gart (gart)


Basic Information

Item Value
gene id gart
gene name gart
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 26547669 ~ 26571079 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608972.2
TTGCTAGTTTCGACTAGCAATTTAACGCTGCAATACCCCGCGCGCTTACTGCCCGCGTGCACACAGGGTAGTCTCCCCTAGCTGTGGGCAAGGAAAGTACATCTGGACGTGGGCTCTGTCATCAAAAAATACTAACTCCCCACTACACAAGATACATTTGCCATGGCAGTGCGGTTGCTAGTGATTGGAAGTGGTGGGCGGGAACACACCTTGGCATGGAAGCTGGCACAGTCACCACACATCCAGCAGGTCCTGGTGGCACCAGGGAACGCTGGCACCGCCAACTGTGGAAAGATCTCCAACTCTGAGGTATCTGTGAGTAATCACTCCATCCTGGCTCAGTTCTGTAAGGAGCATAGCGTGGGGCTGGTGGTGGTAGGGCCCGAGGTGCCTCTCGCAGCAGgcatgGTAGATGACTTGCAAGCGGCAGGGGTCCCGTGTTTCGGCCCCTCAGCGAAGGCTGCCCAGCTGGAGGCCAGTAAGAGTTTCTCCAAGGCCTTTATGGACCGTCACGGCATCCCCACAGCCAACTGGTGCTCCTTCACCGACCCCCAGGAGGCCTGCAGCTACATCCGCACgGCCAGTTTTCCTGCTCTGGTGGTGAAGGCCAGCGGCCTGGCTGCAGGGAAGGGTGTCATTGTGGCCAAGGACCAGGAGGAGGCTTGCCAGGCTGTGCTGGACATTATGAAGgacaAAACGTTCGGCTCTGCCGGGGAGACTGTAGTGGTGGAGGAACTACTGGAGGGAGAAGAAGTGTCTTGTCTGTGTTTCAGTGATGGCTGCAGTGTGTCCCCCATGCCCCCGGCCCAGGACCACAAACGCCTGCAGGACGGGGACCTGGGCCCCAACACGGGTGGCATGGGGGCCTACTGCCCCAccccccagGTGTCTCAGGAGCTTTTGCAGCAGATCAGAGAGACTGTCCTCCAGAAGACTGTGGATGGCATGAAGGAGGAGGGAACCCCCTATGTGGGTGTGCTGTATGCTGGGCTGATGTTGACCAAGCAGGGGCTGAAGGTCCTGGAGTTTAACTGTCGCTTCGGCGACCCAGAGTGTCAGGTGCTGATGCCCTTGCTGAAGAGTGACCTGTATGAGGTGCTCCAGAGCACCCTGGAGGGGAAGTTGGCATCCAGTCCACCTGAGTGGCACCAGGACAGGTCTGCAGTTACTGTGGTCATGGCCAGCCCTGGCTACCCCGGCTCCTATAAGAAAGGTGTCGCAATCACTGGTCTGTCTCAGGTGGAGGAGACAGGGGTGCAGGTGTTCCACGCTGGCACGTCGCTGAAGGAAGGGGGTGTTGTCTCCAGCGGGGGGCGTGTCCTCACTGTCACCGCTGTTAGGTCGTCTCTGGAGATGGCCCTGCACGCAGCCAATCGGGGTGTGGCCGCTGTGGGGTTCCCGGGAGCCGTGTACCGACGTGACATCGGTCACCGAGGCATCGCCCACCTCGCCCAGcacagAGGCCTAACTTATAAGGACAGCGGAGTGGACATCGCGGCGGGAAATCGACTGGTAGACATGATCAAGCCATTTGCCAAGGCCACCTCTCGCTCAGGGTGTAACGCTGAGTTGGGGGGCTTTGCCGGGCTCTTTGATCTCAAAGCTGCAGGCTTTATTGACCCCATCCTGGTGTCTGGGACAGACGGAGTAGGGACCAAGCTCACGATTGCCCAGGCATGCCAGCAGCACAGCACCCTGGGACAGGACCTGGTGGCCATGTGTGTCAACGACGTGCTGGCCCAGGGGGCGGAGCCTCTCTTCTTCCTGGACTACTTCTCCTGTGGCCGTCTGGATGTGGGTGTGGCCTCCGCTGTGATCAGGGGCGTGGCCGAGGCCTGCTGTTTGGCGGGCTGCGCTCTGCTGGGCGGGGAGACTGCGGAGATGCCTGGCGTGTACGGCCCCGGCGAGTACGACCTGGCAGGGTTCTGTGTTGGGGCGGTGGAGAGGGGCGCCCTGCTACCCAGGCTGGGGGACATCTGCGAGGGGGACCTACTCATCGGGGTGGCCTCCTCGGGGGTGCACAGCAATGGATTCAGCCTCGTTCGGAAGGTCCTGGAGAGGGCAGGAGTCACCTACAGCTCCCCTGCACCTTTCGGGAAACCTGGACAAACTGTGGGCGAGGTTCTCCTGACGCCTACTAAGATCTACAGCCGCCTGCTCCTGCCAATCTTGAGCAGCGGCGCCATCAAGGCCTATGCCCACATCACTGGGGGCGGCCTATTGGAGAACATCCCCCGAGTCCTGCCTCAGGAACTGTCCGTTGacctggACGCCTCCCGTTGGATCATCCCTCCTGTGTTCTCATGGCTCCAGGAGGAGGGGGGCTTGTGCGAGGAGGAGATGGGGCGCACCTTCAACTGTGGCCTTGGGGCCGTGCTGGTGGTGGCCTTTCCGGATGCCCAGAGTGTTCTGAGGAAGCTCCAAGCCCACGAGGATGCGTGGATCGTGGGCTCGCTGGCCCACAAGCAGCCTGGGGCCGAGCCGGTGGTGATCAGGAACCTGAAGCACAGCCTGCGTTTAGGCCCCTCTCCCTGTGTAGTAGACCTGGGGCCCATGCAGAACGGAGCATCTCAAGGGGACAGCAGTAGCACCGTCCCCCGCAAGAGGACCAGGGTGGGCGTCCTCATCTCAGGCACAGgcaccAACCTGCAGGCACTGATGGAGCAGACCAAGAGAACGTCCAGCTCAGCAGAGATCGTGGTGGTGATCTCCAACCAGCCAGGGGTCTTGGGCCTCAAAAGGGCCTCTCTGGCTGGCATTCAGACACGGGTGGTTGACCATAAGCTGTACGGTAGCCGGGCAGAGTTTGACGGCACCATTGACCACGTGCTGGAGGAATTTGATGTGGAGGTGGTGTGTCTCGCCGGTTTCATGAGGATCCTCACAGGGTCCTTCGTCAGGAAGTGGAACGGAAAACTGCTGAACATCCATCCGTCCCTGCTGCCCTCATTCAAGGGGGTGAATGCCCAGAAGCAGGCTCTGCAGGCGGGGGCACGGGTCTCTGGCTGCACCGTCCACTTTGTGGCTGAAGAGGTTGATGCCGGGGCCATCATTGCTCAGGAGGCAGTGCCGGTGTTGATGAATGATACTGAGGAGAGTCTATCAGATCGCATCCGGGAGGCAGAGCACCGGGCCTTCCCTGCCGCCCTGGAGCTGGTGGCCGGGGGCGGCGTGAGGCTGGGGGATGACGGACGCATCATCTGGAACCCCAACGCACAGGGCTAAACCTCAACACAATACCACCACACCTGCCCCAACACACCCTGGCCTCCATCCCCAAAATACCTTAACCCCCTACCTCAGAATACATTGGGGCCCCACCTAAAAGCAGTGGCTCTACTGACCTGCATAGTAAATGGATTGCCTTAGTGTAAGCAATGTCTCCCATGACCATACCTCCCTCATCTCGGGTAGCTACAAACTGGTTTCTTCCAGATACATTCCTTGTGCCATTGCTACAATGTCGAAATAACTAAGTAATTCCCCTTGTGCACATTCCATGGGTACTATTATGTAAGAATATTACAGTAGTACTTGCCCTATAATTGTAGGTATATCCTCAACATTGCATGACCAGTCATAGCAAGTCGTAGTATGATTATCGCGAAGTGGGTCACGGTTGTTCTCTGCATATACTTTAACACTTAGCGACAATGCCAAAACTGTTATTTCTGCCTGTCCTTGCATTAAACTTGCGCTGTTGAACAA

Function

symbol description
gart Predicted to enable phosphoribosylamine-glycine ligase activity and phosphoribosylformylglycinamidine cyclo-ligase activity. Acts upstream of or within camera-type eye development; chordate embryonic development; and pigmentation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytosol. Is expressed in several structures, including alar plate midbrain region; digestive system; nervous system; pigment cell; and yolk syncytial layer. Orthologous to human GART (phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase).

NR:

description
trifunctional purine biosynthetic protein adenosine-3

GO:

id name namespace
GO:0009113 purine nucleobase biosynthetic process biological_process
GO:0006189 'de novo' IMP biosynthetic process biological_process
GO:0032259 methylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0008168 methyltransferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004637 phosphoribosylamine-glycine ligase activity molecular_function
GO:0004641 phosphoribosylformylglycinamidine cyclo-ligase activity molecular_function
GO:0004644 phosphoribosylglycinamide formyltransferase activity molecular_function

KEGG:

id description
K11787 GART; phosphoribosylamine--glycine ligase / phosphoribosylglycinamide formyltransferase / phosphoribosylformylglycinamidine cyclo-ligase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608972.2 True 3708 mRNA 0.59 21 26547669 26571079

Neighbor

gene id symbol gene type direction distance location
LOC110527587 LOC106575119 coding downstream 407720 26096153 ~ 26139949 (-)
LOC110527586 LOC106574337 coding downstream 462039 26060369 ~ 26085630 (-)
adamts1 adamts1 coding downstream 492222 26047765 ~ 26086045 (-)
cyyr1 cyyr1 coding downstream 502211 26035647 ~ 26045458 (-)
appa app coding downstream 522353 25983669 ~ 26025316 (-)
LOC110527590 LOC106575121 coding upstream 4893 26575613 ~ 26585525 (-)
LOC110527591 LOC106575122 coding upstream 158559 26729638 ~ 27142641 (-)
fam155a fam155a coding upstream 1050627 27621706 ~ 27691752 (-)
LOC110527595 lig4 coding upstream 1132374 27703453 ~ 27707840 (-)
irs2a irs2 coding upstream 1172884 27741604 ~ 27765935 (-)
G591323 NA non-coding downstream 3413 26543995 ~ 26544256 (-)
G591322 NA non-coding downstream 3989 26541989 ~ 26543680 (-)
G591314 NA non-coding downstream 14925 26532434 ~ 26532744 (-)
G591305 NA non-coding downstream 28143 26519309 ~ 26519526 (-)
G591304 NA non-coding downstream 28913 26518463 ~ 26518756 (-)
G591348 NA non-coding upstream 25935 26597014 ~ 26597276 (-)
G591349 NA non-coding upstream 26754 26597833 ~ 26598097 (-)
G591403 NA non-coding upstream 111202 26682281 ~ 26682605 (-)
G591413 NA non-coding upstream 129612 26700691 ~ 26700913 (-)
G590443 NA other downstream 389364 26157993 ~ 26158305 (-)
G589705 NA other downstream 1002251 25544735 ~ 25545418 (-)
LOC110527565 LOC106575142 other downstream 1257064 25215219 ~ 25290844 (-)
G589529 NA other downstream 1268795 25201406 ~ 25278874 (-)
G589093 NA other downstream 1568562 24971613 ~ 24979107 (-)
G591808 NA other upstream 595096 27166175 ~ 27166468 (-)
G592298 NA other upstream 911878 27482957 ~ 27483780 (-)
G594636 LOC106593246 other upstream 2453328 29024407 ~ 29026049 (-)
G594762 NA other upstream 2845776 29416855 ~ 29495130 (-)

Expression


Co-expression Network