LOC110527562 (tm163)


Basic Information

Item Value
gene id LOC110527562
gene name tm163
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 25121268 ~ 25164357 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608930.2
CAGATGTTGTTCATTACGCGCAGCGGAGTCGAACCGGGAACTGTTGTAGCGTGGCAAACATGTCTACAGTCTCCAGTGTTCACTGATAAGCAGACTTGACATGGACATGGGTACGGATTCCACACAACCCAGAGGCCTCGTTAAATAAACTAGATTCGTAATTAGAGTCCTCTTGCTGCTGTCTTCGCACTCGACTTCGAATTCATGACTGGCATGGGGGCACGGTATTGATCTACAGAAGCCCACTCCGCCGGCCGCAACTCAACGCTTGAGGACGGAACTTCGCGCGTTGGTGTGAGACTTTTGGAGTTGCCTAATTGGAACCGCAATTTAGAGCAATGACGGACTCTACAGCCTCAGACCCGGTGAGCACCATCCCGGATCCAACTATTGTTGATCCGTCGACTGTGAACGGCCAGTTCGACCCGACAGATCAACAGCCACCCAAAAGAGCAAGTCAGGGGGAACCTAAATTCAAGATGGACCAGGAGATGAAGATTAGCGATAGCGTGGAGGGGCAAGGCTTACTGGAGAGCAGCATGAGGCTGAAGCCCCACGAAGCTCAAAGCTACCGCAAGAAAGCATTGTGGGTCTCCTGGGTTTCCATCGTTGTGACGCTGATCCTGGCAGTAGCAGCTTTCAcgGTTTCCTTCATGAGACACAGTGCCTCGGCTTTCGGATTCGCTTTTGATGCCGCCCTGGACGTGCTGTCCTCCATCATCGTGGTGTGGCGCTATAGTAACGCCGCCGCCGTTCACTCTGCACACAGGGAGTACATagccTGCGTGATCCTGGGGGTGGTCTtcatcctgtcctctctgtgtatCCTGGGAAAGGCAATCCATGACCTGGCTACCAACCTACTGCCTGAAGTGgatGACTTCCTCTTCAGTGTTTCCATCGTCAGTGGTGTGATGTGTATCATTCTGTCCGTGTTCAAGTTCATGCTGGGCAGGGTGCTCACCAGCAGAGCCCTCATCACAGACGGTTTCAACTCCCTGGTGGGCGGGGTCATGGGCTTCTCCATCCTAATCAGTGCCGAGGTGTTCAAGCACGATCCCAAAGTCTGGTACCTGGACGGGTCCATAGGGGTCCTGATAGGCCTCATCATCCTGGCCTACGGAGTCAAGCTGCTGGTTGATATGGTCCCTCGAGTGCGACAGACGAGGAACTACGAGCGCTTTGAGTGACAGAAGACCACGGGAAGGGCAGCGAGGGCTCAGTGGGGGATGGGttctaggttatatacagtacgtGTACGTCCAGTGTCTGTTCTAGGATATGTATATCTACGCCCAGTCCCTATCCTGCTCAGCTCCATTCTTCCTGGTAGATCTCTCCAGTCACCATGACAAACCTATTGATTGATTTAGACCTCACTTGTGCCAGCCCAGTGGCATTTTAGTGAGACCCAAGTGGTCCATTCTGCAGcgttccccctgtctctctctgactccgaACCTGATCCGTCCATAGGAGTCATTACGAAGTCAAAGGGAAGACGGAGGAGGTTTCCCTCaatgtttctcctcctcctctgccgaAGCAGGGGGAGGCGGAAGGACAGACCGAAGAACGTGGCCTGCTGAGTCGTCAGGAAATTATGCCACTGCCGCTACAAAGGCACTGCACATTGTCCACTGATTACAGTCTGGTGTTCATATCTCTATCTCCACTTGGACAAGATGGCTGATTCAGATATGCATCTCAGTCCTTATGGGATTTCAATGGTTTCTAATAGGCTTTTTCTTTTGTTCAGTCTAATGTGTCCCCAATGGCACTCTatgccctttatagtgcactacttttgaccaccctattccctttatagcgcactacttttgaccggggcccataaaaagtgcactatgtaggaaatagggtggcatttggcacacacacacagcctatttCTGTTTATGACACCACTGCTCAAAGTAGATGTGTTGCGTTTATGTAGTCGTGATGTAGTAACAGGTAAAGTATATTTTAGGGTGGTAGTTGCTACTATTCGTAGCTATAGGGCATGTTTGCTATCCCCCAAAAAATCAGCAGGGGAAATTGATTTCTGAGATGCCCATTGTATTATCAATTGTAGACacaatagtatagtatagcagtaCACTGTGCAATAACAACATGACAGACGACTCTTATCAatggcttgtgtcccaaatggcaccctaatccctacatagtcactatgggtcctggtcaaaggtagtgcactatagggaatagggtaataTTTGGGACAAAACCTGTATCATTTGATTAGTGAATATGAAAGCACAAATGTCCCTGTCAACAACTCATGTATGGATTATGTGTTTGCTGTATTGTTTAAGAGGGCCACATTAAGGGGTGTTGAATAAAAGCCTGTGGCAGACCATCAACAGACAA
>TU672202
GAACCGGGAACTGTTGTAGCGTGGCAAACATGTCTACAGTCTCCAGTGTTCACTGATAAGCAGACTTGACATGGACATGGGTACGGATTCCACACAACCCAGAGGCCTCGTTAAATAAACTAGATTCGTAATTAGAGTCCTCTTGCTGCTGTCTTCGCACTCGACTTCGAATTCATGACTGGCATGGGGGCACGGTATTGATCTACAGAAGCCCACTCCGCCGGCCGCAACTCAACGCTTGAGGACGGAACTTCGCGCGTTGGTGTGAGACTTTTGGAGTTGCCTAATTGGAACCGCAATTTAGAGCAATGACGGACTCTACAGCCTCAGACCCGGCTTACTGGAGAGCAGCATGAGGCTGAAGCCCCACGAAGCTCAAAGCTACCGCAAGAAAGCATTGTGGGTCTCCTGGGTTTCCATCGTTGTGACGCTGATCCTGGCAGTAGCAGCTTTCATTTGATGCCGCCCTGGACGTGCTGTCCTCCATCATCGTGGTGTGGCGCTATAGTAACGCCGCCGCCGTTCACTCTGCACACAGGGAGTACATagccTGCGTGATCCTGGGGGTGGTCTtcatcctgtcctctctgtgtatCCTGGGAAAGGCAATCCATGACCTGGCTACCAACCTACTGCCTGAAGTGgatGACTTCCTCTTCAGTGTTTCCATCGTCAGTGGTGTGATGTGTATCATTCTGTCCGTGTTCAAGTTCATGCTGGGCAGGGTGCTCACCAGCAGAGCCCTCATCACAGACGTTTCAACTCCCTGGTGGGCGGGGTCATGGGCTTCTCCATCCTAATCAGTGCCGAGGTGTTCAAGCACGATCCCAAAGTCTGGTACCTGGACGGGTCCATAGGGGTCCTGATAGGCCTCATCATCCTGGCCTACGGAGTCAAGCTGCTGGTTGATATGGTCCCTCGAGTGCGACAGACGAGGAACTACGAGCGCTTTGAGTGACAGAAGACCACGGGAAGGGCAGCGAGGGCTCAGTGGGGGATGGGttctaggttatatacagtacgtGTACGTCCAGTGTCTGTTCTAGGATATGTATATCTACGCCCAGTCCCTATCCTGCTCAGCTCCATTCTTCCTGGTAGATCTCTCCAGTCACCATGACAAACCTATTGATTGATTTAGACCTCACTTGTGCCAGCCCAGTGGCATTTTAGTGAGACCCAAGTGGTCCATTCTGCAGcgttccccctgtctctctctgactccgaACCTGATCCGTCCATAGGAGTCATTACGAAGTCAAAGGGAAGACGGAGGAGGTTTCCCTCaatgtttctcctcctcctctgccgaAGCAGGGGGAGGCGGAAGGACAGACCGAAGAACGTGGCCTGCTGAGTCGTCAGGAAATTATGCCACTGCCGCTACAAAGGCACTGCACATTGTCCACTGATTACAGTCTGGTGTTCATATCTCTATCTCCACTTGGACAAGATGGCTGATTCAGATATGCATCTCAGTCCTTATGGGATTTCAATGGTTTCTAATAGGCTTTTTCTTTTGTTCAGTCTAATGTGTCCCCAATGGCACTCTatgccctttatagtgcactacttttgaccaccctattccctttatagcgcactacttttgaccggggcccataaaaagtgcactatgtaggaaatagggtggcatttggcacacacacacagcctatttCTGTTTATGACACCACTGCTCAAAGTAGATGTGTTGCGTTTATGTAGTCGTGATGTAGTAACAGGTAAAGTATATTTTAGGGTGGTAGTTGCTACTATTCGTAGCTATAGGGCATGTTTGCTATCCCCCAAAAAATCAGCAGGGGAAATTGATTTCTGAGATGCCCATTGTATTATCAATTGTAGACacaatagtatagtatagcagtaCACTGTGCAATAACAACATGACAGACGACTCTTATCAatggcttgtgtcccaaatggcaccctaatccctacatagtcactatgggtcctggtcaaaggtagtgcactatagggaatagggtaataTTTGGGACAAAACCTGTATCATTTGATTAGTGAATATGAAAGCACAAATGTCCCTGTCAACAACTCATGTATGGATTATGTGTTTGCTGTATTGTTTAAGAGGGCCACATTAAGGGGTGTTGAATAAAAGCCTGTGGCAGACCATCAACA

Function

NR:

description
transmembrane protein 163-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608930.2 False 2403 mRNA 0.49 8 25121268 25164357
TU672202 True 2166 lncRNA 0.49 7 25121273 25164327

Neighbor

gene id symbol gene type direction distance location
LOC110527560 LOC106575088 coding downstream 155937 24915977 ~ 24965331 (-)
LOC110528817 LOC106575139 coding downstream 297781 24821195 ~ 24823487 (-)
cryzl1 LOC106575083 coding downstream 383272 24732997 ~ 24737996 (-)
cbr1 cbr1 coding downstream 397645 24721469 ~ 24723623 (-)
LOC110527556 LOC106575147 coding downstream 410108 24709221 ~ 24711160 (-)
LOC110527565 LOC106575142 coding upstream 50862 25215219 ~ 25290844 (-)
fastkd2 fastkd2 coding upstream 162778 25327135 ~ 25337360 (-)
retreg2 LOC100380703 coding upstream 182039 25346396 ~ 25358486 (-)
LOC110528818 NA coding upstream 194550 25358907 ~ 25361270 (-)
cnppd1 LOC106575101 coding upstream 199084 25363441 ~ 25371970 (-)
G589499 NA non-coding downstream 23368 25096410 ~ 25097900 (-)
G589488 NA non-coding downstream 41392 25079050 ~ 25079876 (-)
G589059 NA non-coding downstream 176129 24944921 ~ 24945139 (-)
G589058 NA non-coding downstream 178532 24942514 ~ 24942736 (-)
G589543 NA non-coding upstream 9031 25173388 ~ 25173628 (-)
G589530 NA non-coding upstream 24378 25188735 ~ 25192468 (-)
G589556 NA non-coding upstream 33570 25197927 ~ 25198249 (-)
G589558 NA non-coding upstream 34785 25199142 ~ 25200889 (-)
G589525 NA non-coding upstream 38762 25203119 ~ 25214524 (-)
G589093 NA other downstream 142161 24971613 ~ 24979107 (-)
G588987 NA other downstream 292568 24828488 ~ 24828700 (-)
G587242 NA other downstream 1743567 23375012 ~ 23377701 (-)
LOC110527533 s100b other downstream 1956059 23161894 ~ 23165209 (-)
G586878 NA other downstream 2034131 23084490 ~ 23087137 (-)
G589529 NA other upstream 37049 25201406 ~ 25278874 (-)
G589705 NA other upstream 380378 25544735 ~ 25545418 (-)
G590443 NA other upstream 993636 26157993 ~ 26158305 (-)
LOC110527590 LOC106575121 other upstream 1413812 26575613 ~ 26585525 (-)

Expression


Co-expression Network