cnppd1 (LOC106575101)


Basic Information

Item Value
gene id cnppd1
gene name LOC106575101
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 25363441 ~ 25371970 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608940.2
GCGGGCTTGTCAGACGTCACAACGGGGGTTACTGTTGTGCTAGGTAGCTAGCCTGAGTAATACCAGGCgccgttttatatatatatatattttttttttctcccccagcTCGAGTTTTCTATTTCTACTATTTGGCTAATGTTGGATAGACCAGCATGGATTTCGACGAATTGTTTAGTGAACGAACATTTCAGTTTTCTGACTTTCAGGAGTTTACGTTTCTTCCTGGACATCAGAAACTGTCAGAGAGAGTGCGGAAGCGATTGTACTATAGCCTGGAGCAAGACGGCTCTCCAGATTCCCTTTCCTGTCCTGTTACAGATATTGCTGTGGAACTCCTTCAGAAATCTGCCCCGAGCCCAATTCGAAAACTACACAAGAAATATGCTGCTCATGTCGCGAGGGAGGCGTGCATCTCTCCATGTGCCATGATGTTGGCCCTGGTCTACATCGAAAGGCTACGACACAGGAACCCCGAATACCTGCAAAAGATCTCCTCCTCGGACCTCTTCCTTATCTCCATGATGGTTGCCAGCAAGTATTTGTACGACGAAGGGGAGGACGAGGAGGTGTTCAACGACGAGTGGGGGGCTGCTGGGAAACTGGACGTCCAGACTGTCAACACTCTGGAGATGAATTTCCTCGACGCCATTGAGTGGAGCCTCTTCACTGAGCCCGGGGACTACTTTGGCATACTGAATCAACTCGAAACCAGTATtgcagagaagcaggggatgaAGCGAGGCTGGTTCACCTACACCGACCTCTGTGTGCTGCTGGAGCAGGCGGCGTGGCGACAGGCACTGACGGCCATCTACCTGCACTTTGCCAAGGTGACCTGCATGCTGGGGCTGGTGTATCTGACCAGTGTTGCGGGCCTTATCGCCACCAGCCTCCCCAGGAGCAGCCAGCCCCTGGCCCCAGTCCGCCAAGTCCCCCTGCTGAGCTCCAGCCTCTCTCCACCACCACTAGGCCTGCTCCCAGTCCCGGAGACCACCAGTCCAGCATCCGACCTCCCTCGCTGCTGCGTCTTGGGCAACGACAGTCACAACCGCCGGCCTGGCACTCTGCACACCCACGACGACCACAACCACGGCTCGCCAACCTCCTCCCAGACCTCTATACTGTGtctatggggctctatcctcactTCGCTAAGCCACACTGACCCACACCCCCAGCCCGACACTGAACCAGCCTTGTCCGCCTCCTCTCTGCACTGCCCCGGCTGCCAGGTTACAGTGGGGAGCCTCCCTCCTGGCTCCATCCAGTGCGGCCCACAGAACACCTCTGCTCCGCTACTAGAGCCTGGACACCCTGGTCACCCGGCAGCACCGTGGCTGGCCCCTGCCCCCCTCCTCTACGGAGCCGCCCCGATGCTCCTGGACTCCCGTCTGACTGGCATGGCGCCGCTCCGTGTCGGACCCTGCTGCCCACAGTTCATGCTGCCCATCGAGAAAGCCCCATCTCTCCTCATGCCCAGCTAGACGCAGACGGACAAAACAAGCCACTATCGTTACCCTTCAATGACGATGACGCCGGACTCCAAATGAAACCAGCTGGTTTTTCAGAATGCATCCGTTGCAGTGAAAGGAAAGTGAATTTTTGTTTTGTATGTGCTTTTTTTTTGCATATACTGTCTAAATTTGAGATAAGGGGCCCCTAAAGGTGAGTAGCACATTTTGTACAGTGGTTTGCCAGCTGAATTGGTGTAAATAAGTAAGATGAACTCATAACAGCGTGAGATTTGAGTTCTGTGCTCAGGCACTTATCTTTTCCAATGTATATTTTTCAAAGGTTGGATCACGCAGCTTTTCAATAGGTGTTTCTAGAAGGTGTGTACATGGCAAACTAATATTTCATGTTTGGTTTAAAAATACACAAATATGTCTAAGCATGGCTACCATACTCGCACAGTGTTTGTTACTACCTAAtctttagcctgggtaccagaTTTGTTTGTGGAATGATGgaacaaacagactggtacccaggctacctACACTTTACCTATGTTTGAAAATGGGGGGATTGTGGGGGTTGGGCTAAGTCATGTTGTTAGATGGAAGAGTTCAGTTTTGATGTGACATCATAGCCATTTGAGAATGTTGAGAAAGTAAGTTGTCTCCACAAAAGCAAGGCTGCCTTCTAAGTCAGTACTGTAGTGCTTTAAGAAGGGAGTCAATTTAGCCTGGTGCCAGATCtttttgtgctcttgccaactcttGCTCTCCTTGTCAAGCCAAACATTGCATGACAAGGAGTTGGattgatggcacaaacagacttgCACTCAAGCTAGAGACAACTAGCTTGCCTACATTTCATTTGCCATGGAGTCTTTGGGTCATTATTTTTCTCAGTTACTGcagttatttttaaaatgttaacATATTTAtgctttttggggggtttgttaATAATAACTAGACCAGCAAAGCCACAGATGGATACTGGTCCCTGCACTGAACAACAGTAGagattcatttatttttattattattattattaaaaaaacattaaattCATATCTCAGTATGGCTGCCCCTCAAGtcttgttcattagggcacatcgTAGCGAAATGCTTTAGACCGCTTTGCAACAGTAAACAAACATTTGTTTCTGAACATGACCCTGAACTCTGATAGCACTGGGTGAGATGCAACTCTGAGAGTGTAGCCTTTTTAGTAGTTTTTTTTTCAAGTAACTATTTATTTTACCATGACAGAATGCAGTGGCTCTCTCTGATGTCATGTTTTTCCAACAGAATGCAGTGGCTCTCTCTGATGTCATGTTTTTCCAACAGAATGCCACGCAACTGAAATAGGTCATAACCAGTTTACTGTTTgccattgtttattttttttaaataagcgtTTTGAATACGACGGCGCCTGACATCAAACATGATTGTTTTGGAAATGTATCTAATGATTGCAATTTTCATCCAATAACCTTTTCATGGAAACCTAACATCCTCATATGGGTGAGTTGTATTGTGCAAAACACAACTTTTCattaaaacattattattatttttttaagatCTGTTTTTCAATTTTTGCAATTAATTAGTATCCCTCTTTAACATACCCATTTTTTGGTCGGGGAGACCTGACCAACAAAGTCACTCATACACCATTTTGTCTTCTCTTCCTGCTCAAAAATGGAGAATGTCTTCTTtctgcatagaaatagaattcctCGAATGGGGATATCCATTCTTGAATGGGGATGTAAATTCTAAGTCATACTGCTTCTATGTATCTCATCCTGGAAAAACAGTTAGCACTTCTCATATTTTTCTACTCAAGATAGTTTCTTGCTAGGGAATTTATGATTATTTGAACATTTGACTTGGTTTTACATTGACACGTTTCTAAATAAAACCTTTTTCAAATCGGACTGAGATTTTGAAGCATGAAATCCTTGAATTTTGTAAACCATGTACAAAACATTCAATGTGTAGAAATCTGTAATAAAATGTTTGACCCTTT

Function

NR:

description
protein CNPPD1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608940.2 True 3498 mRNA 0.45 8 25363441 25371970

Neighbor

gene id symbol gene type direction distance location
LOC110528818 NA coding downstream 2171 25358907 ~ 25361270 (-)
retreg2 LOC100380703 coding downstream 4955 25346396 ~ 25358486 (-)
fastkd2 fastkd2 coding downstream 26081 25327135 ~ 25337360 (-)
LOC110527565 LOC106575142 coding downstream 72597 25215219 ~ 25290844 (-)
LOC110527562 tm163 coding downstream 199084 25121268 ~ 25164357 (-)
abcb6a LOC106574324 coding upstream 140 25372110 ~ 25414754 (-)
nrp2a nrp2 coding upstream 60401 25432371 ~ 25500367 (-)
pard3ba pard3b coding upstream 178651 25550621 ~ 25725570 (-)
atp5pf LOC106575112 coding upstream 601428 25973398 ~ 25977207 (-)
appa app coding upstream 611699 25983669 ~ 26025316 (-)
G589575 NA non-coding downstream 37161 25325285 ~ 25326280 (-)
G589590 NA non-coding downstream 48141 25301454 ~ 25315300 (-)
G589525 NA non-coding downstream 148917 25203119 ~ 25214524 (-)
G589558 NA non-coding downstream 162552 25199142 ~ 25200889 (-)
G589556 NA non-coding downstream 165192 25197927 ~ 25198249 (-)
G589631 NA non-coding upstream 34741 25406711 ~ 25407033 (-)
G589639 NA non-coding upstream 42036 25414006 ~ 25414225 (-)
G589648 NA non-coding upstream 52892 25424862 ~ 25425294 (-)
G589652 NA non-coding upstream 56776 25428746 ~ 25428977 (-)
G589529 NA other downstream 84567 25201406 ~ 25278874 (-)
G589093 NA other downstream 384334 24971613 ~ 24979107 (-)
G588987 NA other downstream 534741 24828488 ~ 24828700 (-)
G587242 NA other downstream 1985740 23375012 ~ 23377701 (-)
G589705 NA other upstream 172765 25544735 ~ 25545418 (-)
G590443 NA other upstream 786023 26157993 ~ 26158305 (-)
LOC110527590 LOC106575121 other upstream 1206199 26575613 ~ 26585525 (-)
G591808 NA other upstream 1794205 27166175 ~ 27166468 (-)
G592298 NA other upstream 2110987 27482957 ~ 27483780 (-)

Expression


Co-expression Network