mdh1b (mdh1b)


Basic Information

Item Value
gene id mdh1b
gene name mdh1b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 25337411 ~ 25341310 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608937.2
AATTAAAATAACACCCCTGGTTTCCTAGCAACAACTGACATCCGGCCAACAAACATGGCAAAATTTGTACTTGCTGGTAAGGCAAATTGCCCGTACTTTGCCAAAGCTGAACTTCTTGCAGATTTACTGCAAAGATCTCTGCCAAAGTTCAGCATCCACAAGCTCTGCATGCACCCCAATGAGTGGCAGCAATGGCTGGAAACCACTTGCAAGGAAAATGGCTGGCAGCATGAGCATTCTCCCATGATATGGAGGGAACTGATCAACCGTGGGGGTAAAGGAATGCTTCTAGGGGGCTTCAGCGACTTCCTAGAACATGTACAGGCTTACTATGGCATCACCTCAGATATGACGACGGAACTGATGATGAAGATTGCAACAGAGAACCTGCTGACACGGGAGCTgtgcatgaaggaggaggtgtacCATCAGAGCCTCATCAAGCCACTGCACATATGGATCAGCAGTGCTCTTAACCCGACCTGCTACATCCTGATCCCCCAGCTGTTTGCCCCTGGGGTATTCCGGGACGCCCCAACCATCAGCCTCCACCTGTTGGATGTGGGGGCCATCGAGGAGGACCTGCAGGGGGTCAGGATGGAGACAGAGGACCTGGCCCTCCCACAGCTCCATAAAGTCACTGTCTACACAGAGCTGGACCAGGCCTTCCAACAAGCACACTTCATCATCCTCCTGGATGACAGTTGGCCTGAGTgtggaggggaggatgaggaagaaagCAAGgtGAGGAAGGTGTCGGAGCGTTACCAACAGTATGGGCGCCTTATCGACGAAAGGGCGCACAAGAACGTTGCGGTGATTGTGGCTGGGAACACCTTGGTTAACCTGAAGTGCTCCCTTCTGCTAGAGAACGCTCCCTCGGTTGACAGCGGACACTTTGTCGGCATGGCAACTCAACTGGAGTACGAAGCCAGAGCCCACATTGCACAGAAGCTATCTGTGAAGACTGCAGATGTGACAGATGTCATCGTTTGGGGTAACATCAGCGGCAGTTCCCATGTTGACCTGCAGAGGGCAAAGGTTTTCCAATACGAAGGGGCCATCTGGGGACCATTAGATTTTTCTCAGCCAGTCCTAAAGATGATATATGACAGGAAATGGCTACAGACTGACTTCCTGAATTTGGTCAGTTCCCAACGTGCCACTGTAGCCTCCAAGTCCCAGAGGGCCACAGCCATATCAGCCACTAATGGGATCATTGCAGTTCTAAAGGCCTGGAACTGCAACTCTTCTGCAGAGGAGGTCTTCTCCTTAGGCATACTCAGCACAGGACAGTACAACCTCCCAGCTGGTGTAGTCTTCTCAATGCCAGTGAGCTTCCAGGATGGTAGATGGTCCGTGTTGTCTGATGTCATCATTGGTGATGAGATGAGGGCCAAACTGCAGATTGCTGCAGACCAACTCAGGGAGGAGAAAGATCTTGCATCAAGGACAAGAAAAGACACTGCATGAATTTACACGACTTGCTGAAGCGCTTTCTGTCAGAGTTGTTTgttcaaaaaaaataaaaaatagtattTATACATTCATTTGCATATTAAAGGTTGAATGTATTTGATGACTAAA
>XM_021608938.2
CAATGGCTGGAAACCACTTGCAAGGAAAATGGCTGGCAGCATGAGCATTCTCCCATGATATGGAGGGAACTGATCAACCGTGGGGGTAAAGGAATGCTTCTAGGGGGCTTCAGCGACTTCCTAGAACATGTACAGATATGACGACGGAACTGATGATGAAGATTGCAACAGAGAACCTGCTGACACGGGAGCTgtgcatgaaggaggaggtgtacCATCAGAGCCTCATCAAGCCACTGCACATATGGATCAGCAGTGCTCTTAACCCGACCTGCTACATCCTGATCCCCCAGCTGTTTGCCCCTGGGGTATTCCGGGACGCCCCAACCATCAGCCTCCACCTGTTGGATGTGGGGGCCATCGAGGAGGACCTGCAGGGGGTCAGGATGGAGACAGAGGACCTGGCCCTCCCACAGCTCCATAAAGTCACTGTCTACACAGAGCTGGACCAGGCCTTCCAACAAGCACACTTCATCATCCTCCTGGATGACAGTTGGCCTGAGTgtggaggggaggatgaggaagaaagCAAGgtGAGGAAGGTGTCGGAGCGTTACCAACAGTATGGGCGCCTTATCGACGAAAGGGCGCACAAGAACGTTGCGGTGATTGTGGCTGGGAACACCTTGGTTAACCTGAAGTGCTCCCTTCTGCTAGAGAACGCTCCCTCGGTTGACAGCGGACACTTTGTCGGCATGGCAACTCAACTGGAGTACGAAGCCAGAGCCCACATTGCACAGAAGCTATCTGTGAAGACTGCAGATGTGACAGATGTCATCGTTTGGGGTAACATCAGCGGCAGTTCCCATGTTGACCTGCAGAGGGCAAAGGTTTTCCAATACGAAGGGGCCATCTGGGGACCATTAGATTTTTCTCAGCCAGTCCTAAAGATGATATATGACAGGAAATGGCTACAGACTGACTTCCTGAATTTGGTCAGTTCCCAACGTGCCACTGTAGCCTCCAAGTCCCAGAGGGCCACAGCCATATCAGCCACTAATGGGATCATTGCAGTTCTAAAGGCCTGGAACTGCAACTCTTCTGCAGAGGAGGTCTTCTCCTTAGGCATACTCAGCACAGGACAGTACAACCTCCCAGCTGGTGTAGTCTTCTCAATGCCAGTGAGCTTCCAGGATGGTAGATGGTCCGTGTTGTCTGATGTCATCATTGGTGATGAGATGAGGGCCAAACTGCAGATTGCTGCAGACCAACTCAGGGAGGAGAAAGATCTTGCATCAAGGACAAGAAAAGACACTGCATGAATTTACACGACTTGCTGAAGCGCTTTCTGTCAGAGTTGTTTgttcaaaaaaaataaaaaatagtattTATACATTCATTTGCATATTAAAGGTTGAATGTATTTGATGACTAAA

Function

symbol description
mdh1b Predicted to enable L-malate dehydrogenase activity. Predicted to be involved in NADH metabolic process; dicarboxylic acid metabolic process; and tricarboxylic acid cycle. Predicted to act upstream of or within carbohydrate metabolic process. Orthologous to human MDH1B (malate dehydrogenase 1B).

NR:

description
putative malate dehydrogenase 1B isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608937.2 False 1587 mRNA 0.50 10 25337411 25341310
XM_021608938.2 True 1376 mRNA 0.50 8 25337860 25341310

Neighbor

gene id symbol gene type direction distance location
LOC100136274 LOC100136274 coding upstream 15486 25315200 ~ 25321925 (+)
LOC110527567 LOC106575093 coding upstream 24897 25301800 ~ 25312514 (+)
spp2 spp2 coding upstream 123800 25203120 ~ 25213611 (+)
LOC110527563 alg11 coding upstream 134408 25199166 ~ 25278853 (+)
LOC110527561 LOC106575089 coding upstream 221417 24997922 ~ 25115994 (+)
LOC110527571 LOC106575097 coding downstream 1401 25342711 ~ 25346307 (+)
LOC110528820 LOC106575143 coding downstream 425917 25767227 ~ 25769101 (+)
LOC110527576 LOC106575106 coding downstream 462240 25803550 ~ 25874508 (+)
LOC110527578 LOC106575107 coding downstream 553419 25894729 ~ 25903497 (+)
LOC110527579 LOC106575110 coding downstream 580409 25921719 ~ 25934364 (+)
G589292 fastkd2 non-coding upstream 1882 25333156 ~ 25335529 (+)
G589229 NA non-coding upstream 10775 25325549 ~ 25326636 (+)
G589252 NA non-coding upstream 26810 25272304 ~ 25310601 (+)
G589305 NA non-coding downstream 17597 25358907 ~ 25359795 (+)
G589330 NA non-coding downstream 58488 25399798 ~ 25400173 (+)
G589339 NA non-coding downstream 65400 25406710 ~ 25406984 (+)
G589347 NA non-coding downstream 77145 25418455 ~ 25419032 (+)
G589358 NA non-coding downstream 90040 25431350 ~ 25431583 (+)
G588755 NA other upstream 431830 24904331 ~ 24905581 (+)
G587660 NA other upstream 1529411 23807722 ~ 23808000 (+)
LOC110527540 LOC106533352 other upstream 1716042 23609520 ~ 23621369 (+)
G586685 NA other upstream 2322291 23010061 ~ 23015120 (+)
LOC110527523 stat1-2 other upstream 2633590 22684527 ~ 22722539 (+)
G589734 NA other downstream 262295 25587088 ~ 25608606 (+)
G589933 NA other downstream 662620 26003930 ~ 26025309 (+)
G590936 gart other downstream 1211244 26552554 ~ 26553542 (+)
G590949 LOC106575121 other downstream 1236097 26577407 ~ 26577933 (+)
G592134 NA other downstream 2141740 27483050 ~ 27483796 (+)

Expression


Co-expression Network