LOC110527597 (rab20)


Basic Information

Item Value
gene id LOC110527597
gene name rab20
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 27781937 ~ 27785215 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608983.2
ACGTCCAGCAGTCGTTCGCACAAGTTTCCCCTGTTGTCATTTTCTGAGTGAACTCTGATCATTGAGCAAGCTGTTTCACAATTTCATTGATATATCCGTTCATGTAGAAACGAGTCGTATGCCTTTTATTCTGCGGTGGATGCTAAATGGGTAGAAGTTGACGCACGGTTGGTGTGGTAAATCCTATGCATTCTTTCGCTTTAGACCTACACATGTTCTATGCATGTCAAAACCGAAGGCCACCTGACAGACTGGAACAGTAGGGAATCTTAATTGCTTTGACAATTTTATCAAATACGTTTTTAATGAAAGTCAATTGCACTTTTGAGATAGTGTCGCCTGTTCGGGTGTCTAGGCGGAGAATGAAAAGAACCATGCCTGAAATGAAAAGGGCGAGGAGGCCCGACGTGAAACTGGTTATATTGGGGGACATGAACGTTGGTAAGACCTCTCTGTTACACAGGTACATGGATAAAAAGTTCAATGATACCATTAGTACCGTCGGCGGTGCGTTCTACTTAAAGCAGTGGGGACCCTACAACATATCGCTTTGGGACACCGCAGGTCGGGAGCAGTTCCACGGGCTCGGCTCCATGTACTGTCGGGGTGCGTCCGCTGTCATCCTTACCTACGACGTGACCAACTGGCAGAGCCTGGCCGAGCTGGAGGAGCGCTTCCTGTCTCTCACCGACACAGCCAATCACGACTGCATCTACGCTGTGGTGGGCAACAAGGCTGACATTACTGACCCCCCCAATGTGGAAGAAGACTATGAGGGGGGTTTCCCCGTTCACACACCGCCCTATGCCTGCCACCTCATCCCTCCAGCCTCCCCTACTACGGTCTCCCCCGTGGCCAACCGAGAGGTTCGAAAGGAGGACGCCGTGGCGCTCTACCAGCGTATCCTCAGGTACAAGGCGCTGGATGAGCGTTTGAGCCCGCCTGCAGAGAGGATGTGCTTTGAGACGAGCGCCAAGACAGGTGCCAACGTGGACGAGTTGTTTGAGACGCTGTTCGAAATGGTGCTGCCGTCCATCCTGAGGATGAGGTCGGAGAGCGAGGCCTCACCCACCATAGACCTGGAGGACTATGGGCCAGTGTCCAGCAAGCAAACCAAGTGGGGCTGCTGCTGAACGGAGTTGGGTGAAGTAGCCCCAAGGTGCTGATCTTGGGTCTATTTTGCTTTTTTCCCACAAATGGGTAAGGTTAGGATTgtgggaggggaagctgatcctagatctgtacattGGGGAACCTTTACACCAGAGCCTGCTGAAGGCGACAAGGAAGAAGTCttggggagaatctcaattgtatACTCCTCGCCTCTTCTCGCCTAGTATTCTTCTCATAACCCATTGAATGAGAAAGCTAGAGGTCCCTTCCCTCTGACCAGCTCCTCCAATAGGttttgagatggagagaggatgcgaggagtatgcaattgagaatCTTCCCTGGTTTTAGGGGTTGGTTTTCACAGACGTACACCCACGTTGTTTCTACTTTAATACAGAGGGATTACTCATCAAGTGAGCTCAACTGAGCTGGGCCGGATTACCGAACAGGCACTGGGCATGTGCCCCGTGCCCCTAACCCATGTTTTTGTTGCATATGAtaccaaaatgtgtagaattgtaggaaattaggcttaaaactgcaaaattatcttaacctcatggcaaaatgtgaacaAAATGAGATGCGCTATAAAAtaccaacaaaacaaaaaatctgCCCAATGGCGAaagtgtagaattgtaggaaattggCTTTAAAACTATTTGTCAAAATTTGCTCTTAGCCTCATGACAAAATGCGTAGAAGAGCATTAGAAAACTTCACGTTTTTCTCTCtgcaccatggcaaaatgtgctAATTCTGTAATTAAGTCCAGTATTCTGTCACTGCTGTTCAGATTTCATTTTATGGTTTCACACTAAAAaggaaatgtcactttttttttaatggtttttTAGTCAATTCTGATCTTGGGGAATTTTTGGACTGAGTTGCACAAAAAATGTCACTTGTCTGAGCTGTTTGTCCTTGATAGAAAAATGCAGTTTCACTTGATTTTTGTGGCATTTGCCATTTTCAGACACCTTTTTATTTCTTTATCTTTGTTTACCATCTGCCTAAATTAAAGCCATTCTACCTCCAATAATAGTTATTGAATTTCAGCTTTCTGTGAATaacatgttttttaaatttttgaaGTCACCATGTTGTTATTGAACATATGGTGTAAAGATGCTACCACAAGGGTGTAGTGTAGGGACTGTTTTTAGAGAGCTCCCATTGAATATGGAGGACTAAGAATATGGCCAAAGAACCAAAATGTCCTCTTTACCCCAAAGACATTATGTTGCCACATTGACTAAGAAATCGAACAGAATTGATGTACTGGCGAGTCCCTGATGAGATTTCAAACAA

Function

symbol description
rab20 Predicted to enable GTPase activity. Predicted to be involved in intracellular protein transport. Predicted to be active in endomembrane system. Is expressed in pronephric duct. Orthologous to human RAB20 (RAB20, member RAS oncogene family).

NR:

description
ras-related protein Rab-20-like

GO: NA

KEGG:

id description
K07911 RAB20; Ras-related protein Rab-20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608983.2 True 2436 mRNA 0.45 2 27781937 27785215

Neighbor

gene id symbol gene type direction distance location
irs2a irs2 coding downstream 16002 27741604 ~ 27765935 (-)
LOC110527595 lig4 coding downstream 74097 27703453 ~ 27707840 (-)
fam155a fam155a coding downstream 90185 27621706 ~ 27691752 (-)
LOC110527591 LOC106575122 coding downstream 639296 26729638 ~ 27142641 (-)
LOC110527590 LOC106575121 coding downstream 1196412 26575613 ~ 26585525 (-)
LOC110527596 cars2 coding upstream 728 27785943 ~ 27795724 (-)
ankrd10a ankrd10 coding upstream 16862 27802077 ~ 27853519 (-)
LOC110527600 LOC106575132 coding upstream 105191 27890406 ~ 28034304 (-)
LOC110527106 LOC106575135 coding upstream 390818 28176033 ~ 28177839 (-)
LOC110527603 LOC106575136 coding upstream 514492 28299707 ~ 28306319 (-)
G593896 NA non-coding downstream 46930 27734612 ~ 27735007 (-)
G592458 NA non-coding downstream 68734 27712903 ~ 27713203 (-)
G592457 NA non-coding downstream 69128 27712529 ~ 27712809 (-)
G592456 NA non-coding downstream 69537 27712075 ~ 27712400 (-)
G593970 NA non-coding upstream 86150 27871365 ~ 27874514 (-)
G593982 NA non-coding upstream 102088 27887303 ~ 27888964 (-)
G593987 NA non-coding upstream 109080 27894295 ~ 27894508 (-)
G593988 NA non-coding upstream 110253 27895468 ~ 27895771 (-)
G592298 NA other downstream 298157 27482957 ~ 27483780 (-)
G591808 NA other downstream 615469 27166175 ~ 27166468 (-)
G590443 NA other downstream 1623632 26157993 ~ 26158305 (-)
G589705 NA other downstream 2236519 25544735 ~ 25545418 (-)
G594636 LOC106593246 other upstream 1239192 29024407 ~ 29026049 (-)
G594762 NA other upstream 1631640 29416855 ~ 29495130 (-)
G594900 NA other upstream 1782986 29568201 ~ 29593462 (-)
G594905 NA other upstream 1804778 29589993 ~ 29625899 (-)
G594906 NA other upstream 1814416 29599631 ~ 29612736 (-)

Expression


Co-expression Network