LOC110527622 (LOC106564406)


Basic Information

Item Value
gene id LOC110527622
gene name LOC106564406
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 28912640 ~ 28921397 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609024.2
CAGAAACAGCTCGCCAACCACCccggtagcttgctagccaacatagCTGAAAGATTCCAGCTATTTATACGCTTTCGGTGTATATTACCTACTGTGTTTTAGACACACTTCTGTCATATCTACTTGTTAAACTATTTAATATTACGTTATTTTGTATTAGTCAGCTATAGTAGttggctggttaagttagcactAGCCTAGTCACTAatgatagccagctagctaacatccctgaaCATGAGCTCCCTAAACTTCTCTCCTGTtgaagaagaggaggtctgctggacggagaaagaaactctggggctgaacattgtcgtaaaagaggagaaggaagaagaggatgtcacagttaaacaagaagtagagggtgaggctgttacagtgaaagaagaagaggaagacgtttcagtgaaagaagaggaggcagagaaagaggatgCAGTTTTTGGAGTGAAGAAGGAAggggagattactgtcacattgaaagatgaagatgaggagatgggagatctgattaacaccagagagatACCAGACTCTGACAGCAGGAAGAGTCCTTCAGGGGAACCAGACCCAGAGACGCCCAAACCAGCGAGACgacaccactgctcccactgtgaAAAAAGTTTTCGCTGGTTAGGGAATCTAAAGCaccatgagaggacacacacaggagaaaagccataCCACTGCTTCCAATGTGAAAAGAGATTTTCCGGATCAGGGGACTTAAAAGCTCATGAAAGGACACACACGGGAGAAAAGCCTTAtcactgttcccagtgtggaaagagttttactgtgttaaataacctgaaaaggcatgagagaatacacaaaGGAGAAAAGCCTTttcaatgttcccagtgtggaaagagttttaccctgTTAGCTAATCTGAaaaggcatgagagaatacacacaggagaaagtCCTTATCACTGTTCCCACTGTGGAATGAGTTTTATTCAGTTGGCGAGCCTGAAGGCACATGAGTGGACACACACAGAAGAAAAGCCTTTCCAGTGTTCCCAGTGTAGAAAGATTTTTACCCTGTTAGCTAACTTGAaaaggcatgagagaatacacacaggagaaaagccttaccatTGCTTCCATTGTGAAAAGAGATTTTCCCGATCAGGGGACCTAAAAGCTCATGagtggacacacacaggagaagaaCCTTTCCattgttcccagtgtggaaagcgttTTACCGTGTTAGCTAACCTGAaaaggcatgagagaatacacacaggagaaaagcctcaTCACTGTTCCCACTGTGGAATGAGTTTTATTCAGTCAAGGAGCCTGAAGGAGCATGagtggacacacacaggagaaaagcctttccaatgttcccagtgtggaaagagttttattgTGTTAAGTAACCTAAaaaggcatgagagaatacacacaggagaaaagccattCCAATGTTCCCATTGTGGAAACAGTTTTACTCAGAGAGGGCACCTACAagagcatgagagaatacacacaggagaaaagcctttccaatgttcccagtgtaAAAATAGATTTTCCCGAGTAGGGGACCTAAAAGctcatgagaggacacacacaggagaaaagcctttccaatgttcccagtgtaGAAAGAGTTTTACCGTGTTAGCTACCCTGAaaaggcatgagagaatacacacagaagAAAATCCGggcaccgaagacgtggatgtcaattaaggcaacccctcgcacctctctgattcagagggtttgggttaaatgcggaagacacatttcagttcaatgcattgttgtacaactgactaggtatccccctttccctttgcCTATAGAGCTCTGTCATAAACATGAGAGTAAGATTAGATTTTATgttctgcattattattattattattagggcAGCCACCAAGTTAAGAAATTATGGAATGTTCTGAAAACTGACTTCAGGTTTTTGAGGAATCTAGTCTCGCAGGAAGACAGTTTTATTTTATGAAGGTTTAATTCAGTTCTCTTCTTAGTATTTAACTAAATACTCTGTCTTTGGTATGAGAGGGACTAGACTTATTACTGTTCCCACTGTGGAATGAGTTTTCTTCAGTTAGGGAGCCTGAAGGAGCATGAGTGGAcaaacacaggagagaagcctttccaatACTCctagtgtggaaagagttttgtcTGGTTAAGGAGTCTGAAGGAGCATAAGAAGACACACCAAAAAAGCCctatcactcctctctctctctgtgtggaagGACATTTTCCCAGTCACAGaacctgaaatcacatgagagaaTAAAGTCGCTGTGTTCTGACATATTTTTTACTGAGAGTTTTTGTTTATGCCACATGAAATCATATTGTTTATGATTAAACCTGTCCCACAgttggtcccacagttgacaatgtccatcagagcaaacaccaagcaATGAGTTCGAAGAAATTGTcaatagagctcagagacaggatcgtgttgaggcacagatctggggaagggtaccaaaaaatgtctgtagcattgaaggtccccaagaacacagtggtcacCATCATTCtagaatggaagaagtttggaaccaacaagactcttc

Function

NR:

description
zinc finger protein 501-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609024.2 True 2600 mRNA 0.43 2 28912640 28921397

Neighbor

gene id symbol gene type direction distance location
LOC110527611 rbm45 coding upstream 132455 28754476 ~ 28780185 (+)
mtx2 mtx2 coding upstream 225847 28666416 ~ 28686793 (+)
LOC110527602 LOC105007064 coding upstream 544610 28306267 ~ 28368030 (+)
LOC118965275 LOC106575153 coding upstream 654198 28221625 ~ 28258442 (+)
LOC100653476 LOC106575134 coding upstream 744439 28145536 ~ 28168201 (+)
LOC118965279 LOC106595049 coding downstream 54086 28975483 ~ 28977613 (+)
LOC118965280 NA coding downstream 65949 28987346 ~ 28992237 (+)
LOC110527630 NA coding downstream 89581 29010978 ~ 29013251 (+)
LOC110527620 NA coding downstream 104934 29026331 ~ 29035347 (+)
LOC110527621 NA coding downstream 165714 29087111 ~ 29099411 (+)
G593170 LOC107661334 non-coding upstream 20569 28891822 ~ 28892071 (+)
G593163 NA non-coding upstream 35591 28876643 ~ 28877049 (+)
G593160 NA non-coding upstream 37603 28874696 ~ 28875037 (+)
G593158 NA non-coding upstream 40487 28871909 ~ 28872153 (+)
G593155 NA non-coding upstream 50006 28862365 ~ 28862634 (+)
G593224 NA non-coding downstream 27608 28949005 ~ 29041967 (+)
G593228 NA non-coding downstream 32691 28954088 ~ 28954871 (+)
G593188 NA non-coding downstream 58504 28979901 ~ 28980194 (+)
G593260 LOC106593246 non-coding downstream 98263 29019660 ~ 29024943 (+)
G593171 NA other upstream 20215 28892163 ~ 28892425 (+)
G593144 NA other upstream 71557 28835209 ~ 28841083 (+)
plekha3 LOC106575131 other upstream 1038219 27854006 ~ 27874521 (+)
G592445 lig4 other upstream 1205346 27703583 ~ 27707294 (+)
G592134 NA other upstream 1428844 27483050 ~ 27483796 (+)
G593283 NA other downstream 138301 29059698 ~ 29064592 (+)
LOC110527619 LOC106578599 other downstream 408275 29329584 ~ 29503787 (+)
G593513 LOC106610831 other downstream 606630 29528027 ~ 29528910 (+)
G593774 LOC106593940 other downstream 1110562 30031959 ~ 30032621 (+)
G596168 NA other downstream 1981782 30903179 ~ 30903887 (+)

Expression


Co-expression Network