LOC110527602 (LOC105007064)


Basic Information

Item Value
gene id LOC110527602
gene name LOC105007064
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 28306267 ~ 28368030 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608995.2
CGCTAGCTATCGGGCTACCCCCTGTCACAATGATACAAATGGGAAATATGAACGGAATTGTGTCACGTGAACAGAGTCGTGTTGCAGGGAGCAGCCTCGTTCTGAGCGGGGGCAACACCTAGGTAGCGAGAAAGGAAAAACAGGGAGACCGTGGGGTGGGTTTGTTAGccttgatgttttccttaaatgGACGAATTGTAACACTATAACACGATTTTTATTACAGCAAGCATTTATTCTATACCAACACTGTACTGCGAAGATACAGGACACATTTTGGTTTGAGGAACACCTTGAACAAGTAAAATGTCACGGGGGGCATTGCAGCCGAGCCAGCAAAAGCTGGCAGAGAAATTTACCATCCTTAACGACAGGGGAATCGGGATGCTCACCCGGATCTATAACATCAAAAAGGCATGCGGCGACCCCAAAGCAAAGCCGTCATACCTGGTGGACAAAAACTTGGAGTCGGTGGTTAAGTTTATCGTACGAAAATTCCCTGCAATAGAGACGCGAAACAATAATCAACAGCTTACACAGCTTCAAAAAGAAAAGTCTGAAATACTAAAGAATCTATCTCTATATTACTTCACATTTGTGGATGTCATGGAATTCAAGGACAATGTTTCTGAATTACTGAACACTATTGACGCTTGCCAAGTTTTCTTTGATGTTACGGTTAACTTTGATCTCACCAAGAACTACCTTGACTTAGTTGTCACCTACACTACATTAATGATGCTACTGTCCCGTATTGAAGAGCGGAAAGCAATCATTGGACTCTACAACTACGCCCATGAAATGACACACGGGGCCAGTGACAGGGAATACCCAAGGCTGGGCCAAATGATCGTGGACTATGAGAATCCTCTGAAAAAGATGATGGAAGAGTTTGTCCCTCATGGGAAGTCTTTGTCAGACGCACTCATCTCGCTGCAGATGGTCTACCCCAGGAGGAACCTGTCCGCTGACCAGTGGAGGAACGCCCAGCTTCTGAGCCTGATTAGCGCCCCCAGTACCATGCTCAACCCGGcccagtcagacacaATGCCCTGTGAATACCTCTCCTTAGACTGTATGGAGAAATGGATTGTGTTCGGGTTCGTCCTGTGCCACGCGGTGCTGAATACTGACCCAGCAGCGCTGAGCCTGTGGAAGCTGGCCCTCCAGAGCAGCACCTGCCTCTGTCTCTTCAGGGATGAGGTCTTTCACATCCACAAGGCCTGTGAGGACCTGTTCGTCAACATCCGTGGctacaataaacgTCTAAATGACATCAAAGAATGCAAAGAACAAGCGCTATCGCAAGCTGGGACCATGCATAGAGAAAGGCGCAAGTTTCTTAGGTCTGCCCTGAAAGAGTTGGCCACAGTTCTGTCTGACCAGCCTGGACTGCTGGGCCCAAAGGCTCTGTTTGTGTTCATGGCTCTCTCTTTCGCCCGGGATGAGATCATCTGGCTCCTCCGCCATGCAGACAACATACAGAAAAAAAGCACAGATGACTTCATTGACAAGCATGTTGCAGAGCTCATCTTCTACATGGAGGAGCTCCGGGCACACATCAGGAAGTACGGTCCCGTAATGCAACGGTACTATGTGCAGTACTTGTCCGGCTTTGACGCTGTGATTCTCAATGAGCTTGTGCAGAacctctctgtctgccctgaGGATGAGTCCATCATCATGTCCTCCTTTGTGAACACCATGACCTCCCTCAGCGTGAAGCAAGTGGAGGACGGAGACATGTTTGATTTCCGGGGCATGAGGCTTGACTGGTTCCGTCTGCAGgccTACACTAGTGTGTCAAAAGCCTCTCTGGGCATCGCTGACCACCGTGAACTGGGCAAGATGATGAACACCATCATATTCCACACCAAGATGGTGGACTCCCTGGTGGAGATGTTAGTGGAAACCTCAGACATCTCCATCTTCTGCTTCTACAGCCGAGCATTTGAGAAGATGTTTCAGCAGTGTTTGGAACTGCCCTCACAGTCGCGCCACTCCATCTCATTCCCCCTGCTGTGCACACACTTCATGAGCTGCACCCATGAGCTCTGTCCCGAAGAGCGGCATCACATTGGCGACCGCAGTCTCTCGCTCTGCAACATGTTCCTGGACGAGATGGCCAAGCAGGCGCGCAACCTCATCACCGACATCTGCACAGAGCAGTGCACGCTCAGTGACCAGCTGCTTCCTAAACACTGTGCGAAAACCATCAGTCAGGCAGTGAACAAGAAGTCCAAAAAGCTGACTGGGAAGAAAGGCGAGCCGGAGCGAGAGAAGCCGGGTGTTGAGAGCATGAGGAAGAACAGGCTCCTGGTCACCAACCTGGACAAGCTGCACACGGCGCTGTCAGAGTTGTGCTTCTCCATTAACTACGTGCCCAACATGGTGGTGTGGGAACACACCTTTACCCCCCGCGAATACCTCACCTCCCACCTGGAGATCCGCTTCACCAAGTCCATCGTGGGGATGACCATGTACAACCAGGCCACGCAAGAGATCGCCAAGCCCTCCGAGCTACTCACCAGCGTGCGTTCCTACATGACGGTGCTGCAGTCCATCGAGAACTATGTGCAGATTGACATCACGCGGGTGTTCAACAACGTGCTGCTCCAGCAGACCCAGCACCTGGACAGCCATGGGGAGCCCACCATCACCAGCCTCTACACCAACTGGTATCTGGAGACCTTGCTCCGGCAGGTAAGTAACGGCCACATTGCCTACTTCCCTGCCATGAAGGCCTTTGTCAACCTGCCTACGGAGAACGAACTCACCTTTAATGCTGAGGAGTACTCCGATATATCCGAGATGAGGTCACTCTCAGAGCTGCTGGGACCCTATGGCATGAAGTTCCTCAGCGAGAGCCTCATGTGGCACATATCCTCCCAGGTGGCAGAACTCAAGAAACTGGTGGTGGACAACGTGGAAGTTCTGAACCAGATGAGGACCAGCTTTGATAAGCCAGAGCAGATGGCTGCCCTCTTTAAAAAGCTCTCATCTGTTGACAGCGTCCTGAAAAGGATGACCATTATTGGAGTCATCTTGTCATTCCGATCACTGGCCCAGGAAGCACTCCGCGACGTGCTGTCCTTCCACATTCCTTTCCTGGTGAGCTCCGTCGAGGATTTCAAGGACCACATTCCCAGAGAGACTGACATGAAGGTGGCCATGAATGTGTATGAGCTGTCGTCTGCAGCAGGCCTGCCGTGTGAGATAGACCCAGCCTTAGTGGTGGCCCTTTCTTCACAGAAATCAGAAAACATAAGTCCAGAGGAGGAGTATAAGATCGCCTGTCTGCTCATGGTCTTCGTTGCCGTTTCCATGCCAACTCTGGCCAGCAACGTCATGTCTCAATATAGCCCTGCAATCGAAGGACACTGCAACAATATTCACTGTCTGGCGAAAGCTGTCAACCAGATAGCTGCTGCCTTGTTCACCATTCACAAGGGAAGCATTGAAGATCGTCTCAAAGAATTTCTGGCTCTGGCATCTTCCAGCTTGCTGAAGATTGGCCAGGAGACGGACAAAATGACAACACGAAACAGGGAGTCTGTGTACCTGCTGCTGGACATGATTGTCCAGGAGTCTCCATTCCTTACCATGGACCTCCTGGAGTCATGCTTCCCCTACGTGCTACTGAGAAACGCTTACCACGCCGTCTACAAGCAGAGCATCAGCTCATCTGCATAAGTCTCCTCTTCAGAACATAAGTCCCTCACATGGGACATCAAGTGGACCACAGGAGCCTTGCTAACATAAACTGCCGTGTGCTCATTTCACTTTGTCTTAAAACTACACTATGAAATTGTGGGATACATTTTTTTCTCCTCGTGAAATTGCATTAATGATCTGCCGTTTCCTAAAAGGGTCATACAGTAGTAACCTATGAGTTTTgcttgataaaaaaataaaaaagatttaCACTACTAAATTCAATTTTTTTATGAAAAGCATCAGTTTTTCAACATGAGAACAATGTGTAATGGAAAAATAACAATCTCTGATGTTTGGGGGCTGAATTTTAAATATCTTTATTATTAATAATGCAAACATGTTGCCTGTTTATTGACCGGAGCATTAATGATTTTATTTAGGTGGTTCTAGATTTTTATGGGTTattctgtgtgttttttttacagtttGGTTTTTATATTTGCCATATTATTGACACAAATGCGTCTGATTTGGTTTGATACTCAAAATTGTTGCCGGTAGCTATATAATAAGATGAACAGATGGTGTTTGTACAAAGCATAGTATAATTTTTTTACTAACTCATGATGCCTCAGTGTCATTAACTCACCATTGTACCTGCCCATATGGTATAAAAATTATTGCATATTTATGGAATGTTTATAAATTGTTCTACCTTAACCACTATGTTTTACATTTTTGAAAATTACACTAACTTCCATAACATAAATAAACAATAGGTTATATCAAACTGC
>XM_036983105.1
CGCTAGCTATCGGGCTACCCCCTGTCACAATGATACAAATGGGAAATATGAACGGAATTGTGTCACGTGAACAGAGTCGTGTTGCAGGGAGCAGCCTCGTTCTGAGCGGGGGCAACACCTAGGTAGCGAGAAAGGAAAAACAGGGAGACCGTGGGGTGGGTTTGTTAGccttgatgttttccttaaatgGACGAATTGTAACACTATAACACGATTTTTATTACAGCAAGCATTTATTCTATACCAACACTGTACTGCGAAGATACAGGACACATTTTGGTTTGAGGAACACCTTGAACAAGTAAAATGTCACGGGGGGCATTGCAGCCGAGCCAGCAAAAGCTGGCAGAGAAATTTACCATCCTTAACGACAGGGGAATCGGGATGCTCACCCGGATCTATAACATCAAAAAGGCATGCGGCGACCCCAAAGCAAAGCCGTCATACCTGGTGGACAAAAACTTGGAGTCGGTGGTTAAGTTTATCGTACGAAAATTCCCTGCAATAGAGACGCGAAACAATAATCAACAGCTTACACAGCTTCAAAAAGAAAAGTCTGAAATACTAAAGAATCTATCTCTATATTACTTCACATTTGTGGATGTCATGGAATTCAAGGACAATGTTTCTGAATTACTGAACACTATTGACGCTTGCCAAGTTTTCTTTGATGTTACGGTTAACTTTGATCTCACCAAGAACTACCTTGACTTAGTTGTCACCTACACTACATTAATGATGCTACTGTCCCGTATTGAAGAGCGGAAAGCAATCATTGGACTCTACAACTACGCCCATGAAATGACACACGGGGCCAGTGACAGGGAATACCCAAGGCTGGGCCAAATGATCGTGGACTATGAGAATCCTCTGAAAAAGATGATGGAAGAGTTTGTCCCTCATGGGAAGTCTTTGTCAGACGCACTCATCTCGCTGCAGATGGTCTACCCCAGGAGGAACCTGTCCGCTGACCAGTGGAGGAACGCCCAGCTTCTGAGCCTGATTAGCGCCCCCAGTACCATGCTCAACCCGGcccagtcagacacaATGCCCTGTGAATACCTCTCCTTAGACTGTATGGAGAAATGGATTGTGTTCGGGTTCGTCCTGTGCCACGCGGTGCTGAATACTGACCCAGCAGCGCTGAGCCTGTGGAAGCTGGCCCTCCAGAGCAGCACCTGCCTCTGTCTCTTCAGGGATGAGGTCTTTCACATCCACAAGGCCTGTGAGGACCTGTTCGTCAACATCCGTGGctacaataaacgTCTAAATGACATCAAAGAATGCAAAGAACAAGCGCTATCGCAAGCTGGGACCATGCATAGAGAAAGGCGCAAGTTTCTTAGGTCTGCCCTGAAAGAGTTGGCCACAGTTCTGTCTGACCAGCCTGGACTGCTGGGCCCAAAGGCTCTGTTTGTGTTCATGGCTCTCTCTTTCGCCCGGGATGAGATCATCTGGCTCCTCCGCCATGCAGACAACATACAGAAAAAAAGCACAGATGACTTCATTGACAAGCATGTTGCAGAGCTCATCTTCTACATGGAGGAGCTCCGGGCACACATCAGGAAGTACGGTCCCGTAATGCAACGGTACTATGTGCAGTACTTGTCCGGCTTTGACGCTGTGATTCTCAATGAGCTTGTGCAGAacctctctgtctgccctgaGGATGAGTCCATCATCATGTCCTCCTTTGTGAACACCATGACCTCCCTCAGCGTGAAGCAAGTGGAGGACGGAGACATGTTTGATTTCCGGGGCATGAGGCTTGACTGGTTCCGTCTGCAGgccTACACTAGTGTGTCAAAAGCCTCTCTGGGCATCGCTGACCACCGTGAACTGGGCAAGATGATGAACACCATCATATTCCACACCAAGATGGTGGACTCCCTGGTGGAGATGTTAGTGGAAACCTCAGACATCTCCATCTTCTGCTTCTACAGCCGAGCATTTGAGAAGATGTTTCAGCAGTGTTTGGAACTGCCCTCACAGTCGCGCCACTCCATCTCATTCCCCCTGCTGTGCACACACTTCATGAGCTGCACCCATGAGCTCTGTCCCGAAGAGCATCACATTGGCGACCGCAGTCTCTCGCTCTGCAACATGTTCCTGGACGAGATGGCCAAGCAGGCGCGCAACCTCATCACCGACATCTGCACAGAGCAGTGCACGCTCAGTGACCAGCTGCTTCCTAAACACTGTGCGAAAACCATCAGTCAGGCAGTGAACAAGAAGTCCAAAAAGCTGACTGGGAAGAAAGGCGAGCCGGAGCGAGAGAAGCCGGGTGTTGAGAGCATGAGGAAGAACAGGCTCCTGGTCACCAACCTGGACAAGCTGCACACGGCGCTGTCAGAGTTGTGCTTCTCCATTAACTACGTGCCCAACATGGTGGTGTGGGAACACACCTTTACCCCCCGCGAATACCTCACCTCCCACCTGGAGATCCGCTTCACCAAGTCCATCGTGGGGATGACCATGTACAACCAGGCCACGCAAGAGATCGCCAAGCCCTCCGAGCTACTCACCAGCGTGCGTTCCTACATGACGGTGCTGCAGTCCATCGAGAACTATGTGCAGATTGACATCACGCGGGTGTTCAACAACGTGCTGCTCCAGCAGACCCAGCACCTGGACAGCCATGGGGAGCCCACCATCACCAGCCTCTACACCAACTGGTATCTGGAGACCTTGCTCCGGCAGGTAAGTAACGGCCACATTGCCTACTTCCCTGCCATGAAGGCCTTTGTCAACCTGCCTACGGAGAACGAACTCACCTTTAATGCTGAGGAGTACTCCGATATATCCGAGATGAGGTCACTCTCAGAGCTGCTGGGACCCTATGGCATGAAGTTCCTCAGCGAGAGCCTCATGTGGCACATATCCTCCCAGGTGGCAGAACTCAAGAAACTGGTGGTGGACAACGTGGAAGTTCTGAACCAGATGAGGACCAGCTTTGATAAGCCAGAGCAGATGGCTGCCCTCTTTAAAAAGCTCTCATCTGTTGACAGCGTCCTGAAAAGGATGACCATTATTGGAGTCATCTTGTCATTCCGATCACTGGCCCAGGAAGCACTCCGCGACGTGCTGTCCTTCCACATTCCTTTCCTGGTGAGCTCCGTCGAGGATTTCAAGGACCACATTCCCAGAGAGACTGACATGAAGGTGGCCATGAATGTGTATGAGCTGTCGTCTGCAGCAGGCCTGCCGTGTGAGATAGACCCAGCCTTAGTGGTGGCCCTTTCTTCACAGAAATCAGAAAACATAAGTCCAGAGGAGGAGTATAAGATCGCCTGTCTGCTCATGGTCTTCGTTGCCGTTTCCATGCCAACTCTGGCCAGCAACGTCATGTCTCAATATAGCCCTGCAATCGAAGGACACTGCAACAATATTCACTGTCTGGCGAAAGCTGTCAACCAGATAGCTGCTGCCTTGTTCACCATTCACAAGGGAAGCATTGAAGATCGTCTCAAAGAATTTCTGGCTCTGGCATCTTCCAGCTTGCTGAAGATTGGCCAGGAGACGGACAAAATGACAACACGAAACAGGGAGTCTGTGTACCTGCTGCTGGACATGATTGTCCAGGAGTCTCCATTCCTTACCATGGACCTCCTGGAGTCATGCTTCCCCTACGTGCTACTGAGAAACGCTTACCACGCCGTCTACAAGCAGAGCATCAGCTCATCTGCATAAGTCTCCTCTTCAGAACATAAGTCCCTCACATGGGACATCAAGTGGACCACAGGAGCCTTGCTAACATAAACTGCCGTGTGCTCATTTCACTTTGTCTTAAAACTACACTATGAAATTGTGGGATACATTTTTTTCTCCTCGTGAAATTGCATTAATGATCTGCCGTTTCCTAAAAGGGTCATACAGTAGTAACCTATGAGTTTTgcttgataaaaaaataaaaaagatttaCACTACTAAATTCAATTTTTTTATGAAAAGCATCAGTTTTTCAACATGAGAACAATGTGTAATGGAAAAATAACAATCTCTGATGTTTGGGGGCTGAATTTTAAATATCTTTATTATTAATAATGCAAACATGTTGCCTGTTTATTGACCGGAGCATTAATGATTTTATTTAGGTGGTTCTAGATTTTTATGGGTTattctgtgtgttttttttacagtttGGTTTTTATATTTGCCATATTATTGACACAAATGCGTCTGATTTGGTTTGATACTCAAAATTGTTGCCGGTAGCTATATAATAAGATGAACAGATGGTGTTTGTACAAAGCATAGTATAATTTTTTTACTAACTCATGATGCCTCAGTGTCATTAACTCACCATTGTACCTGCCCATATGGTATAAAAATTATTGCATATTTATGGAATGTTTATAAATTGTTCTACCTTAACCACTATGTTTTACATTTTTGAAAATTACACTAACTTCCATAACATAAATAAACAATAGGTTATATCAAACTGC

Function

NR:

description
nck-associated protein 1-like isoform X2

GO: NA

KEGG:

id description
K05750 NCKAP1, NAP125; NCK-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608995.2 False 4451 mRNA 0.48 31 28306267 28368030
XM_036983105.1 True 4448 mRNA 0.48 31 28306267 28368030

Neighbor

gene id symbol gene type direction distance location
LOC118965275 LOC106575153 coding upstream 47825 28221625 ~ 28258442 (+)
LOC100653476 LOC106575134 coding upstream 138066 28145536 ~ 28168201 (+)
plekha3 LOC106575131 coding upstream 431746 27854006 ~ 27874521 (+)
LOC110527593 LOC106575124 coding upstream 751512 27505909 ~ 27555139 (+)
LOC110527592 LOC106575150 coding upstream 823687 27458694 ~ 27482580 (+)
mtx2 mtx2 coding downstream 298386 28666416 ~ 28686793 (+)
LOC110527611 rbm45 coding downstream 386446 28754476 ~ 28780185 (+)
LOC110527622 LOC106564406 coding downstream 544610 28912640 ~ 28921397 (+)
LOC118965279 LOC106595049 coding downstream 607453 28975483 ~ 28977613 (+)
LOC118965280 NA coding downstream 619316 28987346 ~ 28992237 (+)
G592699 NA non-coding upstream 133312 28169546 ~ 28172955 (+)
G592684 NA non-coding upstream 167905 28022903 ~ 28138362 (+)
G592746 NA non-coding upstream 182585 28120990 ~ 28123682 (+)
G592621 NA non-coding upstream 356886 27949103 ~ 27949381 (+)
G592606 NA non-coding upstream 383815 27922219 ~ 27922452 (+)
G592990 NA non-coding downstream 186700 28554730 ~ 28555209 (+)
G592993 NA non-coding downstream 190655 28558685 ~ 28559022 (+)
G593005 NA non-coding downstream 198800 28566830 ~ 28567405 (+)
G593006 NA non-coding downstream 200068 28568098 ~ 28578328 (+)
G593007 NA non-coding downstream 205908 28573938 ~ 28582766 (+)
G592445 lig4 other upstream 598973 27703583 ~ 27707294 (+)
G592134 NA other upstream 822471 27483050 ~ 27483796 (+)
G590949 LOC106575121 other upstream 1728334 26577407 ~ 26577933 (+)
G590936 gart other upstream 1752725 26552554 ~ 26553542 (+)
G593144 NA other downstream 467179 28835209 ~ 28841083 (+)
G593171 NA other downstream 524133 28892163 ~ 28892425 (+)
G593283 NA other downstream 691668 29059698 ~ 29064592 (+)
LOC110527619 LOC106578599 other downstream 961642 29329584 ~ 29503787 (+)
G593513 LOC106610831 other downstream 1159997 29528027 ~ 29528910 (+)

Expression


Co-expression Network