LOC110527563 (alg11)


Basic Information

Item Value
gene id LOC110527563
gene name alg11
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 25199166 ~ 25278853 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110527563
ATAAAGGATAATGAGTAAAAGGGGGACTTAAATTTCACACCATTTTCTTTTATTCTGTTTTTAAATGAGCTGTTGTTCTCTTTTGACATGAGGGTTTTAAGTTTCTAGGTGGCTGGTAGCCAATCTAGTACATAGTGGGATCGAATGGAGGACATGAAGGTGTTTTAAACTTTGTAACTGTTATATGATTCATTGCTGAATTTTGCCTATATGCCTATCCTCAATTGGGTATGTCCGCATATGTTTCGAAAAGCCATGATTATTTACGTTTTTAACGTTAAAACACAGCGTCGGTATTGTAGTTCACATGGGGCCAATGGTGGGCGAATATAACCGCTGAAAACCCCCACGTACAGAGAAGGTTTTTTCGAAAGCTAGCTTGTAGTATTGATCATCTGTTTTGACAGGGTTCCTGGGCCTTGTTCAGTAGTAACGTTGCAGGTAGAAATGTCATGAATAGAGCTGCTATAGCTCATATATGGctctggccatataccacaccccttcgggccttattgcttaatgatAATATTCCTAGCTATAGGATCGTACTACAGATTGCTCAGTGCATTCAGCATGAAGAAGTTACTTTGGGGGCTTATCTACCGAATCTCAGCTTGCTACCCATCTGTCAAGCATTATGTTGATTAGAATGTTGACATGGTATGAAAAAACCCATATCCAACAGTAATTTGTTGCCGTGTTGATTAGGCACCAAAGAGAAGAAAACGGATTGGAACGGCCATTTTAGTTTCCCCTTTGTGTAACATTTTCTGTTATGGGCCCTAATGAACATCTCCCAGTCTTCCACATTAATTCACCCACTTGGGTCATATTCAGTAGGAACCAAATGGATGCAAACAGACCCACAGGGGAGGGAAGTACTACCAACTGGGAGGGACTACCGGAACTTGTCCAATAAACGATTGTTTTAGTTGCAAAACGTTATCCATTGCAAAAGGGTTTGCTACTGTATGCAATAATAAATATGGTCTTCTCCATGTCCCAGGTACCAAGATGTCAACTATATGGTGTACACAggcgaccagggtgtgacagatcaGCAGATTTTTGATGGCGCTTCAACATCCTTCTACCTCGACCCGTCCAGTTTGTCTTCCTCAAACACCACCTATTGGTCGAGGCCAGCCTCTTCCCCCCAATTCACTCTGATTGGTCAGAGTGTAGGCTCAATCTTCCTTGGCTTGGAAGCCCTTACGGAGTTTGTCCCAGGTGTCTACATCGACTCCATGGGTTACGCCTTCACTCTGCCTGTGCTTAAATACCTAGGGGTTTGTCACGTGGCTGGCTACGTGCACTACCCCACCATCAGCACAGACATGCTGTCGGTGGTGCGTGAGAGGAACCGCAGGGAGTCGCTGAGGTTGGTGCTGATTGGTGGATGCCGGAACCAAGAGGATGAGGATAGGGTGTTGATTTAAACTCAACGTGCCGTTTGAGGAGCTGAAGAGGGAGTTGGGGGAAGCTACGGTGGGACTTCACACCATGTGGAACGAACACTTCGGGATAGGGCTGGTGGAGTGCATGGCGGCTGGGACCGTCATCCTGGCTCACAGGTCTGGAGGCCCCAGGCTGGACATTGTGGTGCCCTATGATGGAGACCAGACGGGCTTCCTGGCCGAGGATGAGGATGGCTACGCAGACGCCATTGAGCGGATCCTGGCCCGTCACCCTCGGCCCGTCTGGAGATCCGACGCCACGCTTGCCTCTCAGTCACTCGCTTCTCCGACCAGGAGTTTGAGGCCTGCTTCCTGGCTACCATGGAGCCTCTCATATGGACACTGGCGCGATGAGGGGTATGGGTGggggagtgtgcgtgtgtgtgtgtcacaggctcatgggtgtgtgtgttggtggttgaGGGACTAAAACTCATGCTTGTACTGCCATGGCACATTTTGGCATACTAGCCACTCCTTTAGTTGACATAGGAGACCGTTTGTGTTAAAGTGCACAAGAAAATACGTTGACTTAAATTAGAGCTGCATTTATTGACATGTCAGTCCAGGTGTCCACTCTCTTTCTAGAGGGTCTTGTTATATGTTTAGTATTTATGTTTTCTAGACCCCGTTCCATTTTTTCCAATGTATTTGTACTTGAGGCACAACATTTTTAGTGTTCCGTCTAACCTCCTTCATGTTCCCAGTCTCAATTTTGAACGCATACAGAGAGCCGGCTGGTAGACTAGATTAGTGCTGGTCTAGCAAGGACTGGACACAACTGTGTTTTTGATGGTATTCCAGGTTGGCTTTTTGCAGTCAAACTACAAATCTCAGAAGATTGTTATAATAAGATGGGGTGCTTACATTTAGTCTTATTTCACACGGGTGAATTGGAAATGGTTTATTTTTCATACCCGCTCAGTCAGGGATCCGCAATTTCTGATCCCTGCCTGACTGATTGGGATATGAAAAATAAACCTTTTCCAATTCACCCATGTGAAACACAGGAGCAATTGCCTTGCTCACgggcacatcaacatatttttcacctcGTTGGCTAGGGATTTAAACCAGCGACCTCTGCTACCGGCCCAACGCTCCTTACCGCtaggctacatacagtgttgATGTGAAAAACACTTCTCTAGGCATTGTGAGATCTGATCTCTTCTAGAAATACCCGTTTTGTATCCTATTTTTTTTAGATTATAACATTTATAAAATACATTGTTGTGATCTTTAGTGCAATGATAAATGATCAACAAGCATTTGAGCACAATAAACATGTGGATGACAGTCAGTGTTTCAGCTTGAATGATTCCCTGGGAAACTGACATTTTGTCCTATTTTCACCATGTAAAAACATGAATGGGACAATCAGAAAACAACTGTTGTACCGGTCTTCTTGCAAGCAGACTTGTCTGTTTTTGCTAGCACTGCCTTCGCTTACGGCGGCTTTTTTGAAGGTTTTACTTGCAATTATTGTGATATGTAGTTGTTTGCACTGATTTGTAAGATTGTACgtgcgtctgctaaatgactgaaaagTTAAATGAACATGTGGCAAGTTTAGTTCCAGGAAGAAGACCACTTCAAAGTAATGAGATTTCAGCCTGTAGGTCAATACTGTTGGCATTGAAATAAACCCAAAGCACTAAGGTCAGTCAGTGC
>TU671944
TATGGGTGggggagtgtgcgtgtgtgtgtgtcacaggctcatgggtgtgtgtgttggtggttgaGGGACTAAAACTCATGCTTGTACTGCCATGGCACATTTTGGCATACTAGCCACTCCTTTAGTTGACATAGGAGACCGTTTGTGTTAAAGTGCACAAGAAAATACGTTGACTTAAATTAGAGCTGCATTTATTGACATGTCAGTCCAGGTGTCCACTCTCTTTCTAGAGGGTCTTGTTATATGTTTAGTATTTATGTTTTCTAGACCCCGTTCCATTTTTTCCAATGTATTTGTACTTGAGGCACAACATTTTTAGTGTTCCGTCTAACCTCCTTCATGTTCCCAGTCTCAATTTTGAACGCATACAGAGAGCCGGCTGGTAGACTAGATTAGTGCTGGTCTAGCAAGGACTGGACACAACTGTGTTTTTGATGGTATTCCAGGTTGGCTTTTTGCAGTCAAACTACAAATCTCAGAAGATTGTTATAATAAGATGGGGTGCTTACATTTAGTCTTATTTCACACGGGTGAATTGGAAATGGTTTATTTTTCATACCCGCTCAGTCAGGGATCCGCAATTTCTGATCCCTGCCTGACTGATTGGGATATGAAAAATAAACCTTTTCCAATTCACCCATGTGAAACACAGGAGCAATTGCCTTGCTCACgggcacatcaacatatttttcacctcGTTGGCTAGGGATTTAAACCAGCGACCTCTGCTACCGGCCCAACGCTCCTTACCGCtaggctacatacagtgttgATGTGAAAAACACTTCTCTAGGCATTGTGAGATCTGATCTCTTTTGTGGTGTGTAtttactgacatgtatgtgtaactgacagATGCAAACGCACAACACATGTTCATGATTTGAAATGCATGTCAATTGTGAAGTCTTTTGTCTGTTATGTCGTTTTCGTGTCGGACCCCAGCTGGACTAGCTGTCGGGGATCCTAAgaaatggggatcctaataaacggggatcctaataaacggggatcctaataaaataaaaaccactCCCATCCGTATGCACCTTTGCAATATCTGGGAAGTGAAAGCTTTTCTACAACAGATGTGAAGAGAGTAATGTGTGTAATGCATCTTTTAAAATAGGTCATATTTACCTGGGCCTGGAAAGCAAAGAACGTGAAGGCAAGTTGTATATCTTTAATGGATAATGCAGGTTTTCTATTCTATACTGTCCGAGCCCAGTCTCAGCTCATAATATACAGGCTATACTATAAGAGAATCAGTGGACAAAACTAAATCTTTGAACAGACGAGAGGATTTTGTCACCCACCATCTAAGATTCTGAACTCGTTTCTGTAGT

Function

symbol description
alg11 Predicted to enable GDP-Man:Man3GlcNAc2-PP-Dol alpha-1,2-mannosyltransferase activity. Predicted to be involved in oligosaccharide-lipid intermediate biosynthetic process and protein N-linked glycosylation. Predicted to be located in endoplasmic reticulum. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Ip. Orthologous to human ALG11 (ALG11 alpha-1,2-mannosyltransferase).

GO:

id name namespace
GO:0009058 biosynthetic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110527563 False 3134 mRNA 0.42 3 25199166 25203003
TU671944 True 1346 lncRNA 0.42 2 25201688 25278853

Neighbor

gene id symbol gene type direction distance location
LOC110527561 LOC106575089 coding upstream 83172 24997922 ~ 25115994 (+)
LOC110527559 plcc coding upstream 296596 24872421 ~ 24902570 (+)
pdxkb LOC106574311 coding upstream 328255 24837284 ~ 24870911 (+)
LOC110527557 pknx1 coding upstream 378862 24811375 ~ 24820304 (+)
itsn1 LOC100286499 coding upstream 398722 24738197 ~ 24800444 (+)
spp2 spp2 coding downstream 117 25203120 ~ 25213611 (+)
LOC110527567 LOC106575093 coding downstream 98797 25301800 ~ 25312514 (+)
LOC100136274 LOC100136274 coding downstream 112197 25315200 ~ 25321925 (+)
mdh1b mdh1b coding downstream 134408 25337411 ~ 25341310 (+)
LOC110527571 LOC106575097 coding downstream 139708 25342711 ~ 25346307 (+)
G589224 NA non-coding upstream 908 25197969 ~ 25198258 (+)
G589214 NA non-coding upstream 2363 25176437 ~ 25196803 (+)
G589220 NA non-coding upstream 4436 25188359 ~ 25194730 (+)
G589211 NA non-coding upstream 24331 25174440 ~ 25174835 (+)
G589207 NA non-coding upstream 30135 25166906 ~ 25169031 (+)
G589234 NA non-coding downstream 30905 25233908 ~ 25234447 (+)
G589239 NA non-coding downstream 37573 25240576 ~ 25241673 (+)
G589245 NA non-coding downstream 51252 25254255 ~ 25257164 (+)
G589252 NA non-coding downstream 69301 25272304 ~ 25310601 (+)
G589229 NA non-coding downstream 122546 25325549 ~ 25326636 (+)
G588755 NA other upstream 293585 24904331 ~ 24905581 (+)
G587660 NA other upstream 1391166 23807722 ~ 23808000 (+)
LOC110527540 LOC106533352 other upstream 1577797 23609520 ~ 23621369 (+)
G586685 NA other upstream 2184046 23010061 ~ 23015120 (+)
LOC110527523 stat1-2 other upstream 2495345 22684527 ~ 22722539 (+)
G589734 NA other downstream 400602 25587088 ~ 25608606 (+)
G589933 NA other downstream 800927 26003930 ~ 26025309 (+)
G590936 gart other downstream 1349551 26552554 ~ 26553542 (+)
G590949 LOC106575121 other downstream 1374404 26577407 ~ 26577933 (+)
G592134 NA other downstream 2280047 27483050 ~ 27483796 (+)
LOC110528820 LOC106575143 coding downstream 488374 25767227 ~ 25769101 (+)
G589292 fastkd2 non-coding downstream 54303 25333156 ~ 25335529 (+)
G589305 NA non-coding downstream 80054 25358907 ~ 25359795 (+)
G589330 NA non-coding downstream 120945 25399798 ~ 25400173 (+)
G589339 NA non-coding downstream 127857 25406710 ~ 25406984 (+)

Expression


Co-expression Network