retreg2 (LOC100380703)


Basic Information

Item Value
gene id retreg2
gene name LOC100380703
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 25346396 ~ 25358486 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608936.2
agtgacgagcAGTAACATCGGGGTCCTACTTTTTTTGGGGGTTAACAGTGACGGACCTGCGTGGATCTATCCGCCTATCCATACCCCGTGATCACCAAAACAACATAACAAAGTGGGGGGGAAAAAATGGCGAGCGGAGAGGAGGCTAGACGCCCCTCGGTTTCTTCCTCTGCCGTCCTCGAGGACCTGTTCCCTGCCGGAGGATCAGAGCCAGTATGTGGGGACGAGAACCCTGAGCTTGTGCAACTGCGAGAGCGTCTCCAAGGCTGGCTATCGCAATATGAGCCGTTGCTGTTATGGGTGCAGAGGCTGCTTGTTTGGGAAAGGCCGCTCTACAGCATCTTTGTTGCGCTCACGCTGAACACCTTGTTCTGGCTTCTGTCTTCGACGTCCCTgcgtcctctcttcctcctgagTCTTTCCATTCTAGGGCTCATGCAGCTGGAGAGATGGAAGCATAAATTACCTCTTACAACCGTTCAGTATCCTGAGGCCAACCCACTGGAAAGAGAGGCCATGAGTGTGCAACCCCGGCTCCTCAGCATTCCAGAGCTCAGCCACCACCTGGTGGAGAGCTACCTCTACTGCTGCCTCTACGTCCAGGAGATGCTGCAGTACAAAAGGCAGAACCACGGAAAGTTCTGTGCTATGATGTGCTCTGGTTGTTCTGTGCTCGCTGTGGTGGGACACTACGTACCCGGAATCATGATATCCTATATCATCGCGCTGAGTGTGTTGGTGTGGCCTCTGGTGGTGTACCACGAGCTGATCCAGCGGATGTACACGGGCCTGGAGCCCATCCTGATGAAACTGGACTACAGTATGAAGGGAGACACGCAGCACCACAAGCACGATAAGAGGAaggtgaagaaggaggtggaggaaggggaTGAGCCCAGggctgagacagagagcgagagcgaggagGAGCTATCCTGCTTTGCCCCACTGGTGGATGCAAAGACCACCGCCCTGGCAATGGCCATCACTGACTCGGAGCTGTCTGACGAGGAAGCATCCATTTTGGAGAGTGGGGGGTTTTCCGTATCCAGAGCTACCACCCCACAGCTCACAGACGTCTGTGAAGACCTGGACCAGCAGAGTGTGCACAGTGACCCAGAGGAGGCCTTCCtaagggacctacctgaattccCCTCGATTGACGAGTTCCCCATCGAGCACAGCCTCCTCCACTTCCCATTGCGTGGTCAGGGCCAAGGGGACGGGGCCGCGGCTGGGGGAAGAGAGCCCTCGGAGGGGGAGCCCATGAGCCCCGCCAGCCTCCTCATCCAGCACCTGGCCTCCCCGCTCCACTTTGTCAACACACACTTCAACGGACATGGACGGCCGCCAGGTGGGGACCAGGGACCACTGCTGGGTGCTGGGAGAGCGGAGGTGGTGGTGCATGGGGGGGAAGGGGAATCCCAGGCCCCAAGGCCGTCACTGGAAGCCCTGAGTGAGGAGATCGTGAACACGGCAATCTCCACCGTGGTACAGAACACACTGTCGGCCCTGCTACACTCCACCGAGGCAAGTAAGGGCCCATCCATCGCAGATTTCCTGCCCACCGACATGCCCCCCAGCGCCCTGGAAAGCCCCACCGCCCCTGTCGCCGAGACAGAGGAGGCAGAAAAGGACCAGGATGTGGTCGCTGCAGAGTCTGAGAGGAGTGCCGAGGAGATGCCGGACGACATGTTTGTACCGACCGAGGACGAGGACTTTGAGCTTCTGGACCAAAGTGAACTGGAGCAGATGGACGAGGGTCTGCTGGGTCTTCTCAGTCCTGATGGACATAGGGTAGTGGGAGTGGCCTCTCCCGCAGACACACACCCATCTCCGACGCACCAACCGGAATCCTTCTAGCGTCCTCATCACCGCTCATACCCTACTGTTTTTGTTTTACGTAGATATACATTATACAGATATATATGTACACTTATCAAAGTGTCTGTGGTTAGTGGCAGTTGGTTAGTGATTGAGATCACTGTGGTTAATTCTGCCTCCACACGATCACTGTGGTTGAGTCCAAATGGCActttattccctttatagtgccctactttttaccagggcccatagggctctggtcaaaagttgtgcactatagctggaatagggtaccatttgggattaAACTTGTTTCTTGAGGCTTGGGCTTGATGGTGCCTGTGTTTGACAGGCTTTTATTGCTTTTAACCAAGGGAACAAGCCATCTGAGATTTGGGAGCTACTAGTAATATGTTTGGGTGGCAGGAGAAGGGTTTGGTGGAACCTCGTCCCAGATTTGTTTCTGCTGTATCTTGTAATGCCAAATGGAGTTGGGTACATTACAGCACAATCTGCAATGGGTCCAGATCCACAGCCACCCTTCTTGAAGGAAATTATTAACAGATTATATGTAGATGGATTCTTTGAGAGAAAGAAAAGGTTTTTGTTTTGATTATATTAATATATATgataaattatttttatttaatggtCAGTTTAATGGAAATCTATTGTCGTCATATGGGAATTTGAAAGTAATAAAGATTCTCTATGGCCAGTAACCCAAGTTGATTCTACAATCAGTATTGGATTTAGATCATTAGCGAAACACACGTTCTCATGTAGGCACAAATACGTACGTTTGGGAGTTTCATTGAAGGTAGTTTATTAACCAGCAACCCCTGAAGTAAGTTCAGCACTCAATTGTGAAATCTCCCAAACAAAACTTAGTCTGTAGTTATTAGCCATACACAAAGGagttatgccatctattttaacTGTCTATTAAAATGACATTTCGGGTGTATTGGACATTGTAGGCACAAATACGTATGTTTGGGAGTTTTATTGAAGGCAATTTAATGACCAGCAAGCCCCTCAAGTAAGTTCCACACTCAGAGAAATTGTGAAATCTCAAACAATAATTTACAATAGATCTTTGAATTTTagtgtgtattttttttaaatccccaaACCAggtgatggtaaaaaaaaaatctttacccATACAAAACATACTTACTGTGATATGCTGACAACCTTTTCAATTGCTCATTGTCAACATCTCAAAGGTCTATATTTTGTTAGTTGTATTCTGTAATGGTTGTAAACGAATGCAAGTGCTATTTCACCACCACCAATTGCTTAATATGTGTACAACTTGCAAATGTTCTGGGTACTTAATACTCTTGGAAATACCAGACCTAGGGCAAAACATTTGTAACACTGTGGGAGGCAACCAGTCTGTCTTGAGACTAGGTACCTAACATCTGAAGAAGGTTCATAATGCAGGTTTTGTCATGGCAATCCCACATACAACTGCCATTCGCTATGACAAATGATTGAAAGTAATAGGAATACATGCATTGCATTATCTGTCAAAAAGGTATGTTACCTAGGTCCTATGTAACAATGATGGGAATTCTTAATTTCATAAATTGGTTACTAGTGGGAATTCAGCTCAACCAACTTAACTAGGACAGCTTTATTGCGAGTGTGCCTATCTGATCTGAATCTCAGGAGTGGGATGTACTTTAGTTTGCGCAATGGAAGATACCGTTGCACGTAGAAACTAATATGTAGATGCAAATTAATGTGAGGTAGAAAATGGCGTCCACCAATGTCTAGCCTAAAGTTCCCCAACCCAAGTTGTCCCTGTGCACTGTATTGTAATTTTGACCAACCTTTTTCCTGGCCAATGCCTTCCAAGCACTTCTGTAAAAGGTTTCCCTCAAAATGAGAGCAATTTAACATTGCATGTGAAAACCAAGCATTAAAAATGCAACTTGGAGGGAGCAAGATCTTGGACTTGTAGCAAGCATGCAATTTGTATGTTGCAGCTTAAATAGAATTTCTAGAACACTAAATTGCCCAATGAGGCAATTTAGTGTGATTTCATTTAAAAGGTCATTTGTTTTACTATAATCCCACTGTAACCAACTATAAAAAGACATTAACAAATGTGTTATAGAAATGTTTGCTTATGCTTTTACCGCTTCTTGATCTATAAAGGCACTTAACAAGAAATGTA
>XR_002474141.2
agtgacgagcAGTAACATCGGGGTCCTACTTTTTTTGGGGGTTAACAGTGACGGACCTGCGTGGATCTATCCGCCTATCCATACCCCGTGATCACCAAAACAACATAACAAAGTGGGGGGGAAAAAATGGCGAGCGGAGAGGAGGCTAGACGCCCCTCGGTTTCTTCCTCTGCCGTCCTCGAGGACCTGTTCCCTGCCGGAGGATCAGAGCCAGTATGTGGGGACGAGAACCCTGAGCTTGTGCAACTGCGAGAGCGTCTCCAAGGCTGGCTATCGCAATATGAGCCGTTGCTGTTATGGGTGCAGAGGCTGCTTGTTTGGGAAAGGCCGCTCTACAGCATCTTTGTTGCGCTCACGCTGAACACCTTGTTCTGGCTTCTGTCTTCGACGTCCCTgcgtcctctcttcctcctgagTCTTTCCATTCTAGGGCTCATGCAGCTGGAGAGATGGAAGCATAAATTACCTCTTACAACCGTTCAGTATCCTGAGGCCAACCCACTGGAAAGAGAGGCCATGAGTGTGCAACCCCGGCTCCTCAGCATTCCAGAGCTCAGCCACCACCTGGTGGAGAGCTACCTCTACTGCTGCCTCTACGTCCAGGAGATGCTGCAGTACAAAAGGCAGAACCACGGAAAGTTCTGTGCTATGATGTGCTCTGGTTGTTCTGTGCTCGCTGTGGTGGGACACTACGTACCCGGAATCATGATATCCTATATCATCGCGCTGAGTGTGTTGGTGTGGCCTCTGGTGGTGTACCACGAGCTGATCCAGCGGATGTACACGGGCCTGGAGCCCATCCTGATGAAACTGGACTACAGTATGAAGGGAGACACGCAGCACCACAAGCACGATAAGAGGAaggtgaagaaggaggtggaggaaggggaTGAGCCCAGggctgagacagagagcgagagcgaggagGAGCTATCCTGCTTTGCCCCACTGGTGGATGCAAAGACCACCGCCCTGGCAATGGCCATCACTGACTCGGAGCTGTCTGACGAGGAAGCATCCATTTTGGAGAGTGGGGGGTTTTCCGTATCCAGAGCTACCACCCCACAGCTCACAGACGTCTGTGAAGACCTGGACCAGCAGAGTGTGCACAGTGACCCAGAGGAGGCCTTCCtaagggacctacctgaattccCCTCGATTGACGAGTTCCCCATCGAGCACAGCCTCCTCCACTTCCCATTGCGTGGTCAGGGCCAAGGGGACGGGGCCGCGGCTGGGGGAAGAGAGCCCTCGGAGGGGGAGCCCATGAGCCCCGCCAGCCTCCTCATCCAGCACCTGGCCTCCCCGCTCCACTTTGTCAACACACACTTCAACGGACATGGACGGCCGCCAGGTGGGGACCAGGGACCACTGCTGGGTGCTGGGAGAGCGGAGGTGGTGGTGCATGGGGGGGAAGGGGAATCCCAGGCCCCAAGGCCGTCACTGGAAGCCCTGAGTGAGGAGATCGTGAACACGGCAATCTCCACCGTGGTACAGAACACACTGTCGGCCCTGCTACACTCCACCGAGGCAAGTAAGGGCCCATCCATCGCAGATTTCCTGCCCACCGACATGCCCCCCAGCGCCCTGGAAAGCCCCACCGCCCCTGTCGCCGAGACAGAGGAGGCAGAAAAGGACCAGGATGTGGTCGCTGCAGAGTCTGAGAGGAGTGCCGAGGAGATGCCGGACGACATGTTTGTACCGACCGAGGACGAGGACTTTGAGCTTCTGGACCAAAGTGAACTGGAGCAGATGGACGAGGGTCTGCTGGGTCTTCTCAGTCCTGATGGACATAGGGTAGTGGGAGTGGCCTCTCCCGCAGACACACACCCATCTCCGACGCACCAACCGGAATCCTTCTAGCGTCCTCATCACCGCTCATACCCTACTGTTTTTGTTTTACGTAGATATACATTATACAGATATATATGTACACTTATCAAAGTGTCTGTGGTTAGTGGCAGTTGGTTAGTGATTGAGATCACTGTGGTTAATTCTGCCTCCACACGATCACTGTGGTTGAGTCCAAATGGCActttattccctttatagtgccctactttttaccagggcccatagggctctggtcaaaagttgtgcactatagctggaatagggtaccatttgggattaAACTTGTTTCTTGAGGCTTGGGCTTGATGGTGCCTGTGTTTGACAGGCTTTTATTGCTTTTAACCAAGGGAACAAGCCATCTGAGATTTGGGAGCTACTAGTAATATGTTTGGGTGGCAGGAGAAGGGTTTGGTGGAACCTCGTCCCAGATTTGTTTCTGCTGTATCTTGTAATGCCAAATGGAGTTGGGTACATTACAGCACAATCTGCAATGGGTCCAGATCCACAGCCACCCTTCTTGAAGGAAATTATTAACAGATTATATGTAGATGGATTCTTTGAGAGAAAGAAAAGGTTTTTGTTTTGATTATATTAATATATATgataaattatttttatttaatggtCAGTTTAATGGAAATCTATTGTCGTCATATGGGAATTTGAAAGTAATAAAGATTCTCTATGGCCAGTAACCCAAGTTGATTCTACAATCAGTATTGGATTTAGATCATTAGCGAAACACACGTTCTCATGTAGGCACAAATACGTACGTTTGGGAGTTTCATTGAAGGTAGTTTATTAACCAGCAACCCCTGAAGTAAGTTCAGCACTCAATTGTGAAATCTCCCAAACAAAACTTAGTCTGTAGTTATTAGCCATACACAAAGGagttatgccatctattttaacTGTCTATTAAAATGACATTTCGGGTGTATTGGACATTGTAGGCACAAATACGTATGTTTGGGAGTTTTATTGAAGGCAATTTAATGACCAGCAAGCCCCTCAAGTAAGTTCCACACTCAGAGAAATTGTGAAATCTCAAACAATAATTTACAATAGATCTTTGAATTTTagtgtgtattttttttaaatccccaaACCAggtgatggtaaaaaaaaaatctttacccATACAAAACATACTTACTGTGATATGCTGACAACCTTTTCAATTGCTCATTGTCAACATCTCAAAGGTCTATATTTTGTTAGTTGTATTCTGTAATGGTTGTAAACGAATGCAAGTGCTATTTCACCACCACCAATTGCTTAATATGTGTACAACTTGCAAATGGCAAAACATTTGTAACACTGTGGGAGGCAACCAGTCTGTCTTGAGACTAGGTACCTAACATCTGAAGAAGGTTCATAATGCAGGTTTTGTCATGGCAATCCCACATACAACTGCCATTCGCTATGACAAATGATTGAAAGTAATAGGAATACATGCATTGCATTATCTGTCAAAAAGGTATGTTACCTAGGTCCTATGTAACAATGATGGGAATTCTTAATTTCATAAATTGGTTACTAGTGGGAATTCAGCTCAACCAACTTAACTAGGACAGCTTTATTGCGAGTGTGCCTATCTGATCTGAATCTCAGGAGTGGGATGTACTTTAGTTTGCGCAATGGAAGATACCGTTGCACGTAGAAACTAATATGTAGATGCAAATTAATGTGAGGTAGAAAATGGCGTCCACCAATGTCTAGCCTAAAGTTCCCCAACCCAAGTTGTCCCTGTGCACTGTATTGTAATTTTGACCAACCTTTTTCCTGGCCAATGCCTTCCAAGCACTTCTGTAAAAGGTTTCCCTCAAAATGAGAGCAATTTAACATTGCATGTGAAAACCAAGCATTAAAAATGCAACTTGGAGGGAGCAAGATCTTGGACTTGTAGCAAGCATGCAATTTGTATGTTGCAGCTTAAATAGAATTTCTAGAACACTAAATTGCCCAATGAGGCAATTTAGTGTGATTTCATTTAAAAGGTCATTTGTTTTACTATAATCCCACTGTAACCAACTATAAAAAGACATTAACAAATGTGTTATAGAAATGTTTGCTTATGCTTTTACCGCTTCTTGATCTATAAAGGCACTTAACAAGAAATGTA

Function

NR:

description
protein FAM134A-like

GO: NA

KEGG:

id description
K23880 RETREG; reticulophagy regulator

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608936.2 False 4018 mRNA 0.47 9 25346396 25358486
XR_002474141.2 True 3979 mRNA 0.47 10 25346396 25358486

Neighbor

gene id symbol gene type direction distance location
fastkd2 fastkd2 coding downstream 9036 25327135 ~ 25337360 (-)
LOC110527565 LOC106575142 coding downstream 55552 25215219 ~ 25290844 (-)
LOC110527562 tm163 coding downstream 182039 25121268 ~ 25164357 (-)
LOC110527560 LOC106575088 coding downstream 381065 24915977 ~ 24965331 (-)
LOC110528817 LOC106575139 coding downstream 522909 24821195 ~ 24823487 (-)
LOC110528818 NA coding upstream 421 25358907 ~ 25361270 (-)
cnppd1 LOC106575101 coding upstream 4955 25363441 ~ 25371970 (-)
abcb6a LOC106574324 coding upstream 13624 25372110 ~ 25414754 (-)
nrp2a nrp2 coding upstream 73885 25432371 ~ 25500367 (-)
pard3ba pard3b coding upstream 192135 25550621 ~ 25725570 (-)
G589575 NA non-coding downstream 20116 25325285 ~ 25326280 (-)
G589590 NA non-coding downstream 31096 25301454 ~ 25315300 (-)
G589525 NA non-coding downstream 131872 25203119 ~ 25214524 (-)
G589558 NA non-coding downstream 145507 25199142 ~ 25200889 (-)
G589556 NA non-coding downstream 148147 25197927 ~ 25198249 (-)
G589631 NA non-coding upstream 48225 25406711 ~ 25407033 (-)
G589639 NA non-coding upstream 55520 25414006 ~ 25414225 (-)
G589648 NA non-coding upstream 66376 25424862 ~ 25425294 (-)
G589652 NA non-coding upstream 70260 25428746 ~ 25428977 (-)
G589529 NA other downstream 67522 25201406 ~ 25278874 (-)
G589093 NA other downstream 367289 24971613 ~ 24979107 (-)
G588987 NA other downstream 517696 24828488 ~ 24828700 (-)
G587242 NA other downstream 1968695 23375012 ~ 23377701 (-)
G589705 NA other upstream 186249 25544735 ~ 25545418 (-)
G590443 NA other upstream 799507 26157993 ~ 26158305 (-)
LOC110527590 LOC106575121 other upstream 1219683 26575613 ~ 26585525 (-)
G591808 NA other upstream 1807689 27166175 ~ 27166468 (-)
G592298 NA other upstream 2124471 27482957 ~ 27483780 (-)

Expression


Co-expression Network