LOC110527579 (LOC106575110)


Basic Information

Item Value
gene id LOC110527579
gene name LOC106575110
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 25921719 ~ 25934364 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608959.2
AGTGGAACATAACAAATGAAGAGCTCCATTCGTCTGTCAGCCTACTCTTTCCATAAGAGAGAGTAGACATATTATATTGTTTCATGTATTCTCGTCATTGAGATGGGAGACATATTGCATATAGGCCTACGGAAGCCGAGGAGAGACGAAATATTTTGTCTCCACCCGCGGGAATGGCGACTGAAGAATGTCAGACAGGCGTGAGTGGTGGACATAGAGTGATAGAAAGTCGGAATGTCCTACATATTCCAATGTAACTTTTTCTGCAAGGTATTTCAAAACTAAGTATTTCCTTTGCGTAAATCATCCTGGAGTCTCCAAAGGATTCCTGAAGAAGGCACGCAGAACAGAGGCAAGTTTTTAAACCATGGCCTGAAAAGATGAGCAAATCAGCCTATACAGTCGAACTCACATGCATTACGTTAAGTTTTTTCCAACAAAACgatacgttttttttttcttagaTTATTTAATGTGGTATTTTCTGTAATTAAGTTATTAGTTATTATAATGTCCCATCAACTGCCGTAGGCTATTTTGTGTTACGAAATGGACATTCTATAAAATGTTATTGCTTTAGTTTAGCCTATTTAATTGCTTTGGTATCGGCTGGAGGCAGTGGCATTTTGACAAATTATTCTAATCGTCATCATCAGTGGGGCAATGCGTGAGTATAAAGTCGTGGTCCTCGGCAGCGGAGGTGTCGGCAAGTCTGCTCTCACCGTGCAATTTGTGACCGGGACCTTCATAGAGAAGTATGACCCGACAATTGAAGATTTTTATCGAAAGGAGATCGAGGTGGATTCCTCCCCGTCGGTGCTGGAGATTCTGGACACTGCTGGGACAGAGCAGTTTGCTTCTATGAGAGACCTTTACATCAAGAATGGCCAGGGCTTCATACTAGTCTACAGTCTGGTCAACCAACAGAGTTTCCAAGACATCAAGCCAATGAGAGATCAGATCATCAGAGTTAAAAGGTATGAGAGTGTGCCTGTGATCCTTGTGGGGAATAAGGTGgaccaggagggagagagggaggtgtctTGTGGAGAGGGCCAGGCTTTGGCCGAGGACTGGGGCTGTCCCTTCCTAGAGACCTCGGCGAAGAGCAAGACCATGGTGGACGAGCTTTTCACTGAAATCGTCCGACTGATGGACTCCTCCTCGCTGCCCAACAGAGCGGAACCCTGCTGCGGCTTAGCCTGCAGTATACAGTAGCTCGCGGGGAGGCGGGTCTGTGAGAGGGTGGCGGACAGGGGGCTGAACAAATAGGCGCACAGCTGCTCGGTTTGCAGTATTTACCAACTTCAGGGGGGAGTTGGACAATTCCGCCCTCAATGAATAAAACATGTTTGTGATGGTGAGCTATagaagtcttcaggtctcaggcaaggttactctTCATGCGACAGTGGTACACCGAATTCCCTCCGTTACACATTCGCCAGAGAAGCATTTGGAAACAGGGGTGAAAGAAAACAGATTAACATTGTAAGCCTACATCGTGTGTTGACTCAAAAGGATGGGGCATAGTATGGGACACTATTGAGTACGTAGAATCAAACTCACCAAGACCGAAGGACGGACAGAagcacggacagacagacagtctaagGGTTCTATTAAATCTGTATCGCAAAAGTTTAGCCTTACAGCGGGATAGAAATTTAAAGTCAATTTTCCGGtgttagcggagactgcatttaCGGtaaacactatatactgtatgtcgGACTCAATTGGAATTTACATTTCTATTGTGCAATCTGTAATGCTTCACATAGTTTAGCTTGGCGTTGTCTGTGCATCTTGGTTGCCATACACAACAAATTGTTTGCCTTGTTACCTGAGGTTCGTGGTTGACTACACATGTTTTTAATGTGTACAGTTACATTTAATCTCCCACTTCGGTTTTATTTTGCACCtcaatatatacattttcaacaaatgtggaaaaagagtcAAATGTATTTAATGACATTTGTACAATTATTAATAGGCTATAATACAAATATCAGtatcatacagatgtaggatcttcatttgaatGTTCCTGCACAGTCGGAAATGCAAACATGTAGTGtataaggtttaaaaaggcttccgAGTTTTTACATTTCCACTTcaaaatttcagacttgatttgccctattgtaaaatgtatcaacccctacaaaaaaatgtaattcattattatccacataataattcacatttcctgttgctgctgtagcaaactggctcaaatgaaaaTCCTACATGTGTAAACGATATAAATTATATACGTGTGTTAGTTATTAGATCATCAGGTTTTTATGAAACTCTAGACTTTGAACATGACTTCCCACACCACATTATACagcatcttcaatgctcttactgagggaaggaggttgttggccaagatctcgcgatacatggccccatccatcctcccctcaatacggtgcagtcgtcctgtcccc

Function

NR:

description
ras-related protein Rap-2a-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608959.2 True 2465 mRNA 0.43 2 25921719 25934364

Neighbor

gene id symbol gene type direction distance location
LOC110527578 LOC106575107 coding upstream 18222 25894729 ~ 25903497 (+)
LOC110527576 LOC106575106 coding upstream 47211 25803550 ~ 25874508 (+)
LOC110528820 LOC106575143 coding upstream 152618 25767227 ~ 25769101 (+)
LOC110527571 LOC106575097 coding upstream 575412 25342711 ~ 25346307 (+)
mdh1b mdh1b coding upstream 580409 25337411 ~ 25341310 (+)
mrpl39 LOC106575108 coding downstream 5183 25939547 ~ 25949320 (+)
jam2a LOC106575111 coding downstream 22058 25956422 ~ 25972398 (+)
n6amt1 n6amt1 coding downstream 601419 26535783 ~ 26543684 (+)
LOC118965273 NA coding downstream 651155 26585519 ~ 26595151 (+)
LOC110527592 LOC106575150 coding downstream 1524330 27458694 ~ 27482580 (+)
G589909 NA non-coding upstream 27755 25888950 ~ 25893964 (+)
G589734 NA non-coding upstream 317904 25587088 ~ 25608606 (+)
G589404 NA non-coding upstream 387533 25500850 ~ 25534186 (+)
G589358 NA non-coding upstream 490136 25431350 ~ 25431583 (+)
G589936 NA non-coding downstream 38066 25972430 ~ 26018945 (+)
G589930 NA non-coding downstream 49305 25983669 ~ 25988528 (+)
G589995 NA non-coding downstream 99096 26033460 ~ 26033669 (+)
G590025 NA non-coding downstream 160578 26094942 ~ 26095408 (+)
G590024 NA non-coding downstream 161148 26095512 ~ 26096989 (+)
G588755 NA other upstream 1016138 24904331 ~ 24905581 (+)
G587660 NA other upstream 2113719 23807722 ~ 23808000 (+)
LOC110527540 LOC106533352 other upstream 2300350 23609520 ~ 23621369 (+)
G586685 NA other upstream 2906599 23010061 ~ 23015120 (+)
G589933 NA other downstream 69566 26003930 ~ 26025309 (+)
G590936 gart other downstream 618190 26552554 ~ 26553542 (+)
G590949 LOC106575121 other downstream 643043 26577407 ~ 26577933 (+)
G592134 NA other downstream 1548686 27483050 ~ 27483796 (+)
G592445 lig4 other downstream 1769219 27703583 ~ 27707294 (+)

Expression


Co-expression Network