LOC110527586 (LOC106574337)


Basic Information

Item Value
gene id LOC110527586
gene name LOC106574337
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 26060369 ~ 26085630 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983087.1
gacagactgcCACGCTCTTTCTGTCCCAACTAGTGGGAATACTGAAGATATGGGTGACTATTGAAAAATGCATTGTTCTAGTTCTCCTTTACTCTCCTGTTTGCGTCTCGGCGCCGGGGACAGGACCAAAAAGGGGAGTTGGGTGGGGCGGCAGACTCGGAAGCCTCCAGCACTTGACTTTGCTTTGATTTCGGCAGACACGAgaacacagcagggagagagacgagggggGTGGAGTGGCGAGTGAGTGCAAAGGGGCAggactttttctctctcctctattaaGAGGAAACTTTTGTGTTTTGTTCTCCAAGTTCAGCTCGGTCCTCAAGCCGTGTTCTCCGCTGCGCTTTTCTCCAATCTTCGCTCTTTTCTTCCATTCCCTCCGATGCCTTCATTTTTCTGCGTTTTTTTTCACTTTTCATTGCAATTCTGGATATCGAGATCATGCGCATTCAAACGGGACCTGTTCTGAAAATTGTTTGTTCTTCGTTTCCATTACTGTTTTAGTTGGAATATAAATGTTTCGCCGTGCACTGCTTGTTTTGGGGTAAAGATGACCCGTGTCTTTTGCGCTTTTGCTGGAGTCATGATGGTGTTTCGCATTATTTTGCTGTGCATCATGGAGTTGCATACTGGCTGCGATGCGGTGCTCGCCGCCGGTCTCACCACTTTCAGGGCTTTCGCTCCACCTGCACAAGAGGGTGTTGTGCGGACCGTCGATCGGATTTACCATGGTGGTGGGAAGGTTGGTTACCTACTCTACATGGATGGGAGAAAGTTTCAGTTAGATATGGAGAGGGATGAGTCAATTTTGTCACATCACTTCAGTCCGAAATATGTGATGGCCCTGATGGGGGCGGGAGAAGACGCCGCGCCTCTGCACCGGGAGTGTGTTTACCGGGGAACCGTGGACTCCAACCCCGAGTCCCTGGCGGTTTTCAGCCTCTGTGGTGGGGGTCTAGAGGGATTTTTCGCTTTGAAACACGCACGCTACACAATCACACTTCTCATCCGAACCAAGGGACACGATAATGACGTGCGCTCGCTGGATGACAAGGATGCGAAGAGCGCGCTCCACTACTTCACGCGGGAGCGCTTCAGCTTCGAAGCCATGCCTGTGAGCGAGAGCTGTGGGACCAAGGAAGGGCGCGGGCGCATGGATGCATCGAGGAAACACCGGCGTAAGGGTCGAGGGAACGGGAAACGCGACCGGCATGGTGTCACCCTGGACAGGGGCGAGGAGCGCAGCAGAGCGCACGGCAGAAGATGGTGGACGCAGTTGTCCAAACCTGCCTCTCCACCCTCACTGGGAAGTCGGCGCAAGAGATCGGTTTCGCGCGCCAGGCACGTGGAGCTCCTGCTGGTCGCAGATGAGTCCATGTCCAAGAAGTATGGCAAGGACCTGCACCACTACCTGCTCACGCTGGCCTCCATCGCTTCCAAGTTGTACGGCCATGCCAGCATCGAGAACCCCATCCGTCTGTCCGTTGTGAAGGTGACCATGGTcacggagaaggagaaggggctGGATGTGTCCAAGAACGCAGCCGCCACGCTCAAGAGCTTCTGCAAGTGGCAGAACCAGCAGAACCCACTGGACGACGACAACCAGCACCACCACGACGCCGCCATCCTCTTCACCAGGcagGACCTGTGTGGGCACCACTCGTGTGACACACTGGGCATGGCCGACGTTGGCACCATCTGTTCACCAGAGAGGAGCTGTGCCGTCATAGAGGACGACGGACTCCATGCCGCCTTCACCGTGGCACACGAGATAGGTCACTTGCTGGGCCTGTCTCACGACGACTCCAAGTTCTGCGAAGAGCGTTTCGGCGCCAGCGCGGACAAGCGTCTCATGTCGTCCATCCTGACCTCCATCGACGCCTCCAAACCCTGGAGCCGCTGCACCTCAGCTACCATCACGGACTTCTTTGACGATGGCAACGCCGAGTGTCTCCTGGACTCCCCCCGCCAGCCCCTGCTCGGCTCAGAGGAGCTGCCCGGCCAGAGCTACGACGCTGTGCGCCAATGCCGCCTGGCGTTTGGACCCGAGTACACGGTCTGCCCGGGCATGGATGTGTGCGCCCGCCTGTGGTGCGCAGTGATACGCCAGGGGCAGATGGTGTGCCTGACCAAGAAGCTGCCCGCCGTGGAGGGCACGCCGTGTGGCAAGGGTCGCATCTGCCTCCAGGGAAAGTGTGTGGACAAGACCCGCAAGAGACACTACTCGGCATCTAACCATGGTAGTTGGAGTTCATGGGGTCCGTGGGGGGCATGTTCGAGGACGTGTGGTGGAGGGGTGCAGTTTGCCCAGCGTCTGTGTAACAACCCGCCGCCCCGAAACAATGGGCGCTACTGCACCGGCAAGAGGGCCATCTACAAGTCCTGCAGTGTCATCCCGTGCCCCTCGCCCAGTAAGAGTTTCCGCCAGGAGCAGTGTGAGTTGCGGAACGGCCCCCAGACAGACCCTAAGGGGGTGAAGACCTTTGTGGAGTGGGTACCCAAGTTCGCAGGGGTGCTACCTAAAGATGTGTGCAAGCTGACCTGCCGGGCCAAGGGCACAGGCTACTATGTGGTGTTCTCGCAGAGGGTGGCGGACGGGACAGAATGTCGGCCTTAcagcagctcagtgtgtgtgaagGGCAAGTGTGTGCGTACCGGCTGTGACGGCATCATCGGCTCCAAGCTGCAGTTTGACAAGTGTGGCATCTGTGGAGGGGACAGCACCGGCTGCATCCGGGTGATAGGGAACTTCACCAAGAAGAGTAAGGGCTACACAGACGTCGTGAAGATCCCAGCGGGCTCCACCCACATCAAGGTCCGCCAGCACAAGCCCAAGGACCATCCCCGCTACACAGCCTACCTGGCCCTGCGTCGTCCCAGTGGCGACTACCTTCTCAACGGCAAGTTCATGATCTCTACCTCAGAGACGGTCATCCCCCTCAACGGCTCGGTGCTCAACTACAGTGGCTGGAGCCAGCGGGACGAGTGGCTACACAGCATGGGCCCTGGGGCCCTCAGAGAGGCCCTTACAGTTCAGATTCTGGCCACGGACGCCAAGAGGCCCCTGGATATCCGCTACAGCTTCTTCATGCCCCGTCGTGTTTCGGCTCCACCGCCACCACCTCCCCCGCACACCTCCACAACTAcacccaccactactactactacaacaaccaccTCTACTAGATCAAGCAGTAGAACCATATCGGCTCCGTTTTTGGCCCTGGCTCTCTCTACAGCCCCAGGGGTGTCGACGGCGGCGGCCTCTGGGCCCCAGTGGGTGACTGGCCCCTGGATGATCTGCTCCAGGACTTGTGACACAGGCTGGCAGAGCCGCACGGTGCAGTGCAAGGACCCGCAGGCCAAGCTGGCCAAGGGCTGCCCTCTGGGCGACCGCCTCTCCGCCTTCAAACAATGCCTGGTGAAAAAGTGTTGAGAGGACCAGAAACTAGACTCCCCTGAAAGTAGGgggtacacacagacagagagactggctATTGACAGTCAACCCCTCCTCTTCCCTACCCCTCCCACCCTACTATGCCAGGCCCTGCTTGGCACAGCTACAGACATACGACGGACACATGTGAACACTTCCGAATAGTGCAGCCGCCCAATCAGCAACCACCCACTTGTCACATCCCTCCTCTATCGGAAGGTTTTGTTTGTATTCCCCTGTTAATTACATGTTTTGTTTGCCTTCCTGTATGTTCTTGCTACTGTGGGTTTTTCATGATTTGTCCGCTTTGTCTCTTTGTCTTGCGTGACTGCACACCTCCGGACAATGGGCCTCCGTTCTGTCGAGGGGCAGTTTTTCTCCACTTCCTTTCGGGGTACCCCGTTTTTCTTCTTGCTCTACCCACTGACGATTCTCCACATACGTTTGGTCTATCCAACTTCCTGTTTGGATTGCGGACCAGGAAGTAGGCTGGGGGCACAACCAAGAGCAAACGATCCGTACTGTAACCAGTCCAGAAATGGGGTTGAACCGCACTGCAAACATCCCAGGTCAGAAAATGGACATGCAGTGATAGACTGAGTTGGGGCAGAGTTGTGCCCAACAGCTAGTGCTGAGCGATTTTAAACCTTCATTTTGTTTATTATTTtggtttttaaacaactaattgacagaCTTTGTTTCAATTATTTGGATCCCATGTAGTTATGTTTTATTCTGTGAACTCAATGTGCACATGGGGCAGTTTCTCTAgaaataaatcagatcaagcccaaACTATGCGATGGAGTTGGGAGTTGTAGTTTACATCAGGCCAATATTCTAAATAGTTTAGTGCAGAAAACATGCTAATTAACTACAATGATCATAATGGATTGCGTGCGTACTTGTCCGATCTGTgtgtttcttttatgcctgctacatcAGGTTAGTACAGAAGAAGGCGCAttcgagagggaaagagagcagtTACATTGCgaagtatctctacctgaaaatgcATAGTCTAAGGggttgatagttggtattcagtagtcataaaagtatgccttatttactttgaagaactactaaaatactGATTTTGTCAGAccgcataggcagcagctctacaggaaggacttggaattaaataataaagtcGTCAAATTAAACAAGTGTAAtataaacaactgaaatatttgagTAATTGATAAGTAGTACTGGGCAGTCGCTATCATTATTacttgttttattctgtgttacagcattcaacccacataatgcatagtgcatttaataTTTTCAGAAATGGTTTGAAATCGAAAACcatgatttatattttaataATCGAACCGAaaccgaaccgacctcaaaaagcactaatcgctcagcactaccaaCTGCCAATGCCCAGTGACACCTATAGAGTGACACTGGGCCAAGAGACCATGGTGAACCTTCAACTCTGACCTTTGTGGAGGTTAAAGGTTGTAATTATATAGGATTACATAATGTGTGGGGCTAAGCTTGACATTTGagtgtttgtctttgtgtgtatGGGTTTGTTTATATTGTGAACATACACGTGTGAACATACAGTGTTTTTGTCATACTCAGTGTCCTAAACTCTTTTAATGGACTTTAACCCTCAGTTCCATTTGTATCACTATGCGGGTGCTAGAGGGTCGCTACCATTTTGTCACTATGTTTATTTGGCTCTACACGtccgtctgtctttctgtctgtttgtctgattAGGAAAAAAGCAATTCTTGCTAGTATGACAATGTGTGCACTGGATACTCGCAAATACAGCAAGAGGGAAACTAACCCAGTCATACCTGACCAAATACACttctacagctctctctctctcaacatattgaCACATTCTTGTTTAAGCTATCCATTTCTCTCACTCTGACATCCACTACCATCCATTCTctgtcatccctctatccctcatgAGCTTGTAATGCGAAACCACACACCCTTTGACGGGTGGTGATAGACATGCAATATACTGGATACATATGGGATCTTGCAACATAGGCACAACTCACTGTTTGTCatacacaggcacagacacacattgaCATAAAGAATACACAACACCCCCAAATGACTTAATTAAGAGTATTTTCACTGTATTAGGCCCACATTAACGCATAATACAcacatattttacacacacattttaaCTCGCACAATACATGTTTAGATAGAAGCAACAGTATCACATATGTACAGAATACattttgcacacacacatatgtttAAAAAATTCCACCgcacgcatgcaaacacacacacacaccaatatagTGTATCTGTATTACTGTTTGACACTTCCCATGGGAAAAGACCCTTTCGTTGAACGACAGAAACACAGCACTGAACTTGTAATTTATTGTTTGTACAACTGGTATGTGAAAAAAAGAACCATGTGAtgaatttatttattattatggtAATGTTGTATCATGTTTACTATTTAACTAATAATATGACTGTGCAGAATAATTCATTTTGAAGAAAATTGTGCTTTCTAGTCATCTACATGAATATATGtacataaaatgtatatatttaaaa

Function

NR:

description
A disintegrin and metalloproteinase with thrombospondin motifs 5-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08620 ADAMTS5; a disintegrin and metalloproteinase with thrombospondin motifs 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983087.1 True 6043 mRNA 0.50 8 26060369 26085630

Neighbor

gene id symbol gene type direction distance location
adamts1 adamts1 coding downstream 4922 26047765 ~ 26086045 (-)
cyyr1 cyyr1 coding downstream 14911 26035647 ~ 26045458 (-)
appa app coding downstream 35053 25983669 ~ 26025316 (-)
atp5pf LOC106575112 coding downstream 83162 25973398 ~ 25977207 (-)
pard3ba pard3b coding downstream 334799 25550621 ~ 25725570 (-)
LOC110527587 LOC106575119 coding upstream 10523 26096153 ~ 26139949 (-)
gart gart coding upstream 462039 26547669 ~ 26571079 (-)
LOC110527590 LOC106575121 coding upstream 490342 26575613 ~ 26585525 (-)
LOC110527591 LOC106575122 coding upstream 644008 26729638 ~ 27142641 (-)
fam155a fam155a coding upstream 1536076 27621706 ~ 27691752 (-)
G590313 LOC106575108 non-coding downstream 110972 25939371 ~ 25949397 (-)
nrp2a nrp2 non-coding downstream 560002 25432371 ~ 25500367 (-)
G590397 NA non-coding upstream 9328 26094958 ~ 26095403 (-)
G590430 NA non-coding upstream 60532 26146162 ~ 26146514 (-)
G590539 NA non-coding upstream 151029 26236659 ~ 26236859 (-)
G590584 NA non-coding upstream 184703 26270333 ~ 26270869 (-)
G590597 NA non-coding upstream 192947 26278577 ~ 26278814 (-)
G589705 NA other downstream 514951 25544735 ~ 25545418 (-)
LOC110527565 LOC106575142 other downstream 769764 25215219 ~ 25290844 (-)
G589529 NA other downstream 781495 25201406 ~ 25278874 (-)
G589093 NA other downstream 1081262 24971613 ~ 24979107 (-)
G588987 NA other downstream 1231669 24828488 ~ 24828700 (-)
G590443 NA other upstream 72363 26157993 ~ 26158305 (-)
G591808 NA other upstream 1080545 27166175 ~ 27166468 (-)
G592298 NA other upstream 1397327 27482957 ~ 27483780 (-)
G594636 LOC106593246 other upstream 2938777 29024407 ~ 29026049 (-)

Expression


Co-expression Network