LOC110527567 (LOC106575093)


Basic Information

Item Value
gene id LOC110527567
gene name LOC106575093
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 25301800 ~ 25312514 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608933.2
tgtctctgtgaTAATATCAGAGTTTTCCTGACAGTCTGTCGCAGGAGACAGTCACATAGCAACAGAGAAACCTGGGTGAGTCTCTGCGAGTTTTACCAGAAGCAGTGAAATATGATATGGAGGAGAAAATCAAAAGATGAGTAATACGATACGAGGTTCCAAGCCCATCAAAGGTCACACACCGGTAGAGGGTGGAAACTTATGAAGTTCAGAGTGCGGATGTTTTTTTTACTGAAGAGTCCGTGCAGTCAGTCACCCTGTTAGATGTGCAGCAGAGAGAGTTGCTTACAGTCGACGAGGGCCAGATTGTTGTTCACAGTGACAGGTGACAGGGAAGGATGTTATGAGATGCACGCTGTCATCGTGTGACGAGCATGTGTTGTATGTTTAGGTAGAGCAGAGCAGTCACTGTCTCGTTCTGTTTGACATACAGTGTCTTGTCACATTTACCCTGATTGTTGTGCACTGTAAAGGGAGATCAGGGGAGCTTCAGTTTCACAACAAAACTGAGAACTTTCAAGATGAACGTTTACTGGATACCCAcgatcctcctctccctctccagtgcTGCCAACATGATAAGCTCAAACAACTGTAAAGACAAGCTCAGAATGTTCAATGTGGTCCGTGTGTCTGTCAACGGCACTGCATCTGTCAGCTGCCCCAACCTGACAGGCAAGGACCAGGAGGAGATGAGATTCCACCTTTACCTGGGCTTGGTCGAGGTTGGCAACCACACTCACGACAATGGTCACAACCACAACTCCACAGAGACAGTGAGTCCTGTTGGGGAGGGTCTGGGGCTGAGGGTGAACGAACAGGACCATACGGTCAGTTTTGTCCTCTCTGGAATGACCACGGAGCGCGCTGGAGTCTATACATGTGAGGGGCAACCCATGTGCCCACCTCCCATTGAGAAATTACCAGACGAGACTCAGACCTTGGTCCTGGTTGAAGCTCTCCAGTGCCAGGAAATGAAGATTGGGGTATGTGCAGGCTCTGCTTGGACATGGGTACTGGGGTTCTGGGTCACCATCATCTATGGCCTGGCTGTCACTGTCATCGCCTTTGCCATCCGGCTCAGACTGAGGAGAGTGGAGTGTTCCCAGAGCGACGACATGAACATCAAACCCAAAGCTCCACTCAGGTGGCCCAGGAAGAAGCAGGGGGTCCAGCATCCAATCCGAATGGGACGATACTGATCACTGTCATCCTCAGATCAGAGTTGAGCCACAATTTGCCTTTGAGAGCTGACTTCTGAAACACACCAAGTTCTCTGTGTAAGCCAGTTCGTCAAGTCACATGGTATACATCTAATTGTACAACTGATTGCGTGTAAATAAAGTTTTGAGTTATCTTATAAATGTAAATCAAATAATTGATGTAATATGATCTTCCGGGAATCTATTGAGAATGGACTCTTGAAGTTGTGGGCAGCATACCCcccaaacaacaacaaataatacGAAATGAATGTTCATCTCTCATATCCTCATGCATACTGTAGtcaacgcgcacacacacacaggttaagcTTATAGACAcagggtgtcacgttctgaccatcgttcttgtgtcttttccttgttttagtgttggtcaggacgtgagctgggtgggcattctatg

Function

NR:

description
T-cell-specific surface glycoprotein CD28-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608933.2 True 1629 mRNA 0.48 4 25301800 25312514

Neighbor

gene id symbol gene type direction distance location
spp2 spp2 coding upstream 88189 25203120 ~ 25213611 (+)
LOC110527563 alg11 coding upstream 98797 25199166 ~ 25278853 (+)
LOC110527561 LOC106575089 coding upstream 185806 24997922 ~ 25115994 (+)
LOC110527559 plcc coding upstream 399230 24872421 ~ 24902570 (+)
pdxkb LOC106574311 coding upstream 430889 24837284 ~ 24870911 (+)
LOC100136274 LOC100136274 coding downstream 2686 25315200 ~ 25321925 (+)
mdh1b mdh1b coding downstream 24897 25337411 ~ 25341310 (+)
LOC110527571 LOC106575097 coding downstream 30197 25342711 ~ 25346307 (+)
LOC110528820 LOC106575143 coding downstream 454713 25767227 ~ 25769101 (+)
LOC110527576 LOC106575106 coding downstream 491036 25803550 ~ 25874508 (+)
G589245 NA non-coding upstream 44636 25254255 ~ 25257164 (+)
G589239 NA non-coding upstream 60127 25240576 ~ 25241673 (+)
G589234 NA non-coding upstream 67353 25233908 ~ 25234447 (+)
G589224 NA non-coding upstream 103542 25197969 ~ 25198258 (+)
G589229 NA non-coding downstream 13035 25325549 ~ 25326636 (+)
G589292 fastkd2 non-coding downstream 20642 25333156 ~ 25335529 (+)
G589305 NA non-coding downstream 46393 25358907 ~ 25359795 (+)
G589330 NA non-coding downstream 87284 25399798 ~ 25400173 (+)
G589339 NA non-coding downstream 94196 25406710 ~ 25406984 (+)
G588755 NA other upstream 396219 24904331 ~ 24905581 (+)
G587660 NA other upstream 1493800 23807722 ~ 23808000 (+)
LOC110527540 LOC106533352 other upstream 1680431 23609520 ~ 23621369 (+)
G586685 NA other upstream 2286680 23010061 ~ 23015120 (+)
LOC110527523 stat1-2 other upstream 2597979 22684527 ~ 22722539 (+)
G589734 NA other downstream 291091 25587088 ~ 25608606 (+)
G589933 NA other downstream 691416 26003930 ~ 26025309 (+)
G590936 gart other downstream 1240040 26552554 ~ 26553542 (+)
G590949 LOC106575121 other downstream 1264893 26577407 ~ 26577933 (+)
G592134 NA other downstream 2170536 27483050 ~ 27483796 (+)

Expression


Co-expression Network