LOC110527596 (cars2)


Basic Information

Item Value
gene id LOC110527596
gene name cars2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 27785943 ~ 27795724 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608981.2
CGAGATCTGGACGTGTGGAACAAGGCTAGTTGTGAACGGGATGCAACTTTGTTACGCCGAGTAGCAGCTTTCAAGATTCGGTTTATGCACGTGCACTTTACAATCAAATATTGAAGCATGTCGAGGTAGCGATCAGGCACAACGGACGACTTAACGACACATTTGGAAGTGGCAGTTGAGTTGCCTGCTAATCTACATTACTTAGATTTATTGAGAACTGTCAAGCTAGGTAGCTACTTGTCTGTCATACTTGACACGAGAGACTGGAAGAGTGGCTCCGTCGCCAGGTACATCCTATTATTTTGCACTCAGTTGTAGCCATGTGGCCCTGCATAACAATATGTAGGCCGCTTCTATTGAAATTAAGAAGCAGGTATGCTTTCTCAAAGGACACTCGGCAAACGTTAGTGTCACCAAGCAAACTGATCTTCAGACCCAGTGCATCATGTACAGGGGTGGGGAAGAAATGGACTCGACCAACAGGATACGACACGGGGCTGAAGACCTACAACAGCCTCACCAAACAGAAAGAACCACTGGTATTGGCGCAGGAAGGAATTGCTACTTGGTACAGCTGTGGACCCACTGTTTACGACCATGCTCACCTGGGGCATGCATGTTCCTATGTCAGATTTGACATCATCCAGAGGGTTCTATCCAGGGTCTTTGGCATCAATGTCATTCATGTCATGGTCATCACTGACATCGATGATAAAATCATTAGAAGAGCTTTGGAGAAAAGCATATCTCCAACAGTCCTGGCCAGAATGTACGAGGAGGAATTTAAAAATGACATGTTAGCCCTGAAGGTTCTTCCTCCTGCTGTGTACTTGAGGGTCACTGAGAATATACCTCAAATCGTGGCTTTCATTGAGGGCATCATCAGAAATGAACACGCCTATGCCACAAAACAAGGGGACGTGTATTTCGATATCGGGTCCATCGGGGACCGTTACGGCAAGCTTATGGGTGCTGGAGATGCAACTGGTGAGCCTGGGGACAGAGAGAAACGGGACAGCCGAGATTTTGCCCTGTGGAAGGCTTCCAAGCCGCAGGAGCCCTCCTGGGAGTCTCCCTGGGGCAAGGGAAGACCCGGCTGGCACATCGAATGCTCCACCATTGCCAGCTCTGTGTTTGGAAGTCAGCTGGACTTTCACTCTGGGGGCATCGATTTGGCCTTCCCTCACCATGAGAATGAGATCGCCCAGTGTGAGGCCTACCACCAGTGTGGCCAGTGGGGGAACTACTTCCTGCACTCAGGACATTTACATCTTAAAGGAAGTGCTGAGAAAATGTCAAAGTCCTTGAATAATTATATAACGATAAAGGATTTCCTGGAATCTTACTCCGCCAATGAATTCCGAATGTTCTGTCTTCTGACCAAATACAGATCAGcaATCGACTACAGTGACGCCAGCTTAAACGAAGCTCGGAGCTCCCTGGCAACCATTACTGCCTTCACCCATGATGCCCAGGCCTACATGAGGGGCCAGTTGCAGTGCCCGGCTGTGGAGGAGGGGGCATTATGGGAAAGGTTAGCTGAAACCAAAGCAAACGTTGTCAGAGCACTGGCAGATGACTTTGATACGCCAAGGGTTGTTAATGCCATCATGAGCCTTGTTTACCATGGGAACCGCCAACTTCAGCCCatcactaagCCTGACAGATCACCAAGGAGCCCAGCTGTGTTTGGGGCCTTCCTCGCCTACATCAGGGAAGTCTTTGAGGTCCTGGGGGTCGACCTGCTGGACAGAAAGGAGGCTCATTCTGTTGATTCTTCGGGGACCCTAGAGAACGTGGTGGAGCAGTTGGCTCGTTTCCGTAGCGATGTGCGGGCCTTCGCTTTGTCTGTGCAAGAAACGCCCCCTGGAGAGCCCGCCCATGCCAGTCCAAGTCCATGCTCAGAAAAGTTACCCCTCCTCAAGGCCTGCGACACCCTGCGGAAAGACCTTGCATCTATGGGAGTGCACATAAGGGACAGAGGCCCCAACTCCACGTGGGAGATTTCGCAGAAGAGGCCAGCTGGCCAGGACAAGAAATAATAGAACAGAATTGCAAATAGAATGAGCTTAGATTGAGTTTTGTATGTCCTGGTTTGGATGAAGATTGAGGACTACCACAAAGACTGGGAGACATGGAATTGTGGGTTAGAGCTGCTATGATGTTGACTGTTTCCTCAGGACTTCGGAAGGATTGGTATAAAGGAATTTGTCATAGGGCAGGTTGGACTATATCACCGGCATTGGAAATTATACTATCGCATAGTTATAATTTTGTCATAAAATTATACTTAGGTCTGCAATAAAGTGTTGATAGAATTGTATATAAAATATTGTTAATGTAAAATATTTTTCACCATAAGCTACTTGATTCAAAGTAAAATGTATTTCAGGGGAATGACTCAAATGTGTAAATCTTTTGAAATCAGAATTGTCCAATTATTCCTGTGCAAAATGCCATTTAAATTAATACACActaaaacaaaatataaa
>XM_021608982.2
gCGAGATCTGGACGTGTGGAACAAGGCTAGTTGTGAACGGGATGCAACTTTGTTACGCCGAGTAGCAGCTTTCAAGATTCGGTTTATGCACGTGCACTTTACAATCAAATATTGAAGCATGTCGAGGTAGCGATCAGGCACAACGGACGACTTAACGACACATTTGGAAGTGGCAGTTGAGTTGCCTGCTAATCTACATTACTTAGATTTATTGAGAACTGTCAAGCTAGGTAGCTACTTGTCTGTCATACTTGACACGAGAGACTGGAAGAGTGGCTCCGTCGCCAGGTACATCCTATTATTTTGCACTCAGTTGTAGCCATGTGGCCCTGCATAACAATATGTAGGCCGCTTCTATTGAAATTAAGAAGCAGGTATGCTTTCTCAAAGGACACTCGGCAAACGTTAGTGTCACCAAGCAAACTGATCTTCAGACCCAGTGCATCATGTACAGGGGTGGGGAAGAAATGGACTCGACCAACAGGATACGACACGGGGCTGAAGACCTACAACAGCCTCACCAAACAGAAAGAACCACTGGTATTGGCGCAGGAAGGAATTGCTACTTGGTACAGCTGTGGACCCACTGTTTACGACCATGCTCACCTGGGGCATGCATGTTCCTATGTCAGATTTGACATCATCCAGAGGGTTCTATCCAGGGTCTTTGGCATCAATGTCATTCATGTCATGGTCATCACTGACATCGATGATAAAATCATTAGAAGAGCTTTGGAGAAAAGCATATCTCCAACAGTCCTGGCCAGAATGTACGAGGAGGAATTTAAAAATGACATGTTAGCCCTGAAGGTTCTTCCTCCTGCTGTGTACTTGAGGGTCACTGAGAATATACCTCAAATCGTGGCTTTCATTGAGGGCATCATCAGAAATGAACACGCCTATGCCACAAAACAAGGGGACGTGTATTTCGATATCGGGTCCATCGGGGACCGTTACGGCAAGCTTATGGGTGCTGGAGATGCAACTGGGGACAGAGAGAAACGGGACAGCCGAGATTTTGCCCTGTGGAAGGCTTCCAAGCCGCAGGAGCCCTCCTGGGAGTCTCCCTGGGGCAAGGGAAGACCCGGCTGGCACATCGAATGCTCCACCATTGCCAGCTCTGTGTTTGGAAGTCAGCTGGACTTTCACTCTGGGGGCATCGATTTGGCCTTCCCTCACCATGAGAATGAGATCGCCCAGTGTGAGGCCTACCACCAGTGTGGCCAGTGGGGGAACTACTTCCTGCACTCAGGACATTTACATCTTAAAGGAAGTGCTGAGAAAATGTCAAAGTCCTTGAATAATTATATAACGATAAAGGATTTCCTGGAATCTTACTCCGCCAATGAATTCCGAATGTTCTGTCTTCTGACCAAATACAGATCAGcaATCGACTACAGTGACGCCAGCTTAAACGAAGCTCGGAGCTCCCTGGCAACCATTACTGCCTTCACCCATGATGCCCAGGCCTACATGAGGGGCCAGTTGCAGTGCCCGGCTGTGGAGGAGGGGGCATTATGGGAAAGGTTAGCTGAAACCAAAGCAAACGTTGTCAGAGCACTGGCAGATGACTTTGATACGCCAAGGGTTGTTAATGCCATCATGAGCCTTGTTTACCATGGGAACCGCCAACTTCAGCCCatcactaagCCTGACAGATCACCAAGGAGCCCAGCTGTGTTTGGGGCCTTCCTCGCCTACATCAGGGAAGTCTTTGAGGTCCTGGGGGTCGACCTGCTGGACAGAAAGGAGGCTCATTCTGTTGATTCTTCGGGGACCCTAGAGAACGTGGTGGAGCAGTTGGCTCGTTTCCGTAGCGATGTGCGGGCCTTCGCTTTGTCTGTGCAAGAAACGCCCCCTGGAGAGCCCGCCCATGCCAGTCCAAGTCCATGCTCAGAAAAGTTACCCCTCCTCAAGGCCTGCGACACCCTGCGGAAAGACCTTGCATCTATGGGAGTGCACATAAGGGACAGAGGCCCCAACTCCACGTGGGAGATTTCGCAGAAGAGGCCAGCTGGCCAGGACAAGAAATAATAGAACAGAATTGCAAATAGAATGAGCTTAGATTGAGTTTTGTATGTCCTGGTTTGGATGAAGATTGAGGACTACCACAAAGACTGGGAGACATGGAATTGTGGGTTAGAGCTGCTATGATGTTGACTGTTTCCTCAGGACTTCGGAAGGATTGGTATAAAGGAATTTGTCATAGGGCAGGTTGGACTATATCACCGGCATTGGAAATTATACTATCGCATAGTTATAATTTTGTCATAAAATTATACTTAGGTCTGCAATAAAGTGTTGATAGAATTGTATATAAAATATTGTTAATGTAAAATATTTTTCACCATAAGCTACTTGATTCAAAGTAAAATGTATTTCAGGGGAATGACTCAAATGTGTAAATCTTTTGAAATCAGAATTGTCCAATTATTCCTGTGCAAAATGCCATTTAAATTAATACACActaaaacaaaatataaa

Function

symbol description
cars2 Predicted to enable ATP binding activity and cysteine-tRNA ligase activity. Acts upstream of or within gonadotrophin-releasing hormone neuronal migration to the hypothalamus. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 27. Orthologous to human CARS2 (cysteinyl-tRNA synthetase 2, mitochondrial).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K01883 CARS, cysS; cysteinyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608981.2 False 2492 mRNA 0.47 15 27785943 27795723
XM_021608982.2 True 2484 mRNA 0.47 15 27785943 27795724

Neighbor

gene id symbol gene type direction distance location
LOC110527597 rab20 coding downstream 728 27781937 ~ 27785215 (-)
irs2a irs2 coding downstream 20008 27741604 ~ 27765935 (-)
LOC110527595 lig4 coding downstream 78103 27703453 ~ 27707840 (-)
fam155a fam155a coding downstream 94191 27621706 ~ 27691752 (-)
LOC110527591 LOC106575122 coding downstream 643302 26729638 ~ 27142641 (-)
ankrd10a ankrd10 coding upstream 6353 27802077 ~ 27853519 (-)
LOC110527600 LOC106575132 coding upstream 94682 27890406 ~ 28034304 (-)
LOC110527106 LOC106575135 coding upstream 380309 28176033 ~ 28177839 (-)
LOC110527603 LOC106575136 coding upstream 503983 28299707 ~ 28306319 (-)
LOC110527604 LOC100196534 coding upstream 785464 28581188 ~ 28615643 (-)
G593896 NA non-coding downstream 50936 27734612 ~ 27735007 (-)
G592458 NA non-coding downstream 72740 27712903 ~ 27713203 (-)
G592457 NA non-coding downstream 73134 27712529 ~ 27712809 (-)
G592456 NA non-coding downstream 73543 27712075 ~ 27712400 (-)
G593970 NA non-coding upstream 75641 27871365 ~ 27874514 (-)
G593982 NA non-coding upstream 91579 27887303 ~ 27888964 (-)
G593987 NA non-coding upstream 98571 27894295 ~ 27894508 (-)
G593988 NA non-coding upstream 99744 27895468 ~ 27895771 (-)
G592298 NA other downstream 302163 27482957 ~ 27483780 (-)
G591808 NA other downstream 619475 27166175 ~ 27166468 (-)
LOC110527590 LOC106575121 other downstream 1200436 26575613 ~ 26585525 (-)
G590443 NA other downstream 1627638 26157993 ~ 26158305 (-)
G589705 NA other downstream 2240525 25544735 ~ 25545418 (-)
G594636 LOC106593246 other upstream 1228683 29024407 ~ 29026049 (-)
G594762 NA other upstream 1621131 29416855 ~ 29495130 (-)
G594900 NA other upstream 1772477 29568201 ~ 29593462 (-)
G594905 NA other upstream 1794269 29589993 ~ 29625899 (-)
G594906 NA other upstream 1803907 29599631 ~ 29612736 (-)

Expression


Co-expression Network