spp2 (spp2)


Basic Information

Item Value
gene id spp2
gene name spp2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 25203120 ~ 25213611 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124398.1
TAGACAGAAGATGAAGTGGTGTGTTCTCATGCTGGCCTTGCTGCAGTCTTTGTGCTGCTCAGGCTTGCCCTTGTACCAGTCAGAGTTGGCGTCCACGGCAGACAAGGCTCTCGTCGTGACCATGACCCAAGTCAACAATCTGTACGCTGGCCTTCGTCTATACCGAGTCACCCGTGGCTCTATCAAAAGGGTTGTTCCTTTGGGATTGAACACTTATGACCTGATGATGAACTTTGGGATCAAGGAGACGGACTGTCTGAAGAGCTCTGGAGAAGACCCACAGAGATGTGCTTTCAGAGTGGGCTTCTTTGTGccGGCCGCCTCCTGCACCGCACGTGTTCGTGTCACTGCAGAGCTCACTCAGGTTGTGTCCCTGAACTGTGGCCAGGACAGCTCCAGCTCCGAGTCCAGTAGtgaagagAACTTCACGAGGAAGAGGCAGCAGTTGAACGTGCAACCATCTGGGAACAGGGGCCCTGTCCTGCCTGGCTTCTCTGAGGCCACTCTCTTTCCCAGCCACTCTTTCTCCAGACAAGTGGAGCCTCAACCGATCCCAAGGGGCGACAGCATCGGCAACCACCTGGAGTGACTTCAATGATGTGAAAAGTTACGAGTGTTGCAGATAAAATAGGGAATTGTCAGCTCTATACAGTACAATTCTGAATGACAACCATATCTGTTATACAccatacatttctatctgaatgtgACATTCTCCTTATCAGGCCCTGACAGTACTCGTTGGAAAACAGGGAGGTTCTGATAGTGGCGCTGGAACCTAAGAGATAATTTCCAATTAAATTGATTACTCTTGTC

Function

symbol description
spp2 Predicted to act upstream of or within bone remodeling. Predicted to be located in extracellular region. Is expressed in cranium.

NR:

description
secreted phosphoprotein 24 precursor

GO:

id name namespace
GO:0046849 bone remodeling biological_process
GO:0005576 extracellular region cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124398.1 True 816 mRNA 0.50 6 25203120 25213611

Neighbor

gene id symbol gene type direction distance location
LOC110527563 alg11 coding upstream 117 25199166 ~ 25278853 (+)
LOC110527561 LOC106575089 coding upstream 87126 24997922 ~ 25115994 (+)
LOC110527559 plcc coding upstream 300550 24872421 ~ 24902570 (+)
pdxkb LOC106574311 coding upstream 332209 24837284 ~ 24870911 (+)
LOC110527557 pknx1 coding upstream 382816 24811375 ~ 24820304 (+)
LOC110527567 LOC106575093 coding downstream 88189 25301800 ~ 25312514 (+)
LOC100136274 LOC100136274 coding downstream 101589 25315200 ~ 25321925 (+)
mdh1b mdh1b coding downstream 123800 25337411 ~ 25341310 (+)
LOC110527571 LOC106575097 coding downstream 129100 25342711 ~ 25346307 (+)
LOC110528820 LOC106575143 coding downstream 553616 25767227 ~ 25769101 (+)
G589224 NA non-coding upstream 4862 25197969 ~ 25198258 (+)
G589214 NA non-coding upstream 6317 25176437 ~ 25196803 (+)
G589220 NA non-coding upstream 8390 25188359 ~ 25194730 (+)
G589211 NA non-coding upstream 28285 25174440 ~ 25174835 (+)
G589207 NA non-coding upstream 34089 25166906 ~ 25169031 (+)
G589234 NA non-coding downstream 20297 25233908 ~ 25234447 (+)
G589239 NA non-coding downstream 26965 25240576 ~ 25241673 (+)
G589245 NA non-coding downstream 40644 25254255 ~ 25257164 (+)
G589252 NA non-coding downstream 58693 25272304 ~ 25310601 (+)
G589229 NA non-coding downstream 111938 25325549 ~ 25326636 (+)
G588755 NA other upstream 297539 24904331 ~ 24905581 (+)
G587660 NA other upstream 1395120 23807722 ~ 23808000 (+)
LOC110527540 LOC106533352 other upstream 1581751 23609520 ~ 23621369 (+)
G586685 NA other upstream 2188000 23010061 ~ 23015120 (+)
LOC110527523 stat1-2 other upstream 2499299 22684527 ~ 22722539 (+)
G589734 NA other downstream 389994 25587088 ~ 25608606 (+)
G589933 NA other downstream 790319 26003930 ~ 26025309 (+)
G590936 gart other downstream 1338943 26552554 ~ 26553542 (+)
G590949 LOC106575121 other downstream 1363796 26577407 ~ 26577933 (+)
G592134 NA other downstream 2269439 27483050 ~ 27483796 (+)

Expression


Co-expression Network