LOC100653476 (LOC106575134)


Basic Information

Item Value
gene id LOC100653476
gene name LOC106575134
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 28145536 ~ 28168201 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983103.1
ACTACATTTTGTTAGGTATGTTAGGACATCCTCCTCATACCGCACTATTACCATGTATCCGAAGATGGAGCAGCAGGGGAGGAAAGCCCCCACAGATGTTTGAGCAAGATAACATTCGGTTAATTTTGATCTTTGGAACGCTGCTACATTTATCAAAAATGACTACATACGGGCTAGGCTTACACAGCATAGGGCTAAACATGTTGTTTTGCTTTCTCTTACGTCATGCCGATTTGTACAATTTAGACATACCGCACGCTATTCCACTCAGTGGTCCGAATGGAACATTTTTTGGATATTCTGTGTTGCTACACAAGCATCAGCAACAGACATGGGTAATAGTTGGCGCACCAGTTGCAAATTCAAGGTTCAACCAGGCTGTCAGGAATCCTGGAGCAATCTACAAGTGCAAAATTACAGACAAGAAGGACTGTGAACAGATTCAACTCGGTGTAATGCTTGACATGCCCTGTGGCAGACACTGTTCTGCTGAGGTTGAAAACCAGTGGCTTGGTGTGAGCCTCTCCAGGCGGCAGCAGGATGGACTTGTGTTgGCCTGTGGACATCGTTGGAAAAATGTCTACTTCACCAAAAAAGAAGATCTAAATAAGTTGCCACATGGCGTATGCTACAAATTGGAGTCTGACTTGAATCAATCAAGTCCTTTGATTCCATGCTACAGAGatcACGAAAATAAGTTTGGCAATGACTTTGCGTCATGTCAAGCAGGGATTTCAAATGTCCTTATTGGGGACCTCATAGTAATGGGAGCCCCTGGAACCTTGTATTGGACTGGGTCTGTTTTTGTCCACAACATATCCAGTCAGGTCACTTCTGCCTACTTGGATGATAACGTTGTCCTCTATGGAAGTTATTTGGGGTACTCAGTCAGCGCTGGCCACTTCCTGCACCCAAACTCCACTGAGGTAGTGGGTGGAGCCCCCCAGTACGGACAGACTGGAAGAGCCTACATCTTTAGCATAGAGTCCAGCACACTGAGCATCATCTCTGAGGTTAAAGGTCAAAAGCTGGGTTCCTATTTTGGGGCCACTGTGTGTGCGGTGGACCTGAACACTGATGGCCTGTCTGACCTGCTGGTGGGAGCTCCAATGTTCAGCGCTGTGAGGGAGGAGGGCCGTGTGTACATCTACATGAACCAGGGACAGGCTAACATGAAGGAGATGGAGTTTACATTAGCAGGGAGAGATTCATATGCTGCCCGGTTTGGGGAAAGTATCACAAGTCTTGGAGATATTGATGATGATGGCTATCCAGATGTTGCAGTTGGGGCACCACAAGAGGATGACCTACATGGTGCTATTTATATCTACAATGGGAGGAAGACGGGACTTGAACAATACTTTTCTCAAAGGATTGCTGGGTCTGCCTTGGGTAATGCTTTCAAGATGTTTGGCCAGTCTGTGTCTGGGGGCATTGATGTTGATGGAAACGGTTACCCAGATGTGGCCGTAGGAGCCTTTCTGTCCGactctgctgttgttctgagGACACGGGCGGTTGTTGTGGTGGAGGCGACGATACTTCTTCCTCCTAGTGTGAACCGCACCCATGCCCTGTGTACAGAGAACGGCCAGCCTGCCGTTTGCCTCAAAACCTCTGTGTGCTTCCAGTTGCACGCGAAACGTGTCTCTGGGCTCATCGAAATACTGTACAACCTGACGGCTGATGTCAAGCACATAGAGGGGCTCCAGTCCAGATTCTTCTTCAACACCAACGGCACAGAGTTATCAAATGCCACAGCAGGCAGCATCAAGACCAGGCATGGCCACATGACCTGTGTTACCCACCTGGCCTTTCTGAGGagagacattcgGGACATCTTCACCCCCATCCACTTTGAGCTGCAGTATGAGCTGGGAGAGCACAATGTGGTGAGGGGTAACTACAAGAGCTTTCCCCCTCTCAGGCCTATGCTCCAGAGGGGAGAGGAGTCCAGCAACTTGCTGACCAACAAGACTGTATTCACCAGGTACTGTGCCTGGGCCAACTGTTCCACCAATCTGCAAGTGTCTGCACAGCTGCTGTTACCGAGGACACATAGAGACATGCCATACGTTGCCCTGGGGGAGGGGAAGACCATTCTACTGAATGTTACGCTGTCCAATGCTGGCGACGCTGCCTTCCTCCCCATGCTTCACCTGAGATACCCCAGCAATCTCTACTTCATCAAAGTGTTGGACGCTGAGGAGAAATACGTGAGCTGTAAAATTGCTGAGGAAGAGAAGACAAGTGTCGGGCTAGATTGCAGCGTGggaaatttgtttttcaacacctTAGCCAAAGTTAATATCAGCTTTCTGCTGGATGTCAGTGCTGACAGTGAACCTGGTGACCTGAACATTATAATCAATGCAACCCGggAGAATTTAGAAAATGAAGATCTTCTCCATGACAATATTGTTAATCTGACTCTGCTATTGAGATATGGAGTGAATCTAAACATCCACGGTTTTGTATCCCGAACAGAGTTTGTGTTTGGGGACTTTGAGGAGCCACACTGCTCCGCTGAGAGGTTCAAATACACTTTCAAGGTTGTCAATGTTGGTCCAAGCATATCTCACGGCACAAGAGTGGAAATTGATATCCCCAAAGCTTTAGCACCGTATCCATACAGACTGCTCAACATTTTGGACATACAGTCATCTTCTGGGTGGTGTTACATTCGAAACTCCACTGATGGGACCAGCAGTACACATGGCAACATGTATGGAAGCCAGAGAGCCAGTACCATTGACAGTGTTTGGTTAAATGTGACAACTACCACTGACAGCTATTGGACGAATAGGTCCAGCACCACACACCCTTATTGGACTAATATTTCCAGTACCACTGACACCAATTGGACTAGTATATCATATTGGGCCAATGTGAGAAACTGGACCACTGTTATTGAGGATGAGTGTGATCTGCCTGACTCCAATCCCTTGAATGAattattcttcttcttctcgAAAAGCAGTAGAAGACATATGAGCTGGGCCATTGATGAGCAAAACTATGAACAATTGTAAGGACATTGTCTTTTTGTCCAGTATTGCATGAAAGAGGATGCTCTGTGTCTGTACGCGGTGTGTGAGCTTGGAGACATGGACATTGGGAAAGATGTCACCATTGAAATGGAGGTCGAAATGAATTCGGGAGTTTTAGACATCT
>XM_021608991.2
CATTTTGTTAGGTATGTTAGGACATCCTCCTCATACCGCACTATTACCATGTATCCGAAGATGGAGCAGCAGGGGAGGAAAGCCCCCACAGATGTTTGAGCAAGATAACATTCGGTTAATTTTGATCTTTGGAACGCTGCTACATTTATCAAAAATGACTACATACGGGCTAGGCTTACACAGCATAGGGCTAAACATGTTGTTTTGCTTTCTCTTACGTCATGCCGATTTGTACAATTTAGACATACCGCACGCTATTCCACTCAGTGGTCCGAATGGAACATTTTTTGGATATTCTGTGTTGCTACACAAGCATCAGCAACAGACATGGGTAATAGTTGGCGCACCAGTTGCAAATTCAAGGTTCAACCAGGCTGTCAGGAATCCTGGAGCAATCTACAAGTGCAAAATTACAGACAAGAAGGACTGTGAACAGATTCAACTCGGTGTAATGCTTGACATGCCCTGTGGCAGACACTGTTCTGCTGAGGTTGAAAACCAGTGGCTTGGTGTGAGCCTCTCCAGGCGGCAGCAGGATGGACTTGTGTTgGCCTGTGGACATCGTTGGAAAAATGTCTACTTCACCAAAAAAGAAGATCTAAATAAGTTGCCACATGGCGTATGCTACAAATTGGAGTCTGACTTGAATCAATCAAGTCCTTTGATTCCATGCTACAGAGatcACGAAAATAAGTTTGGCAATGACTTTGCGTCATGTCAAGCAGGGATTTCAAATGTCCTTATTGGGGACCTCATAGTAATGGGAGCCCCTGGAACCTTGTATTGGACTGGGTCTGTTTTTGTCCACAACATATCCAGTCAGGTCACTTCTGCCTACTTGGATGATAACGTTGTCCTCTATGGAAGTTATTTGGGGTACTCAGTCAGCGCTGGCCACTTCCTGCACCCAAACTCCACTGAGGTAGTGGGTGGAGCCCCCCAGTACGGACAGACTGGAAGAGCCTACATCTTTAGCATAGAGTCCAGCACACTGAGCATCATCTCTGAGGTTAAAGGTCAAAAGCTGGGTTCCTATTTTGGGGCCACTGTGTGTGCGGTGGACCTGAACACTGATGGCCTGTCTGACCTGCTGGTGGGAGCTCCAATGTTCAGCGCTGTGAGGGAGGAGGGCCGTGTGTACATCTACATGAACCAGGGACAGGCTAACATGAAGGAGATGGAGTTTACATTAGCAGGGAGAGATTCATATGCTGCCCGGTTTGGGGAAAGTATCACAAGTCTTGGAGATATTGATGATGATGGCTATCCAGATGTTGCAGTTGGGGCACCACAAGAGGATGACCTACATGGTGCTATTTATATCTACAATGGGAGGAAGACGGGACTTGAACAATACTTTTCTCAAAGGATTGCTGGGTCTGCCTTGGGTAATGCTTTCAAGATGTTTGGCCAGTCTGTGTCTGGGGGCATTGATGTTGATGGAAACGGTTACCCAGATGTGGCCGTAGGAGCCTTTCTGTCCGactctgctgttgttctgagGACACGGGCGGTTGTTGTGGTGGAGGCGACGATACTTCTTCCTCCTAGTGTGAACCGCACCCATGCCCTGTGTACAGAGAACGGCCAGCCTGCCGTTTGCCTCAAAACCTCTGTGTGCTTCCAGTTGCACGCGAAACGTGTCTCTGGGCTCATCGAAATACTGTACAACCTGACGGCTGATGTCAAGCACATAGAGGGGCTCCAGTCCAGATTCTTCTTCAACACCAACGGCACAGAGTTATCAAATGCCACAGCAGGCAGCATCAAGACCAGGCATGGCCACATGACCTGTGTTACCCACCTGGCCTTTCTGAGGagagacattcgGGACATCTTCACCCCCATCCACTTTGAGCTGCAGTATGAGCTGGGAGAGCACAATGTGGTGAGGGGTAACTACAAGAGCTTTCCCCCTCTCAGGCCTATGCTCCAGAGGGGAGAGGAGTCCAGCAACTTGCTGACCAACAAGACTGTATTCACCAGGTACTGTGCCTGGGCCAACTGTTCCACCAATCTGCAAGTGTCTGCACAGCTGCTGTTACCGAGGACACATAGAGACATGCCATACGTTGCCCTGGGGGAGGGGAAGACCATTCTACTGAATGTTACGCTGTCCAATGCTGGCGACGCTGCCTTCCTCCCCATGCTTCACCTGAGATACCCCAGCAATCTCTACTTCATCAAAGTGTTGGACGCTGAGGAGAAATACGTGAGCTGTAAAATTGCTGAGGAAGAGAAGACAAGTGTCGGGCTAGATTGCAGCGTGggaaatttgtttttcaacacctTAGCCAAAGTTAATATCAGCTTTCTGCTGGATGTCAGTGCTGACAGTGAACCTGGTGACCTGAACATTATAATCAATGCAACCCGggAGAATTTAGAAAATGAAGATCTTCTCCATGACAATATTGTTAATCTGACTCTGCTATTGAGATATGGAGTGAATCTAAACATCCACGGTTTTGTATCCCGAACAGAGTTTGTGTTTGGGGACTTTGAGGAGCCACACTGCTCCGCTGAGAGGTTCAAATACACTTTCAAGGTTGTCAATGTTGGTCCAAGCATATCTCACGGCACAAGAGTGGAAATTGATATCCCCAAAGCTTTAGCACCGTATCCATACAGACTGCTCAACATTTTGGACATACAGTCATCTTCTGGGTGGTGTTACATTCGAAACTCCACTGATGGGACCAGCAGTACACATGGCAACATGTATGGAAGCCAGAGAGCCAGTACCATTGACAGTGTTTGGTTAAATGTGACAACTACCACTGACAGCTATTGGACGAATAGGTCCAGCACCACACACCCTTATTGGACTAATATTTCCAGTACCACTGACACCAATTGGACTAGTATATCATATTGGGCCAATGTGAGAAACTGGACCACTGTTATTGAGGATGAGTGTGATCTGCCTGACTCCAATCCCTTGAATGAattattcttcttcttctcgAAAAGCAGTAGAAGACATATGTATTGCATGAAAGAGGATGCTCTGTGTCTGTACGCGGTGTGTGAGCTTGGAGACATGGACATTGGGAAAGATGTCACCATTGAAATGGAGGTCGAAATGAATTCGGGAGTTTTAGACATCTCACCGGGAAGACATAGTGTCATGCTGTTAGAGACCACTGCTGTCATATCACCCAAGAAGGACCCATTTATTTGGTTCTTAAAAGAAGACCCCATCACAGTGGTTGTCCTGGAGGCCCATCATAGCCACAAACTGAAACCAGTCATTGAGCTGTCCATCATCGTGGCCAGTCTCTTACTAGGCCTCTTCATCCTTGCCTTGCTGGTCATCTGCATGTGGAAGAGTGGCTTCTTTAAGCGTAAGTATGAGGACAAGATGGAGAATATACAAAGGCTCAGCTGGGACTACTGAGGACGGACATTGATTCATATCAAATACATGACACAATATCATAGCTAAATGGGAAATTCAGTACAACAtaatgttagatggttcctcaacCTGAAAGTAGTCTAATCATCTAAAATGAATTATATTTTCTGACACCCTGTAGTCACATTTTGAAACCAgtagactaactagctagctagctagctatgtaaacCACACCCTTCTGCGAACACGCCTTCTGCAATGATGGCTACAAGGGAGTACAtatttaaattaggtaagagTATAAGATATTACCATTGGTGTATAAAAATGACCGGCTTTATGTGGTGTCACACAAAGCCTTAGCTTTTGGATGAAGCCAGTAACCTTATGGTCAAACGTTATTGATGTACCAGCCACAGTAATTTTTCAGTCTTTAGTCATCGTACTATgatctggtttcatccaaatatcgTCCGATCtgatgaaaaacatgattttgactgtttGTGACCTTTAAGTTTTAAAATattgaacttcccctttaatcaGTGACTGAAGATTGATTGACCCACTGTACAGTGTCtcgcaaaagtattcaccccccttggcgttgTTACTATTTTGTGCCATTACATCCTGTAATttcaattgatttttatttggatttcatgtaatggacatacacaaagtagtccaaaattggtgaagtgacattttttaaattacttgtttcaaaaaaacatttatttttttaaa

Function

NR:

description
integrin alpha-4-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983103.1 False 3174 mRNA 0.47 25 28145536 28165219
XM_021608991.2 True 4120 mRNA 0.45 28 28145540 28168201

Neighbor

gene id symbol gene type direction distance location
plekha3 LOC106575131 coding upstream 271015 27854006 ~ 27874521 (+)
LOC110527593 LOC106575124 coding upstream 590781 27505909 ~ 27555139 (+)
LOC110527592 LOC106575150 coding upstream 662956 27458694 ~ 27482580 (+)
LOC118965273 NA coding upstream 1550385 26585519 ~ 26595151 (+)
n6amt1 n6amt1 coding upstream 1601852 26535783 ~ 26543684 (+)
LOC118965275 LOC106575153 coding downstream 53424 28221625 ~ 28258442 (+)
LOC110527602 LOC105007064 coding downstream 138066 28306267 ~ 28368030 (+)
mtx2 mtx2 coding downstream 498215 28666416 ~ 28686793 (+)
LOC110527611 rbm45 coding downstream 586275 28754476 ~ 28780185 (+)
LOC110527622 LOC106564406 coding downstream 744439 28912640 ~ 28921397 (+)
G592684 NA non-coding upstream 7174 28022903 ~ 28138362 (+)
G592746 NA non-coding upstream 21854 28120990 ~ 28123682 (+)
G592621 NA non-coding upstream 196155 27949103 ~ 27949381 (+)
G592606 NA non-coding upstream 223084 27922219 ~ 27922452 (+)
G592601 NA non-coding upstream 228545 27916766 ~ 27916991 (+)
G592699 NA non-coding downstream 1345 28169546 ~ 28172955 (+)
G592990 NA non-coding downstream 386529 28554730 ~ 28555209 (+)
G592993 NA non-coding downstream 390484 28558685 ~ 28559022 (+)
G593005 NA non-coding downstream 398629 28566830 ~ 28567405 (+)
G593006 NA non-coding downstream 399897 28568098 ~ 28578328 (+)
G592445 lig4 other upstream 438242 27703583 ~ 27707294 (+)
G592134 NA other upstream 661740 27483050 ~ 27483796 (+)
G590949 LOC106575121 other upstream 1567603 26577407 ~ 26577933 (+)
G590936 gart other upstream 1591994 26552554 ~ 26553542 (+)
G593144 NA other downstream 667008 28835209 ~ 28841083 (+)
G593171 NA other downstream 723962 28892163 ~ 28892425 (+)
G593283 NA other downstream 891497 29059698 ~ 29064592 (+)
LOC110527619 LOC106578599 other downstream 1161471 29329584 ~ 29503787 (+)
G593513 LOC106610831 other downstream 1359826 29528027 ~ 29528910 (+)

Expression


Co-expression Network