCATCTGACTCCAACCTCCAGCAACAGtgatgagagagaatgaggaatGGCAAAGAGAATATCCAAATGCTTTGGCAACATGGCTGCgaaaggaatagggtgtcatttcagacacGCCTTGAGACCGACCGTCCACTTAGACACTGACGAAATGTGTTGGACTGGACAGTAGTGACATAGACGTCTCGCTCCTCTCATCACTGTGTTTTTCGGGGTGATGACGACGACATCGGGACAAAAAGCAGCGcgcacattttttttaatttttattgtaAATGCCAGCAAAGAACCTCgtgttgttttttattttcagATCTTAATGCAAACCATTTGCACATTTTGTAAATATAGATACGTTGTCTTTTAGATGGTCACTTGCGTTTTATGACGAGCTCCCCCCCCCCTCACCGTACTGTCCAGGTCAGTTTTGATTACGTCTGTGTATACGATCTGCAGCCAAGCAACGGTTTTAAAAAGTACATGACGTGCCTTTTGATGGTTATTACTAGACCGCTTATTGTACCTGCCCTATTGATCAACCGGACCTAGTGCCAGAGAGAATTGTTAGTTGAGATCTCGTACTTTGCTCGAAGGATAATGCTTCTTATAACATTTACTGTAAAGGTAAAACAGTAATTGTATGTGTTGGACTTAGTGGTGATGGTTAAAACATATGTCTCTTAATGCTGTTGTGGACATGTTTAGCGAAGGCTTTTAGTGGGGTAAAATGCAGCATATGAAAGATTCTGCTTCTTTGTGGCAGCGGCCTTGTTCTGCTCGTATTAGAGTCAGGCTTATTTTGAGTATGTTGTCAACTGTTTCCTTCCTTTCATTGGTTGTCATGTATACACCGAGGGATCTTGACAACCAACATAAATAGCCTCTGTAAATGGTCTTCTTTTTAAATTGGTTTGTCCCAAAACGGTTAATGGAACTGTAAATACGATAGCTGAAAGGAAGATGTGTTATGGGCATGAGAAAATGTCCTTGTGTCTCTTTTAACCCAACATCGAATGTCTCCGTTGTCAAATCTGCATTTTGCATTCATGTGTATCCATTATGACTTTTCTTTTTCAATCTCAACCTTGTTTTAAGCCAATCATGGAAAAGCTAAAGCAGCGATTGTTATGGGACTAAATTATGACTGTAcaaaaaattatacattttgttttcacAGTTGCAGACAATTTAAAGGGGATATAACTTTATTTTTCAATAAACCTTTTTCTGTGACAACTGG

Function

NR:

description
alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A-like

GO:

id name namespace
GO:0006487 protein N-linked glycosylation biological_process
GO:0030144 alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K00744 MGAT5; alpha-1,3(6)-mannosylglycoprotein beta-1,6-N-acetyl-glucosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608927.2 True 6034 mRNA 0.50 17 24997922 25115994

Neighbor

gene id symbol gene type direction distance location
LOC110527559 plcc coding upstream 95352 24872421 ~ 24902570 (+)
pdxkb LOC106574311 coding upstream 127011 24837284 ~ 24870911 (+)
LOC110527557 pknx1 coding upstream 177618 24811375 ~ 24820304 (+)
itsn1 LOC100286499 coding upstream 197478 24738197 ~ 24800444 (+)
setd4 setd4 coding upstream 265024 24723626 ~ 24732898 (+)
LOC110527563 alg11 coding downstream 83172 25199166 ~ 25278853 (+)
spp2 spp2 coding downstream 87126 25203120 ~ 25213611 (+)
LOC110527567 LOC106575093 coding downstream 185806 25301800 ~ 25312514 (+)
LOC100136274 LOC100136274 coding downstream 199206 25315200 ~ 25321925 (+)
mdh1b mdh1b coding downstream 221417 25337411 ~ 25341310 (+)
G589105 NA non-coding upstream 9442 24988010 ~ 24988480 (+)
G589081 NA non-coding upstream 29544 24968173 ~ 24968378 (+)
G588766 NA non-coding upstream 71789 24925931 ~ 24926133 (+)
G588765 NA non-coding upstream 73692 24923649 ~ 24924230 (+)
G588764 NA non-coding upstream 75343 24922277 ~ 24922579 (+)
G589207 NA non-coding downstream 50912 25166906 ~ 25169031 (+)
G589211 NA non-coding downstream 58446 25174440 ~ 25174835 (+)
G589214 NA non-coding downstream 60443 25176437 ~ 25196803 (+)
G589220 NA non-coding downstream 72365 25188359 ~ 25194730 (+)
G589224 NA non-coding downstream 81975 25197969 ~ 25198258 (+)
G588755 NA other upstream 92341 24904331 ~ 24905581 (+)
G587660 NA other upstream 1189922 23807722 ~ 23808000 (+)
LOC110527540 LOC106533352 other upstream 1376553 23609520 ~ 23621369 (+)
G586685 NA other upstream 1982802 23010061 ~ 23015120 (+)
LOC110527523 stat1-2 other upstream 2294101 22684527 ~ 22722539 (+)
G589734 NA other downstream 487611 25587088 ~ 25608606 (+)
G589933 NA other downstream 887936 26003930 ~ 26025309 (+)
G590936 gart other downstream 1436560 26552554 ~ 26553542 (+)
G590949 LOC106575121 other downstream 1461413 26577407 ~ 26577933 (+)
G592134 NA other downstream 2367056 27483050 ~ 27483796 (+)

Expression


Co-expression Network