LOC118965275 (LOC106575153)


Basic Information

Item Value
gene id LOC118965275
gene name LOC106575153
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 28221625 ~ 28258442 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983104.1
CTACacagcccccctccctctctcactctgtcagcaatcccctcctctctttctccctctccatctcccttgtgctctctctgtctgtctggtgtgttagCAGTATGGAGCCCAACAGTCCTAAGAAGATCCAGTTTGCTGTGCCTCCCTTTCAGAGCCAGTTGGACCCTCAGGCAGCTGAACATATTCGTAGGAGAAGACCCACCCCTGCGACGCTGGTCATCTACCAAGAGCCATCTGGGGCAGAAGCAGAAGAGAAGCGGACAACAAGCAGCAGTATGGAAGATCTCCAGGGTGCAGATTTGTCCCCAGCACAGAGGAAGCAGAGCGCCTTCATTCCGCCAACTGTGAAAGAGCTACAGATGGTGATGGACCAAAACTTTCAGAAACCGGAACATCTAGAAGAGGGCCTCTGTGAAAACACTGACCAGCTCAGCCCAATCACAGCCCAGCACTATGGCAATACTGCCCAACAGGCTAATCATAACGGGTCTGATGAGCCAAATGGCAATGAGCTGTATGCCAATCACCGCCTGCTAGCCAATGGGGGCCTCCCAGTCGCAGACAGCAACTGTACTGGGGAGACTTCTACAAGTCAGCAGGGCAATCTCTCCAGTCCCACGTCTATCTCTCGATAACGTCACTCTGTTTTGTCTTTCTGTCTATTGCTTGttcctgggttgtgttcattagggcataaAACATAGTGAAACGTTTTGCAATGGCAAACGACAAGTTGACATAGTACCTCTACATCTCTTTAAGCTTCAAAAGTTTTACTCTGTTTTGTGCCTACTGAACAAAACCCTGGTCCTCTGTTTCCTCTTCTAATTATACAATGGTTGTTATCCCTGGAAGTTATGTTTCCATAAACTATACAGCTCCAGCTCTCCTGATGTACGAAGTGTCTCAGAAGTGTATGATTTGATTATTTTCATTGCTTATCCAACTGGATGTTACATCATTTATGTAATTAGTGAGGTCTAAGACATCATTCAAATGACATTTTTGTTCAGAACTCTTTCTGGTTTGTTTGTTAGTTTTTAGTCAATTTATACTGTAGTTGGTCTCTTGGTATTAATATGTTGGTATGTACTGTTCTTAAGATTTATCTTGCAAAAATGAATGGAACTtgttcaaataaaatgtattttatgaa

Function

NR:

description
PREDICTED: protein phosphatase 1 regulatory subunit 1C-like

GO: NA

KEGG:

id description
K17549 PPP1R1C; protein phosphatase 1 regulatory subunit 1C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983104.1 True 1159 mRNA 0.45 6 28221625 28258442

Neighbor

gene id symbol gene type direction distance location
LOC100653476 LOC106575134 coding upstream 53424 28145536 ~ 28168201 (+)
plekha3 LOC106575131 coding upstream 347104 27854006 ~ 27874521 (+)
LOC110527593 LOC106575124 coding upstream 666870 27505909 ~ 27555139 (+)
LOC110527592 LOC106575150 coding upstream 739045 27458694 ~ 27482580 (+)
LOC118965273 NA coding upstream 1626474 26585519 ~ 26595151 (+)
LOC110527602 LOC105007064 coding downstream 47825 28306267 ~ 28368030 (+)
mtx2 mtx2 coding downstream 407974 28666416 ~ 28686793 (+)
LOC110527611 rbm45 coding downstream 496034 28754476 ~ 28780185 (+)
LOC110527622 LOC106564406 coding downstream 654198 28912640 ~ 28921397 (+)
LOC118965279 LOC106595049 coding downstream 717041 28975483 ~ 28977613 (+)
G592699 NA non-coding upstream 48670 28169546 ~ 28172955 (+)
G592684 NA non-coding upstream 83263 28022903 ~ 28138362 (+)
G592746 NA non-coding upstream 97943 28120990 ~ 28123682 (+)
G592621 NA non-coding upstream 272244 27949103 ~ 27949381 (+)
G592606 NA non-coding upstream 299173 27922219 ~ 27922452 (+)
G592990 NA non-coding downstream 296288 28554730 ~ 28555209 (+)
G592993 NA non-coding downstream 300243 28558685 ~ 28559022 (+)
G593005 NA non-coding downstream 308388 28566830 ~ 28567405 (+)
G593006 NA non-coding downstream 309656 28568098 ~ 28578328 (+)
G593007 NA non-coding downstream 315496 28573938 ~ 28582766 (+)
G592445 lig4 other upstream 514331 27703583 ~ 27707294 (+)
G592134 NA other upstream 737829 27483050 ~ 27483796 (+)
G590949 LOC106575121 other upstream 1643692 26577407 ~ 26577933 (+)
G590936 gart other upstream 1668083 26552554 ~ 26553542 (+)
G593144 NA other downstream 576767 28835209 ~ 28841083 (+)
G593171 NA other downstream 633721 28892163 ~ 28892425 (+)
G593283 NA other downstream 801256 29059698 ~ 29064592 (+)
LOC110527619 LOC106578599 other downstream 1071230 29329584 ~ 29503787 (+)
G593513 LOC106610831 other downstream 1269585 29528027 ~ 29528910 (+)

Expression


Co-expression Network